Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Reverse (-)

54360080 .. 54365768

Gene Structure 5689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGGCTCGGGTGTTGCCGGACTCAACGTGCGTGACACGGAAAATTGGGGATAAAAATAGTAATAATATCAATATGAATGATAATCAAGTAGGTCCAGTTTTACGGGGTTGCAAGCAGTTTTGGAAAGCTGGGGATTATGAGGGTGACAAGGACAACGATGCTAATTCTGCCTTTTCTTCCGTTGGCATGGATCATGCGAGAATTCACCCTAGGTTTCTGCATTCGAATGCCACCAGTCACAAATGGGCTTTGGGAGGTAGCAAAATAGGGGCCGGAGTGTGGATCGATTCTCTGTCCATGATGGGAGCCTGTCCTGTCCTCGGCTTCTCCTTTCTTCCAAACATGGCCTTAAGGAATTTGGCTTATCCTACTGCATGTTCCTTGACTATTTGTGTTGCCCAGGTCTGCAATGGAGCCACTTATGTTAATATTGACATGGCAAGAAATAAAAAAGATGGCAATCTGATGATTGAGGTGGAAGATAATGGTGGTGGAATGACTCCTGATAAAATGAGACAGTGCATGTCTCTTGGGTATTCAGCAAAAAGCAAAATGGCAAATACAATTGGTCAATATGGCAATGGGTTTAAGACTAGTACTATGAGACTTGGAGCAGATGTTATAGTGTTCTCTCGTTGTCAGGGGATTAATGGAACAAGCCCAACACAGACCATTGGACTGCTATCTTACAATTTCCTGAGGGGTACTGGAAAGGAAGATATAGTTGTTCCCATGATTGACTATGAGAAAAGTGGTCGAGGTTGGAACAAGATGGTGCGGGCTTCTCCAGATGATTGGACAAGAAATTTAGCAACCATTGTGCAGTGGTCTCCTTATTCAAGTGAAGAAGATCTTCTTCAGCAATTTAAGTTATTTAGAGGGCATGGCACACGGATAGTAATATACAACCTTTGGGAGGATGATGAAGGACATCTGGAACTTGATTTTGATACTGATCCCCATGACATTCAAATTAGAGGGGTCAACAGGGATGAGAAGAGCATTCAGATGTCAAAAAAATATCCCAATTCTAGACACTTTTTAACTTATCGACATTCATTGAGGAGTTATGCATCAATTCTCTATCTCAGGCTTCCATCTCACTTTAGAATCATTCTGCGCGGGCAAGATATCAAACATCACAATATAGTGAATGACATGATGATGACGAAGGTGGTGACTTACAGACCTGTAAATCTCCCAGAGGGAATGCCAAAAGATTCAAATATGGCTGCCAAAGTGACTCTTGGGTTTGTGAAGGATGCACGCTCTCATATTGATATCCAAGGGTTCAACGTTTATCATAAAAATAGACTGATTAAGCCTTTTTGGCGTGTTTGGAATGCTGCAGGCAGTGATGGTCGTGGAGTTATAGGTGTGTTGGAAGCTAATTTTGTTGAACCAGCTCACGACAAACAGGGCTTTGAGCGGACAAATGTTCTTCAAAGACTTGAGCAACGATTGATTGGAATGCAAAAGGAGTTCTGGTCTAAAAATTGCCAGATTGTTGGCTATGCTCCAAGAAGACGTACTAGTGACTTTCCAGAAAGAGATTCTTCAGTATCTGATAAAGAGAAATCACCCAGAAATCAGAATGGTCATGGTTCTAGTAGTGGAGGGTTTAAGGCAAGCTCAAGTACTAAAAAACTCAAAAAAGGATCATCGCCTGTGAATGCTGGAAGTGAAGATGGGAACTGTAATGAGGCATTGCATGCTTCCATTAAACCTCAGCAAGATCATGCGTCAGACTCGAGGGAGGTTCTCATACCTTTGAAACTTGAGAAGGCAAACGAAAGAATAGAAGAGTTGGACAAAGAGCAAGAAGCACTTATTCAGATACTAGTGGCAGAAAAGACTGAAAGAGAACAGGAGGAAGAACGACTCAGGAAAAGGCTAACGGATGCTTCTAAAACCATTGATGAGCTGCTTGAGAAGGTGAAACGATTAGAAGGAAGGACGCCAGTGACCTGCAAAGTTGAAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

662

Amino Acids

74.44

Weight (kDa)

8.98

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	138 - 218	2.2e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	352 - 496	2.2e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1976
AccBSI	CCGCTC	1 cut(s)	1429
AccII	CGCG	1 cut(s)	1122
AciI	CCGC	3 cut(s)	778, 1122, 1429
AclI	AACGTT	1 cut(s)	1296
AclWI	GGATC	4 cut(s)	198, 290, 950, 1666
AcsI	RAATTY	3 cut(s)	201, 355, 805
AcuI	CTGAAG	2 cut(s)	842, 1542
AcyI	GRCGYC	1 cut(s)	1958
AfaI	GTAC	4 cut(s)	598, 706, 1531, 1639
AfiI	CCNNNNNNNGG	3 cut(s)	279, 320, 916
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	8 cut(s)	840, 971, 1224, 1294, 1400, 1445, 1774, 1979
