Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Reverse (-)

52871390 .. 52877773

Gene Structure 6384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGTCCTCCGCCGTCAAGCAAGAAATCCCGGAACTCTCCTCCGCCGAGAAAACCACCGGAATCCCCAATCCCTCGCCGATCGACATCAGCAGCGACAGTGAGAGCAGTAGTAACTCCGTCGATTCTTCTTCGGACATCGACGACCTAGAGACCACTTCCTTGATCGAGTCCATCACGTGCAAGTCAAGGAACGAACGTAACTTCGATGAAGCCCCTCCGGCGAAGAAAACGAAACGCGAAGGCGAATCCTCGCTGAGGCTAGGGTTTCCGGAACCGGTGCCGCTCAACTTGCCGGTGACGGAGGCGGTGCCGTTGGCAATGGCTCGGGTGTTGCCGGACACAACGTGCGTGACACGGAAAATTGGGGATAAAAATAGTAATAATATCAATATGAATGATAATCAAGTAGGTCCAGTTTTACGGGGTTGCAAGCAGTTTTGGAAAGCTGGGGATTATGAGGGTGACAAGGACAACGATGCTAATTCTGCCTTTTCTTCCGTTGGCATGGATCATGCGAGAATTCACCCTAAGTTTCTGCATTCGAATGCCACCAGTCACAAATGGGCTTTGGGAGCTTTTGCAGAGCTGCTAGACAATTCTTTAGATGAGGTCTGCAATGGAGCCACTTATGTTAATATTGACATGGCAAGAAATAAAAAAGATGGTAATCTGATGATTGTGGTGGAAGATAATGGTGGTGGAATGACTCCTGATAAAATGAGACAGTGCATGTCTCTTGGGTATTCAGCAAAAAGCAAAATGGCAAATACAATTGGTCAATATGGCAATGGGTTTAAGACTAGTACCATGAGACTTGGAGCAGATGTTATAGTGTTCTCTCGTTGTCAGGGGATTAATGGAACAAGCCCAACACAGACCATTGGATTGCTATCTTACAATTTTCTGAGGGGTACTGGAAAGGAAGATATAGTTGTTCCCATGATTGACTATGAGAAAAGTGGTCGAGGTTGGAACAAGATGATGCGGGCTTCTCCAGATGATTGGACAAGAAATTTAGCAACCATTGTGCAGTGGTCTCCTTATTCAAGTGAAGAAGATCTTCTTCAGCAATTTAAGTTATTTAGAGGGCATGGCACACGGATAGTAATATACAACCTTTGGGAGGATGATGAAGGACATCTGGAACTTGATTTTGATACTGATCCCCATGACATTCAAATTAGAGGAGTCAACAGGGATGAGAAGAGCATTCAGATGTCAAAAAAACATCCCAATTCTAGACACTTTTTAACTTATCGACATTCATTGAGGGTACGCCTGGAGCTTCCATCTCACTTTAGAATCATTCTGCGCGGGCAAGATATCAAACATCACAATATAGTGAACGACATGATGATGACGAAGGTGGTGACGTACAGACCTGTAAATCTCCCAGAGGGAATGCCAAAAGATTCAAATATGGTTGCCAAAGTGACTCTTGGGTTTGTGAAGGATGCACGCTCTCATATTGATATCCAAGGGTTCAATGTTTATCATAAAAATAGACTGATTAAGCCTTTTTGGCGTGTTTGGAATGCTGCAGGCAGTGATGGTCGTGGAGTTGTAGGTGTGTTGGAAGCTAATTTTGTTGAACCAGCTCACGACAAACAGGGCTTTGAGCGGACAAATGTTCTTCAAAGACTTGAGCAACGATTGATTGGAATGCAAAAGGAGTTCTGGTCTAAAAATTGCCAGATTGTTGGCTATGCTCCAAGAAGACGTACTAGTGACTTTCCAGAAAGAGATTCTTCAGTATCTGATAAAGAGAAATCACCCAGAAATCAGAATGGTCATGGTTCTAGTAGTGGAGGGTTTAAGGCAAGCTCAAGTAAAAAACTCGAAAAAGGATCATTGCCTGTGAATGCTGAAAGTGAAGATGGGAACTGTAATGAGGCATTGCATGCTTCCATTAAACCTCAGCAAGATCATGCGTCAGACTCAAGGGAGGTTCGCATACCTTTGAAAATAGCTGATACAAATGGAGAGGGACAAGTCATGACGGACCATGTACTTGAGCGTTCGATTATGTTGAGAACAGATTCATCGATTGTGGAAAGATTGGAGGAGGCTCTAAATGATCTTAATCATGAAAGAGATAGGTGTAAATCTCTAAAAACTGAACTTGAGAAGGCAAACGAAAGAATAGAAGAGTTGGACAAAGAGCAAGAAGCACTTATTCAGATACTAGTAGCAGAAAAGACTGAAAGAGAACAGGAGGAAGAACGACTCAGGAAAAGCCTAACGGATGCTTCTAAAACCATTGATGAGCTGCTTGAGAAGGTGAAGCGATTAGAAGGAAGGACGCCAGTGACCTGCAAAGTTGAAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

777

Amino Acids

87.31

Weight (kDa)

6.15

