Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379671.1

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Forward (+)

262 .. 998

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtcctccgccatcaagcaagaaatcccggaactctcctccgccgagaaaaccgccggaatccccaatccctcgccgatcgacatcagcagcgacagtgagagcagtagtaactccgtcgattatttttcggacatcgacgacctagagaccacttccttgatcgagtccatcacgtgcaagtcaaggaacgaacgtaacttcgatgaagcccctccggcgaagaaaacgaaacgcgacggcgaatcctcgttgcggctagggtttcctaaaccggtgccgctcaacttgccggtgacggcggcggtgccgttggcaatggctcgggtgttgccggactcaacgtgcgtgacaaggaaaattggggataaaaatagtaataatatcaatatgaatgataatcaagtaggtccagttttacggggttgcaagcagttttggaaagctggggattatgagggtgacaaggacaacgatgctaattctgccttttcttccgttggcatggatcatgcgagaattcaccctaggtttctgcattcgaatgccaccagtcacaaatgggctttgggaggtaggtacattgtgttggaacttaatcgactgatcgcggtttatgatacaatatatggccgggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

213

Amino Acids

23.36

Weight (kDa)

5.63

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	277, 307
AccBSI	CCGCTC	1 cut(s)	283
AccII	CGCG	2 cut(s)	237, 611
AciI	CCGC	8 cut(s)	9, 42, 54, 256, 281, 302, 305, 611
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgeI	ACCGGT	1 cut(s)	274
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	519
AsiGI	ACCGGT	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	29, 635
AsuHPI	GGTGA	3 cut(s)	307, 473, 515
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	410
AvrII	CCTAGG	1 cut(s)	527
BanI	GGYRCC	2 cut(s)	277, 307
BbrPI	CACGTG	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	20, 179
BceAI	ACGGC	3 cut(s)	256, 295, 315
BcnI	CCSGG	2 cut(s)	29, 635
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	146, 260, 528
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	91, 257, 281, 303
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	4 cut(s)	92, 258, 282, 304
Bme1390I	CCNGG	2 cut(s)	29, 635
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	279, 309
BmrFI	CCNGG	2 cut(s)	29, 635
BmsI	GCATC	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	29, 635
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	2 cut(s)	274, 292
Bse1I	ACTGG	2 cut(s)	413, 552
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	527
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	413, 552
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	237, 611
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	633
BshNI	GGYRCC	2 cut(s)	277, 307
BshTI	ACCGGT	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 634
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	538, 550
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	78, 162, 508, 606
BspACI	CCGC	8 cut(s)	9, 42, 54, 256, 281, 302, 305, 611
BspANI	GGCC	1 cut(s)	633
BspFNI	CGCG	2 cut(s)	237, 611
BspLI	GGNNCC	2 cut(s)	279, 309
BspPI	GGATC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	277, 307
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	2 cut(s)	274, 292
BsrI	ACTGG	2 cut(s)	413, 552
BssAI	RCCGGY	2 cut(s)	274, 292
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	4 cut(s)	78, 162, 508, 606
BssT1I	CCWWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	431
BstFNI	CGCG	2 cut(s)	237, 611
BstKTI	GATC	4 cut(s)	81, 165, 511, 609
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	78, 162, 508, 606
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 289, 485
BstSCI	CCNGG	2 cut(s)	27, 633
BstUI	CGCG	2 cut(s)	237, 611
BstV1I	GCAGC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	431
Cfr10I	RCCGGY	2 cut(s)	274, 292
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	580