AhlI	ACTAGT	3 cut(s)	593, 1532, 1840
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	5 cut(s)	128, 1388, 1406, 1632, 1924
AluI	AGCT	5 cut(s)	128, 1388, 1406, 1632, 1924
Alw26I	GTCTC	4 cut(s)	508, 531, 598, 834
AlwI	GGATC	4 cut(s)	198, 290, 950, 1666
AlwNI	CAGNNNCTG	1 cut(s)	1565
Ama87I	CYCGRG	2 cut(s)	6, 1750
AoxI	GGCC	2 cut(s)	270, 345
ApeKI	GCWGC	3 cut(s)	1232, 1346, 1924
ApoI	RAATTY	3 cut(s)	201, 355, 805
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	852
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	2 cut(s)	92, 270
AsuHPI	GGTGA	5 cut(s)	155, 197, 1189, 1572, 1948
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	6, 1750
AvaII	GGWCC	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	1531
BbvCI	CCTCAGC	1 cut(s)	1728
BbvI	GCAGC	3 cut(s)	1219, 1333, 1911
BccI	CCATC	6 cut(s)	295, 449, 766, 1105, 1352, 1682
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	4 cut(s)	508, 531, 598, 834
BcuI	ACTAGT	3 cut(s)	593, 1532, 1840
BfaI	CTAG	6 cut(s)	210, 594, 1032, 1533, 1608, 1841
BfmI	CTRYAG	1 cut(s)	1347
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	1976
BglI	GCCNNNNNGGC	1 cut(s)	1330
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	3 cut(s)	1233, 1347, 1925
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	3 cut(s)	1234, 1348, 1926
BmcAI	AGTACT	2 cut(s)	598, 1639
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	6, 1750
BmgT120I	GGNCC	2 cut(s)	92, 270
BmiI	GGNNCC	3 cut(s)	271, 307, 415
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	4 cut(s)	148, 1082, 1252, 1891
BpiI	GAAGAC	1 cut(s)	1531
BpmI	CTGGAG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	1728
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	4 cut(s)	1472, 1618, 1799, 1949
Bsa29I	ATCGAT	1 cut(s)	285
BsaBI	GATNNNNATC	2 cut(s)	459, 954
BsaHI	GRCGYC	1 cut(s)	1958
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	4 cut(s)	209, 319, 399, 1285
BsaXI	ACNNNNNCTCC	4 cut(s)	603, 633, 1472, 1502
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 320, 916
Bse1I	ACTGG	4 cut(s)	95, 234, 712, 1961
Bse21I	CCTNAGG	1 cut(s)	698
Bse3DI	GCAATG	3 cut(s)	415, 586, 1706
Bse8I	GATNNNNATC	2 cut(s)	459, 954
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	209, 319, 399, 1285
BseGI	GGATG	4 cut(s)	925, 997, 1267, 1906
BseJI	GATNNNNATC	2 cut(s)	459, 954
BseLI	CCNNNNNNNGG	3 cut(s)	279, 320, 916
BseMI	GCAATG	3 cut(s)	415, 586, 1706
BseMII	CTCAG	4 cut(s)	689, 1102, 1742, 1897
BseNI	ACTGG	4 cut(s)	95, 234, 712, 1961
BseRI	GAGGAG	1 cut(s)	1078
BseXI	GCAGC	3 cut(s)	1219, 1333, 1911
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	842
Bsh1236I	CGCG	1 cut(s)	1122
BshFI	GGCC	2 cut(s)	272, 347
BshVI	ATCGAT	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	6, 1750
BsiSI	CCGG	2 cut(s)	17, 273
BslI	CCNNNNNNNGG	3 cut(s)	279, 320, 916
