Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Forward (+)

13173812 .. 13179937

Gene Structure 6126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGTCCTCCGCCGTCAAGCAAGAAATCCCGGAACTCTCCTCCGCCGAGAAAACCACCGCAATCCCCAGTCCCCCGCCGATCGACATCAGCAGCGACAGTGAGAGCAGTAGTAACTCCGTCGATTCTTCTTCGGACATCGACGACCTAGAGACCACTTCCTTGATCGAGTCCATCACGTGCAAGTCAAGGAACGAACGTAACTTCGATGAAGCCCCTCCGGCGAAGAAAACGAAACGCGACGGCGAATCCTCGTTGCCGCTAGGGTTTCCGGAACCGGTGACGGCGGCGGTGCCGTTGGCAATGGCTCGGGTGTTGCCGGACTCAACGTGCGTGACACGGAAAATTGGGGATAAAAATAGTAATAATATGAATGATAATCAAGTAGGTCCAGTTTTACGGGGTTGCAAGCAGTTTTGGAAAGCTGGGGATTATGAGGGTGGCAAGGACAACGATGCTAATTCTGCCTTTTCTTCCGTTGGCATGGATCATGCGAGAATTCACCCTAGGTTTCTGCATTCGAATGCCACCAGTCACAAATGGGCTTTGGGAGCTTTTGCAGAGCTGCTAGACAATTCTTTAGATGAGGTCTGCAATGGAGCCACTTATGTTAATATTGACATGGCAAGAAATAAAAAAGATGGTAATCTGATGATTGAGGTGGAAGATAATGGTGGCGGAATGACTCCTGATAAAATGAGACAGTGCATGTCTCTTGGGTATTCAGTGAAAAGCAAAATGGCAAATACAATTGGTCAATATGGCAATGGGTTTAAGACTAGTACTATGAGACTTGGAGCAGATGTTATAGTGTTCTCTCGTTGTCAGGGGATTAATGGAACAAGCCCAACACAGACCATTGGATTGCTATCTTACAATTTCCTGAGGGGTACTGGAAAGGAAGATATAGTTGTTCCCATGATTGACTATGAGAAAAGTGGTCGAGGTTGGAACAAGATGATGCGGGCTTCTCCAGATGATTGGACAAGAAATTTAGCAACCATTGTGCAGTGGTCTCCTTATTCAAGTGAAGAAGATCTTCTTCAGCAATTTAAGTTATTTAGAGGGCATGGCACACGGATAGTAATATACAACCTTTGGGAGGATGATGAAGGACATCTGGAACTTGATTTTGATACTGATCCCCATGACATTCAAATTAGAGGAGTCAACAGGGATGAGAAGAGCATTCAGATGTCAAAAAAACATCCCAATTCTAGACACTTTTTAACTTATCGACATTCATTGAGGAGTTATGCATCAATTCTCTATCTCAGGCTTCCATCTCACTTTAGAATCATTCTGCGCGGGCAAGATATCAAACATCACAATATAGTGAATGACATGATGATGACGAAGGTGGTGACGTACAGACCTGTAAATCTCCCAGAAGGAATGCCAAAAGCTTCAAATATGGTTGCCAAAGTGACTCTTGGTTTTGTGAAGGATGCACGCTCTCATATTGATATCCAAGGGTTCAATGTTTATCATAAAAATAGACTGATTAAGCCTTTTTGGCGTGTTTGGAATGCTGCAGGCAGTGATGGTCGTGGAGTTATAGGTGTGTTGGAAGCTAATTTTGTTGAACCAGCTCACGACAAACAGGGCTTTGAGCGGACAAATGTTCTCCAAAGACTTGAGCAACGATTGATTGGAATGCAAAAGGAGTTCTGGTCTAAAAATTGCCAGATTGTTGGCTATGCTCCAAGAAGACGTACTACTGACTTTCCAGAAAGGGATTCTTCAGTATCTGATAAAGAGAAATCACCCAGAAATCAGAATGGTCATGGTTCTAGTAGTGGAGGGTTTAAGGCAAGCTCAAGTAAAAAACTCGAAAAAGGATCATCGCCTGTGAATGCTGAAAGTGAAGATGGGAACTGTAATGAGGCATTGCATGCTTCCATTAAACCTCAGCAAGATCATGCGTCAGACTCAAGGGATGTTCGCATACCTTTGAAAATAGCTGATACAAATGGAGAGGGACAAGTCACAACGGACCATGTAATTGAGCGTTCGATTATGTTGAGAACAGATTCATCAATTGTGGAAAGATTGGAGGAGGCTCTAAATGATCTCAATCATGAAAGAGATAGGTGTAAATCTCTTAAAACTGAAATTGAGAAGGCAAACGAAAGAATAGAAGAGTTGGACAAAGAGCAAGAAGCACTTATTCAGATACTAGTGGCAGAAAAGACTGAAAGAGAACAGGAGGAAGAACGACTCAGGAAAAGCCTAACGGATGCTTCTAAAACCATTGATGAGCTGCTTGAGAAGGTGAAGCGATTAGAAGGAAGGACGCCAGTGACCTGCAAAGTTGAAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

775

Amino Acids

86.76

Weight (kDa)