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	191 - 287	1.8e-18	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	192 - 271	1.1e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	427 - 560	8.6e-52	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2321
AccB1I	GGYRCC	2 cut(s)	277, 307
AccBSI	CCGCTC	2 cut(s)	283, 1621
AccII	CGCG	2 cut(s)	237, 1314
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	7 cut(s)	9, 42, 281, 305, 985, 1314, 1621
AclWI	GGATC	3 cut(s)	516, 1157, 1855
AcsI	RAATTY	2 cut(s)	519, 1012
AcuI	CTGAAG	2 cut(s)	1049, 1734
AcvI	CACGTG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	2303
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	6 cut(s)	805, 913, 1275, 1376, 1723, 2010
AfiI	CCNNNNNNNGG	2 cut(s)	255, 1123
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	8 cut(s)	1047, 1178, 1416, 1486, 1592, 1637, 1963, 2324
AhlI	ACTAGT	3 cut(s)	800, 1724, 2185
AjnI	CCWGG	1 cut(s)	1278
AluBI	AGCT	9 cut(s)	446, 575, 586, 1285, 1580, 1598, 1824, 1970, 2269
AluI	AGCT	9 cut(s)	446, 575, 586, 1285, 1580, 1598, 1824, 1970, 2269
Alw26I	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
AlwI	GGATC	3 cut(s)	516, 1157, 1855
AlwNI	CAGNNNCTG	1 cut(s)	1757
Ama87I	CYCGRG	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	90, 586, 1538, 2269
ApoI	RAATTY	2 cut(s)	519, 1012
AseI	ATTAAT	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	2 cut(s)	1059, 2038
AspLEI	GCGC	1 cut(s)	1314
AspS9I	GGNCC	2 cut(s)	410, 2002
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	6 cut(s)	307, 473, 515, 1381, 1764, 2293
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	410, 2002
BanI	GGYRCC	2 cut(s)	277, 307
BbrPI	CACGTG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	1723
BbvCI	CCTCAGC	2 cut(s)	254, 1917
BbvI	GCAGC	4 cut(s)	102, 573, 1525, 2256
BccI	CCATC	5 cut(s)	179, 656, 1297, 1544, 1871
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	1280
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BcuI	ACTAGT	3 cut(s)	800, 1724, 2185
BfaI	CTAG	8 cut(s)	146, 260, 590, 801, 1239, 1725, 1800, 2186
BfmI	CTRYAG	1 cut(s)	1539
BfuAI	ACCTGC	1 cut(s)	2321
BglI	GCCNNNNNGGC	2 cut(s)	218, 1522
BglII	AGATCT	1 cut(s)	1057
BisI	GCNGC	5 cut(s)	91, 281, 587, 1539, 2270
BlsI	GCNGC	5 cut(s)	92, 282, 588, 1540, 2271
Bme1390I	CCNGG	2 cut(s)	29, 1280
Bme18I	GGWCC	2 cut(s)	410, 2002
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	410, 2002
BmiI	GGNNCC	4 cut(s)	273, 279, 309, 622
BmrFI	CCNGG	2 cut(s)	29, 1280
BmsI	GCATC	4 cut(s)	466, 972, 1444, 2236
BpiI	GAAGAC	1 cut(s)	1723
BpmI	CTGGAG	2 cut(s)	978, 1301
Bpu10I	CCTNAGC	2 cut(s)	254, 1917