BsmAI	GTCTC	4 cut(s)	508, 531, 598, 834
BsmI	GAATGC	7 cut(s)	220, 232, 1002, 1215, 1348, 1476, 1678
BsnI	GGCC	2 cut(s)	272, 347
Bso31I	GGTCTC	1 cut(s)	834
BsoBI	CYCGRG	2 cut(s)	6, 1750
Bsp119I	TTCGAA	1 cut(s)	224
Bsp143I	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
BspACI	CCGC	3 cut(s)	778, 1122, 1429
BspANI	GGCC	2 cut(s)	272, 347
BspCNI	CTCAG	4 cut(s)	690, 1101, 1741, 1896
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	1122
BspLI	GGNNCC	3 cut(s)	271, 307, 415
BspMAI	CTGCAG	1 cut(s)	1351
BspMI	ACCTGC	1 cut(s)	1976
BspPI	GGATC	4 cut(s)	198, 290, 950, 1666
BspQI	GCTCTTC	1 cut(s)	992
BspT104I	TTCGAA	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	834
BsrBI	CCGCTC	1 cut(s)	1429
BsrDI	GCAATG	3 cut(s)	415, 586, 1706
BsrI	ACTGG	4 cut(s)	95, 234, 712, 1961
BssECI	CCNNGG	4 cut(s)	209, 319, 399, 1285
BssMI	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
BssNI	GRCGYC	1 cut(s)	1958
BssT1I	CCWWGG	2 cut(s)	209, 1285
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	519, 1697
Bst6I	CTCTTC	2 cut(s)	992, 1797
BstACI	GRCGYC	1 cut(s)	1958
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	1712
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	7 cut(s)	113, 780, 1124, 1267, 1351, 1630, 1713
BstDEI	CTNAG	4 cut(s)	698, 1088, 1728, 1883
BstENI	CCTNNNNNAGG	1 cut(s)	914
BstF5I	GGATG	4 cut(s)	925, 997, 1267, 1906
BstFNI	CGCG	1 cut(s)	1122
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	6 cut(s)	193, 285, 853, 958, 1661, 1738
BstMAI	GTCTC	4 cut(s)	508, 531, 598, 834
BstMBI	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 1330, 1712
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	3 cut(s)	378, 526, 1715
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	1347
BstUI	CGCG	1 cut(s)	1122
BstV1I	GCAGC	3 cut(s)	1219, 1333, 1911
BstV2I	GAAGAC	1 cut(s)	1531
BstX2I	RGATCY	1 cut(s)	850
BstXI	CCANNNNNNTGG	2 cut(s)	795, 1508
BstYI	RGATCY	1 cut(s)	850
Bsu15I	ATCGAT	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	272, 347
BsuTUI	ATCGAT	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	1647
BtsCI	GGATG	4 cut(s)	925, 997, 1267, 1906
BtsI	GCAGTG	2 cut(s)	830, 1360
BtsIMutI	CAGTG	4 cut(s)	524, 830, 1360, 1968
BveI	ACCTGC	1 cut(s)	1976
Cac8I	GCNNGC	7 cut(s)	113, 780, 1124, 1267, 1351, 1630, 1713
CaiI	CAGNNNCTG	1 cut(s)	1565
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	2 cut(s)	92, 270
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	2 cut(s)	1731, 1966
Csp6I	GTAC	4 cut(s)	597, 705, 1530, 1638
CviQI	GTAC	4 cut(s)	597, 705, 1530, 1638
DdeI	CTNAG	4 cut(s)	698, 1088, 1728, 1883
DpnI	GATC	6 cut(s)	192, 284, 852, 957, 1660, 1737
DpnII	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
Eam1104I	CTCTTC	2 cut(s)	992, 1797
EarI	CTCTTC	2 cut(s)	992, 1797
Eco130I	CCWWGG	2 cut(s)	209, 1285
Eco31I	GGTCTC	1 cut(s)	834
Eco32I	GATATC	2 cut(s)	1132, 1282