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	2 cut(s)	505, 512
CviJI	RGCY	6 cut(s)	212, 259, 323, 446, 566, 633
CviKI_1	RGCY	6 cut(s)	212, 259, 323, 446, 566, 633
CviQI	GTAC	1 cut(s)	580
DpnI	GATC	4 cut(s)	80, 164, 510, 608
DpnII	GATC	4 cut(s)	78, 162, 508, 606
EaeI	YGGCCR	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	2 cut(s)	508, 515
FaiI	YATR	7 cut(s)	392, 456, 506, 513, 618, 628, 630
FatI	CATG	2 cut(s)	504, 511
Fnu4HI	GCNGC	4 cut(s)	91, 257, 281, 303
Fsp4HI	GCNGC	4 cut(s)	91, 257, 281, 303
FspBI	CTAG	3 cut(s)	146, 260, 528
GluI	GCNGC	4 cut(s)	91, 257, 281, 303
GsaI	CCCAGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 634
Hin1II	CATG	2 cut(s)	508, 515
HinfI	GANTC	4 cut(s)	60, 167, 245, 338
HpaII	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 634
HphI	GGTGA	3 cut(s)	307, 473, 515
Hpy188I	TCNGA	1 cut(s)	133
Hpy99I	CGWCG	3 cut(s)	122, 143, 242
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	3 cut(s)	176, 196, 344
HpyCH4V	TGCA	3 cut(s)	180, 429, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 289, 485
HpySE526I	ACGT	3 cut(s)	176, 196, 344
Hsp92II	CATG	2 cut(s)	508, 515
Kzo9I	GATC	4 cut(s)	78, 162, 508, 606
LpnPI	CCDG	9 cut(s)	42, 70, 231, 288, 306, 348, 426, 432, 565
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	3 cut(s)	146, 260, 528
MaeII	ACGT	3 cut(s)	176, 196, 344
MaeIII	GTNAC	6 cut(s)	110, 197, 295, 349, 461, 554
MalI	GATC	4 cut(s)	80, 164, 510, 608
MbiI	CCGCTC	1 cut(s)	283
MboI	GATC	4 cut(s)	78, 162, 508, 606
MboII	GAAGA	2 cut(s)	235, 486
MluCI	AATT	3 cut(s)	360, 481, 519
MlyI	GAGTC	2 cut(s)	176, 332
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	7 cut(s)	16, 49, 82, 225, 259, 451, 566
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 634
MspR9I	CCNGG	2 cut(s)	29, 635
Mva1269I	GAATGC	2 cut(s)	538, 550
MvnI	CGCG	2 cut(s)	237, 611
MwoI	GCNNNNNNNGC	3 cut(s)	218, 289, 485
NciI	CCSGG	2 cut(s)	29, 635
NdeII	GATC	4 cut(s)	78, 162, 508, 606
NlaIII	CATG	2 cut(s)	508, 515
NlaIV	GGNNCC	2 cut(s)	279, 309
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	4 cut(s)	295, 349, 461, 554
NspV	TTCGAA	1 cut(s)	542
PctI	GAATGC	2 cut(s)	538, 550
PfeI	GAWTC	2 cut(s)	60, 245
PfoI	TCCNGGA	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	92, 258, 282, 304
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	2 cut(s)	175, 332
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	2 cut(s)	175, 332
Ppu21I	YACGTR	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	279, 309
PspPI	GGNCC	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	4 cut(s)	91, 257, 281, 303
Sau3AI	GATC	4 cut(s)	78, 162, 508, 606
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	176, 332
ScrFI	CCNGG	2 cut(s)	29, 635
SetI	ASST	9 cut(s)	147, 179, 199, 347, 412, 448, 533, 577, 581
SfaNI	GCATC	1 cut(s)	466
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	3 cut(s)	360, 481, 519
SsiI	CCGC	8 cut(s)	9, 42, 54, 256, 281, 302, 305, 611
SspMI	CTAG	3 cut(s)	146, 260, 528
StyD4I	CCNGG	2 cut(s)	27, 633
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	3 cut(s)	179, 199, 347
TaqI	TCGA	7 cut(s)	81, 120, 138, 165, 204, 542, 601
TasI	AATT	3 cut(s)	360, 481, 519
TauI	GCSGC	3 cut(s)	259, 283, 305
TfiI	GAWTC	2 cut(s)	60, 245
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	4 cut(s)	295, 349, 461, 554
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	4 cut(s)	295, 349, 461, 554
TspDTI	ATGAA	2 cut(s)	222, 407
TspGWI	ACGGA	2 cut(s)	106, 487
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	519
XmaJI	CCTAGG	1 cut(s)	527
XspI	CTAG	3 cut(s)	146, 260, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.