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	6 cut(s)	1664, 1810, 1924, 2033, 2144, 2294
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	2045
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	5 cut(s)	83, 666, 889, 1161, 2082
BsaHI	GRCGYC	1 cut(s)	2303
BsaI	GGTCTC	2 cut(s)	143, 1041
BsaJI	CCNNGG	1 cut(s)	1477
BsaWI	WCCGGW	3 cut(s)	56, 268, 274
BsaXI	ACNNNNNCTCC	4 cut(s)	810, 840, 1664, 1694
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 1123
Bse118I	RCCGGY	2 cut(s)	274, 292
Bse1I	ACTGG	4 cut(s)	413, 552, 919, 2306
Bse3DI	GCAATG	5 cut(s)	324, 622, 793, 1850, 1895
Bse8I	GATNNNNATC	5 cut(s)	83, 666, 889, 1161, 2082
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	1280
BseCI	ATCGAT	1 cut(s)	2045
BseDI	CCNNGG	1 cut(s)	1477
BseGI	GGATG	5 cut(s)	1132, 1204, 1228, 1459, 2251
BseJI	GATNNNNATC	5 cut(s)	83, 666, 889, 1161, 2082
BseLI	CCNNNNNNNGG	2 cut(s)	255, 1123
BseMI	GCAATG	5 cut(s)	324, 622, 793, 1850, 1895
BseMII	CTCAG	4 cut(s)	245, 896, 1931, 2242
BseNI	ACTGG	4 cut(s)	413, 552, 919, 2306
BseRI	GAGGAG	3 cut(s)	28, 1200, 2078
BseXI	GCAGC	4 cut(s)	102, 573, 1525, 2256
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	1049
Bsh1236I	CGCG	2 cut(s)	237, 1314
Bsh1285I	CGRYCG	1 cut(s)	81
BshNI	GGYRCC	2 cut(s)	277, 307
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	2045
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	7 cut(s)	29, 57, 218, 269, 275, 293, 335
BslFI	GGGAC	1 cut(s)	2001
BslI	CCNNNNNNNGG	2 cut(s)	255, 1123
BsmAI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BsmFI	GGGAC	1 cut(s)	2001
BsmI	GAATGC	7 cut(s)	538, 550, 1209, 1407, 1540, 1668, 1867
Bso31I	GGTCTC	2 cut(s)	143, 1041
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
BspACI	CCGC	7 cut(s)	9, 42, 281, 305, 985, 1314, 1621
BspCNI	CTCAG	4 cut(s)	246, 897, 1930, 2241
BspDI	ATCGAT	1 cut(s)	2045
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	237, 1314
BspHI	TCATGA	2 cut(s)	1995, 2086
BspLI	GGNNCC	4 cut(s)	273, 279, 309, 622
BspMAI	CTGCAG	1 cut(s)	1543
BspMI	ACCTGC	1 cut(s)	2321
BspPI	GGATC	3 cut(s)	516, 1157, 1855
BspQI	GCTCTTC	1 cut(s)	1199
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	277, 307
BspTNI	GGTCTC	2 cut(s)	143, 1041
BsrBI	CCGCTC	2 cut(s)	283, 1621
BsrDI	GCAATG	5 cut(s)	324, 622, 793, 1850, 1895
BsrFI	RCCGGY	2 cut(s)	274, 292
BsrI	ACTGG	4 cut(s)	413, 552, 919, 2306
BssAI	RCCGGY	2 cut(s)	274, 292
BssECI	CCNNGG	1 cut(s)	1477
BssMI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
BssNI	GRCGYC	1 cut(s)	2303
BssT1I	CCWWGG	1 cut(s)	1477
Bst2UI	CCWGG	1 cut(s)	1280
Bst4CI	ACNGT	3 cut(s)	98, 726, 1886
Bst6I	CTCTTC	2 cut(s)	1199, 2142
BstACI	GRCGYC	1 cut(s)	2303