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	2 cut(s)	842, 1542
Eco81I	CCTNAGG	1 cut(s)	698
Eco88I	CYCGRG	2 cut(s)	6, 1750
EcoNI	CCTNNNNNAGG	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	399
EcoRV	GATATC	2 cut(s)	1132, 1282
EcoT14I	CCWWGG	2 cut(s)	209, 1285
EcoT22I	ATGCAT	1 cut(s)	1075
ErhI	CCWWGG	2 cut(s)	209, 1285
FauI	CCCGC	2 cut(s)	771, 1115
Fnu4HI	GCNGC	3 cut(s)	1233, 1347, 1925
FokI	GGATG	4 cut(s)	932, 1004, 1274, 1913
Fsp4HI	GCNGC	3 cut(s)	1233, 1347, 1925
FspBI	CTAG	6 cut(s)	210, 594, 1032, 1533, 1608, 1841
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	3 cut(s)	1233, 1347, 1925
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	2 cut(s)	272, 347
HapII	CCGG	2 cut(s)	17, 273
HgaI	GACGC	2 cut(s)	1731, 1966
HhaI	GCGC	1 cut(s)	1122
Hin1I	GRCGYC	1 cut(s)	1958
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	9 cut(s)	20, 287, 499, 1110, 1220, 1243, 1553, 1748, 1881
HpaII	CCGG	2 cut(s)	17, 273
HphI	GGTGA	5 cut(s)	155, 197, 1189, 1572, 1948
Hpy166II	GTNNAC	1 cut(s)	985
Hpy188I	TCNGA	6 cut(s)	465, 1008, 1567, 1593, 1747, 1836
Hpy188III	TCNNGA	8 cut(s)	503, 697, 788, 935, 1032, 1409, 1544, 1885
Hpy8I	GTNNAC	1 cut(s)	985
HpyAV	CCTTC	7 cut(s)	920, 1165, 1252, 1777, 1927, 1943, 1947
HpyCH4III	ACNGT	2 cut(s)	519, 1697
HpyCH4IV	ACGT	3 cut(s)	26, 1296, 1528
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 1330, 1712
HpyF3I	CTNAG	4 cut(s)	698, 1088, 1728, 1883
HpySE526I	ACGT	3 cut(s)	26, 1296, 1528
Hsp92I	GRCGYC	1 cut(s)	1958
HspAI	GCGC	1 cut(s)	1120
Kzo9I	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
LguI	GCTCTTC	1 cut(s)	992
LmnI	GCTCC	4 cut(s)	305, 413, 611, 1522
Lsp1109I	GCAGC	3 cut(s)	1219, 1333, 1911
LweI	GCATC	4 cut(s)	148, 1082, 1252, 1891
MaeI	CTAG	6 cut(s)	210, 594, 1032, 1533, 1608, 1841
MaeII	ACGT	3 cut(s)	26, 1296, 1528
MaeIII	GTNAC	7 cut(s)	31, 143, 236, 1177, 1240, 1535, 1963
MalI	GATC	6 cut(s)	192, 284, 852, 957, 1660, 1737
MbiI	CCGCTC	1 cut(s)	1429
MboI	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	850
MlyI	GAGTC	5 cut(s)	14, 493, 1237, 1742, 1875
MmeI	TCCRAC	3 cut(s)	743, 1362, 1788
Mph1103I	ATGCAT	1 cut(s)	1075
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	9 cut(s)	350, 426, 588, 648, 867, 1043, 1320, 1623, 1722
MslI	CAYNNNNRTG	3 cut(s)	225, 1007, 1163
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	2 cut(s)	17, 273
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	564
Mva1269I	GAATGC	7 cut(s)	220, 232, 1002, 1215, 1348, 1476, 1678
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	1122
MwoI	GCNNNNNNNGC	3 cut(s)	167, 1330, 1712
NdeII	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
NlaIV	GGNNCC	3 cut(s)	271, 307, 415
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	7 cut(s)	31, 143, 236, 1177, 1240, 1535, 1963
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	3 cut(s)	378, 526, 1715