BstAPI	GCANNNNNTGC	1 cut(s)	1901
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	7 cut(s)	431, 987, 1316, 1459, 1543, 1822, 1902
BstDEI	CTNAG	5 cut(s)	254, 528, 905, 1917, 2228
BstENI	CCTNNNNNAGG	2 cut(s)	253, 1121
BstF5I	GGATG	5 cut(s)	1132, 1204, 1228, 1459, 2251
BstFNI	CGCG	2 cut(s)	237, 1314
BstHHI	GCGC	1 cut(s)	1314
BstKTI	GATC	8 cut(s)	81, 165, 511, 1060, 1165, 1850, 1927, 2080
BstMAI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BstMBI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1522, 1901
BstNI	CCWGG	1 cut(s)	1280
BstNSI	RCATGY	2 cut(s)	733, 1904
BstSCI	CCNGG	2 cut(s)	27, 1278
BstSFI	CTRYAG	1 cut(s)	1539
BstUI	CGCG	2 cut(s)	237, 1314
BstV1I	GCAGC	4 cut(s)	102, 573, 1525, 2256
BstV2I	GAAGAC	1 cut(s)	1723
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	2 cut(s)	1002, 1700
BstYI	RGATCY	1 cut(s)	1057
Bsu15I	ATCGAT	1 cut(s)	2045
BsuTUI	ATCGAT	1 cut(s)	2045
BtsCI	GGATG	5 cut(s)	1132, 1204, 1228, 1459, 2251
BtsI	GCAGTG	2 cut(s)	1037, 1552
BtsIMutI	CAGTG	5 cut(s)	103, 731, 1037, 1552, 2313
BveI	ACCTGC	1 cut(s)	2321
Cac8I	GCNNGC	7 cut(s)	431, 987, 1316, 1459, 1543, 1822, 1902
CaiI	CAGNNNCTG	1 cut(s)	1757
CciI	TCATGA	2 cut(s)	1995, 2086
CfoI	GCGC	1 cut(s)	1314
Cfr10I	RCCGGY	2 cut(s)	274, 292
Cfr13I	GGNCC	2 cut(s)	410, 2002
ClaI	ATCGAT	1 cut(s)	2045
CseI	GACGC	2 cut(s)	1920, 2311
Csp6I	GTAC	6 cut(s)	804, 912, 1274, 1375, 1722, 2009
CspAI	ACCGGT	1 cut(s)	274
CviQI	GTAC	6 cut(s)	804, 912, 1274, 1375, 1722, 2009
DdeI	CTNAG	5 cut(s)	254, 528, 905, 1917, 2228
DpnI	GATC	8 cut(s)	80, 164, 510, 1059, 1164, 1849, 1926, 2079
DpnII	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
DraIII	CACNNNGTG	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	1199, 2142
EarI	CTCTTC	2 cut(s)	1199, 2142
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	1477
Eco31I	GGTCTC	2 cut(s)	143, 1041
Eco32I	GATATC	2 cut(s)	1324, 1474
Eco47I	GGWCC	2 cut(s)	410, 2002
Eco57I	CTGAAG	2 cut(s)	1049, 1734
Eco72I	CACGTG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	2 cut(s)	253, 1121
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	1278
EcoRV	GATATC	2 cut(s)	1324, 1474
EcoT14I	CCWWGG	1 cut(s)	1477
ErhI	CCWWGG	1 cut(s)	1477
FaqI	GGGAC	1 cut(s)	2001
FauI	CCCGC	2 cut(s)	978, 1307
Fnu4HI	GCNGC	5 cut(s)	91, 281, 587, 1539, 2270
FokI	GGATG	5 cut(s)	1139, 1211, 1215, 1466, 2258
Fsp4HI	GCNGC	5 cut(s)	91, 281, 587, 1539, 2270
FspBI	CTAG	8 cut(s)	146, 260, 590, 801, 1239, 1725, 1800, 2186
GlaI	GCGC	1 cut(s)	1313
GluI	GCNGC	5 cut(s)	91, 281, 587, 1539, 2270
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	2 cut(s)	978, 1301
HapII	CCGG	7 cut(s)	29, 57, 218, 269, 275, 293, 335
HgaI	GACGC	2 cut(s)	1920, 2311
HhaI	GCGC	1 cut(s)	1314
Hin1I	GRCGYC	1 cut(s)	2303
Hin6I	GCGC	1 cut(s)	1312
HinP1I	GCGC	1 cut(s)	1312
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HpaII	CCGG	7 cut(s)	29, 57, 218, 269, 275, 293, 335
HphI	GGTGA	6 cut(s)	307, 473, 515, 1381, 1764, 2293
Hpy166II	GTNNAC	2 cut(s)	1192, 1345
Hpy188I	TCNGA	8 cut(s)	133, 672, 906, 1215, 1759, 1785, 1936, 2181
Hpy8I	GTNNAC	2 cut(s)	1192, 1345
Hpy99I	CGWCG	2 cut(s)	122, 143
HpyAV	CCTTC	8 cut(s)	233, 1127, 1357, 1444, 2122, 2272, 2288, 2292
HpyCH4III	ACNGT	3 cut(s)	98, 726, 1886
HpyCH4IV	ACGT	5 cut(s)	176, 196, 344, 1373, 1720
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1522, 1901
HpyF3I	CTNAG	5 cut(s)	254, 528, 905, 1917, 2228
HpySE526I	ACGT	5 cut(s)	176, 196, 344, 1373, 1720
Hsp92I	GRCGYC	1 cut(s)	2303
HspAI	GCGC	1 cut(s)	1312
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
LguI	GCTCTTC	1 cut(s)	1199
LmnI	GCTCC	5 cut(s)	572, 620, 818, 1282, 1714
Lsp1109I	GCAGC	4 cut(s)	102, 573, 1525, 2256
LweI	GCATC	4 cut(s)	466, 972, 1444, 2236
MaeI	CTAG	8 cut(s)	146, 260, 590, 801, 1239, 1725, 1800, 2186
MaeII	ACGT	5 cut(s)	176, 196, 344, 1373, 1720
MalI	GATC	8 cut(s)	80, 164, 510, 1059, 1164, 1849, 1926, 2079
MbiI	CCGCTC	2 cut(s)	283, 1621
MboI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	1057
MlyI	GAGTC	6 cut(s)	176, 700, 1197, 1429, 1931, 2220
MmeI	TCCRAC	3 cut(s)	950, 1554, 2133
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	1059, 2038
MseI	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1512, 1815, 1911, 2082
MslI	CAYNNNNRTG	3 cut(s)	543, 1214, 1355
MspI	CCGG	7 cut(s)	29, 57, 218, 269, 275, 293, 335
MspR9I	CCNGG	2 cut(s)	29, 1280
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	7 cut(s)	538, 550, 1209, 1407, 1540, 1668, 1867
MvaI	CCWGG	1 cut(s)	1280
MvnI	CGCG	2 cut(s)	237, 1314
MwoI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1522, 1901
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
NlaIV	GGNNCC	4 cut(s)	273, 279, 309, 622
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	8 cut(s)	295, 349, 461, 554, 1369, 1432, 1727, 2308
NspI	RCATGY	2 cut(s)	733, 1904
NspV	TTCGAA	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	1904
PagI	TCATGA	2 cut(s)	1995, 2086
PciSI	GCTCTTC	1 cut(s)	1199
PctI	GAATGC	7 cut(s)	538, 550, 1209, 1407, 1540, 1668, 1867
PdmI	GAANNNNTTC	2 cut(s)	1059, 2038
PfeI	GAWTC	7 cut(s)	60, 122, 245, 1302, 1412, 1745, 2039
PfoI	TCCNGGA	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	92, 282, 588, 1540, 2271
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	6 cut(s)	175, 700, 1196, 1429, 1931, 2220