NspV	TTCGAA	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	1715
PaeR7I	CTCGAG	1 cut(s)	1750
PciSI	GCTCTTC	1 cut(s)	992
PctI	GAATGC	7 cut(s)	220, 232, 1002, 1215, 1348, 1476, 1678
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	4 cut(s)	287, 1110, 1220, 1553
PkrI	GCNGC	3 cut(s)	1234, 1348, 1926
PleI	GAGTC	5 cut(s)	14, 493, 1237, 1742, 1875
PpsI	GAGTC	5 cut(s)	14, 493, 1237, 1742, 1875
PshBI	ATTAAT	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	1296
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	271, 307, 415
PspPI	GGNCC	2 cut(s)	92, 270
PspXI	VCTCGAGB	1 cut(s)	1750
PstI	CTGCAG	1 cut(s)	1351
PstNI	CAGNNNCTG	1 cut(s)	1565
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	4 cut(s)	598, 706, 1531, 1639
RsaNI	GTAC	4 cut(s)	597, 705, 1530, 1638
RseI	CAYNNNNRTG	3 cut(s)	225, 1007, 1163
SapI	GCTCTTC	1 cut(s)	992
SaqAI	TTAA	9 cut(s)	350, 426, 588, 648, 867, 1043, 1320, 1623, 1722
SatI	GCNGC	3 cut(s)	1233, 1347, 1925
Sau3AI	GATC	6 cut(s)	190, 282, 850, 955, 1658, 1735
Sau96I	GGNCC	2 cut(s)	92, 270
ScaI	AGTACT	2 cut(s)	598, 1639
SchI	GAGTC	5 cut(s)	14, 493, 1237, 1742, 1875
ScrFI	CCNGG	1 cut(s)	401
SfaNI	GCATC	4 cut(s)	148, 1082, 1252, 1891
SfcI	CTRYAG	1 cut(s)	1347
Sfr274I	CTCGAG	1 cut(s)	1750
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	1750
SmiMI	CAYNNNNRTG	3 cut(s)	225, 1007, 1163
SmlI	CTYRAG	6 cut(s)	349, 1451, 1633, 1750, 1778, 1928
SmoI	CTYRAG	6 cut(s)	349, 1451, 1633, 1750, 1778, 1928
SpeI	ACTAGT	3 cut(s)	593, 1532, 1840
SphI	GCATGC	1 cut(s)	1715
SsiI	CCGC	3 cut(s)	778, 1122, 1429
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	6 cut(s)	210, 594, 1032, 1533, 1608, 1841
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	209, 1285
TaaI	ACNGT	2 cut(s)	519, 1697
TaiI	ACGT	3 cut(s)	29, 1299, 1531
TaqI	TCGA	5 cut(s)	224, 285, 757, 1051, 1751
TatI	WGTACW	2 cut(s)	596, 1637
TfiI	GAWTC	4 cut(s)	287, 1110, 1220, 1553
Tru1I	TTAA	9 cut(s)	350, 426, 588, 648, 867, 1043, 1320, 1623, 1722
Tru9I	TTAA	9 cut(s)	350, 426, 588, 648, 867, 1043, 1320, 1623, 1722
TscAI	CASTG	4 cut(s)	524, 830, 1360, 1968
TseFI	GTSAC	7 cut(s)	31, 143, 236, 1177, 1240, 1535, 1963
TseI	GCWGC	3 cut(s)	1232, 1346, 1924
Tsp45I	GTSAC	7 cut(s)	31, 143, 236, 1177, 1240, 1535, 1963
TspDTI	ATGAA	3 cut(s)	89, 939, 1047
TspGWI	ACGGA	4 cut(s)	52, 169, 907, 1913
TspRI	CASTG	4 cut(s)	524, 830, 1360, 1968
Vha464I	CTTAAG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	92
VspI	ATTAAT	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	914
XapI	RAATTY	3 cut(s)	201, 355, 805
XbaI	TCTAGA	1 cut(s)	1031
XceI	RCATGY	3 cut(s)	378, 526, 1715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XhoI	CTCGAG	1 cut(s)	1750
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	6 cut(s)	210, 594, 1032, 1533, 1608, 1841
ZrmI	AGTACT	2 cut(s)	598, 1639
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.