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	6 cut(s)	175, 700, 1196, 1429, 1931, 2220
Ppu21I	YACGTR	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	1278
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	1278
PspN4I	GGNNCC	4 cut(s)	273, 279, 309, 622
PspPI	GGNCC	2 cut(s)	410, 2002
PstI	CTGCAG	1 cut(s)	1543
PstNI	CAGNNNCTG	1 cut(s)	1757
PsuI	RGATCY	1 cut(s)	1057
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	6 cut(s)	805, 913, 1275, 1376, 1723, 2010
RsaNI	GTAC	6 cut(s)	804, 912, 1274, 1375, 1722, 2009
RseI	CAYNNNNRTG	3 cut(s)	543, 1214, 1355
SapI	GCTCTTC	1 cut(s)	1199
SaqAI	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1512, 1815, 1911, 2082
SatI	GCNGC	5 cut(s)	91, 281, 587, 1539, 2270
Sau3AI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1847, 1924, 2077
Sau96I	GGNCC	2 cut(s)	410, 2002
SchI	GAGTC	6 cut(s)	176, 700, 1197, 1429, 1931, 2220
ScrFI	CCNGG	2 cut(s)	29, 1280
SfaNI	GCATC	4 cut(s)	466, 972, 1444, 2236
SfcI	CTRYAG	1 cut(s)	1539
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	2 cut(s)	410, 2002
SmiMI	CAYNNNNRTG	3 cut(s)	543, 1214, 1355
SmlI	CTYRAG	6 cut(s)	1643, 1825, 1939, 2012, 2123, 2273
SmoI	CTYRAG	6 cut(s)	1643, 1825, 1939, 2012, 2123, 2273
SpeI	ACTAGT	3 cut(s)	800, 1724, 2185
SphI	GCATGC	1 cut(s)	1904
SsiI	CCGC	7 cut(s)	9, 42, 281, 305, 985, 1314, 1621
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	8 cut(s)	146, 260, 590, 801, 1239, 1725, 1800, 2186
StyD4I	CCNGG	2 cut(s)	27, 1278
StyI	CCWWGG	1 cut(s)	1477
TaaI	ACNGT	3 cut(s)	98, 726, 1886
TaiI	ACGT	5 cut(s)	179, 199, 347, 1376, 1723
TatI	WGTACW	1 cut(s)	2008
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	7 cut(s)	60, 122, 245, 1302, 1412, 1745, 2039
Tru1I	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1512, 1815, 1911, 2082
Tru9I	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1512, 1815, 1911, 2082
TscAI	CASTG	5 cut(s)	103, 731, 1037, 1552, 2313
TseFI	GTSAC	8 cut(s)	295, 349, 461, 554, 1369, 1432, 1727, 2308
TseI	GCWGC	4 cut(s)	90, 586, 1538, 2269
Tsp45I	GTSAC	8 cut(s)	295, 349, 461, 554, 1369, 1432, 1727, 2308
TspDTI	ATGAA	6 cut(s)	222, 407, 1146, 1254, 2031, 2103
TspGWI	ACGGA	7 cut(s)	106, 314, 370, 487, 1114, 2015, 2258
TspRI	CASTG	5 cut(s)	103, 731, 1037, 1552, 2313
VpaK11BI	GGWCC	2 cut(s)	410, 2002
VspI	ATTAAT	1 cut(s)	855
XagI	CCTNNNNNAGG	2 cut(s)	253, 1121
XapI	RAATTY	2 cut(s)	519, 1012
XbaI	TCTAGA	1 cut(s)	1238
XceI	RCATGY	2 cut(s)	733, 1904
XmnI	GAANNNNTTC	2 cut(s)	1059, 2038
XspI	CTAG	8 cut(s)	146, 260, 590, 801, 1239, 1725, 1800, 2186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.