6.35

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	183 - 279	2.5e-17	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	184 - 263	6.2e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	413 - 557	4e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2312
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	1612
AccII	CGCG	2 cut(s)	237, 1305
AccIII	TCCGGA	1 cut(s)	268
AclWI	GGATC	3 cut(s)	492, 1133, 1846
AcsI	RAATTY	2 cut(s)	495, 988
AcuI	CTGAAG	2 cut(s)	1025, 1725
AcvI	CACGTG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	2294
AfaI	GTAC	4 cut(s)	781, 889, 1367, 1714
AfiI	CCNNNNNNNGG	1 cut(s)	1099
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	7 cut(s)	1023, 1154, 1407, 1477, 1583, 1954, 2315
AhlI	ACTAGT	2 cut(s)	776, 2176
AluBI	AGCT	9 cut(s)	422, 551, 562, 1403, 1571, 1589, 1815, 1961, 2260
AluI	AGCT	9 cut(s)	422, 551, 562, 1403, 1571, 1589, 1815, 1961, 2260
Alw26I	GTCTC	5 cut(s)	143, 691, 714, 781, 1017
AlwI	GGATC	3 cut(s)	492, 1133, 1846
AlwNI	CAGNNNCTG	1 cut(s)	1748
Ama87I	CYCGRG	1 cut(s)	306
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	90, 562, 1529, 2260
ApoI	RAATTY	2 cut(s)	495, 988
AseI	ATTAAT	1 cut(s)	831
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	2 cut(s)	1035, 2029
AspA2I	CCTAGG	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	1305
AspS9I	GGNCC	2 cut(s)	386, 1993
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	5 cut(s)	289, 491, 1372, 1755, 2284
AsuII	TTCGAA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	2 cut(s)	386, 1993
AvrII	CCTAGG	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	881
BanI	GGYRCC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	1699, 1731
BbrPI	CACGTG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	1714
BbvCI	CCTCAGC	1 cut(s)	1908
BbvI	GCAGC	4 cut(s)	102, 549, 1516, 2247
BccI	CCATC	5 cut(s)	179, 632, 1288, 1535, 1862
BceAI	ACGGC	3 cut(s)	256, 277, 297
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	5 cut(s)	143, 691, 714, 781, 1017
BcuI	ACTAGT	2 cut(s)	776, 2176
BfaI	CTAG	8 cut(s)	146, 260, 504, 566, 777, 1215, 1791, 2177
BfmI	CTRYAG	1 cut(s)	1530
BfuAI	ACCTGC	1 cut(s)	2312
BglI	GCCNNNNNGGC	2 cut(s)	218, 1513
BglII	AGATCT	1 cut(s)	1033
BisI	GCNGC	6 cut(s)	91, 257, 285, 563, 1530, 2261
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	6 cut(s)	92, 258, 286, 564, 1531, 2262
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	386, 1993
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	386, 1993
BmiI	GGNNCC	3 cut(s)	273, 291, 598
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	5 cut(s)	442, 948, 1265, 1435, 2227
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	1714
BpmI	CTGGAG	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	1908
Bpu14I	TTCGAA	1 cut(s)	518
BpuEI	CTTGAG	4 cut(s)	1655, 1801, 1915, 2285
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	5 cut(s)	83, 642, 865, 1137, 2073
BsaHI	GRCGYC	1 cut(s)	2294
BsaI	GGTCTC	2 cut(s)	143, 1017
BsaJI	CCNNGG	2 cut(s)	503, 1468
BsaWI	WCCGGW	2 cut(s)	268, 274
BsaXI	ACNNNNNCTCC	4 cut(s)	786, 816, 1655, 1685
Bsc4I	CCNNNNNNNGG	1 cut(s)	1099
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	5 cut(s)	66, 389, 528, 895, 2297
Bse21I	CCTNAGG	1 cut(s)	881
Bse3DI	GCAATG	4 cut(s)	306, 598, 769, 1886
Bse8I	GATNNNNATC	5 cut(s)	83, 642, 865, 1137, 2073
BseAI	TCCGGA	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	503, 1468
BseGI	GGATG	6 cut(s)	1108, 1180, 1204, 1450, 1942, 2242
BseJI	GATNNNNATC	5 cut(s)	83, 642, 865, 1137, 2073
BseLI	CCNNNNNNNGG	1 cut(s)	1099
BseMI	GCAATG	4 cut(s)	306, 598, 769, 1886
BseMII	CTCAG	4 cut(s)	872, 1285, 1922, 2233
BseNI	ACTGG	5 cut(s)	66, 389, 528, 895, 2297
BseRI	GAGGAG	4 cut(s)	28, 1176, 1261, 2069
BseXI	GCAGC	4 cut(s)	102, 549, 1516, 2247
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	1025
Bsh1236I	CGCG	2 cut(s)	237, 1305
Bsh1285I	CGRYCG	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	289
BshTI	ACCGGT	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	29, 218, 269, 275, 317
BslFI	GGGAC	2 cut(s)	54, 1992
BslI	CCNNNNNNNGG	1 cut(s)	1099
BsmAI	GTCTC	5 cut(s)	143, 691, 714, 781, 1017
BsmFI	GGGAC	2 cut(s)	54, 1992
BsmI	GAATGC	7 cut(s)	514, 526, 1185, 1398, 1531, 1659, 1858
Bso31I	GGTCTC	2 cut(s)	143, 1017
BsoBI	CYCGRG	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	518
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
BspCNI	CTCAG	4 cut(s)	873, 1284, 1921, 2232
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	237, 1305
BspHI	TCATGA	1 cut(s)	2077
BspLI	GGNNCC	3 cut(s)	273, 291, 598
BspMAI	CTGCAG	1 cut(s)	1534
BspMI	ACCTGC	1 cut(s)	2312
BspPI	GGATC	3 cut(s)	492, 1133, 1846
BspQI	GCTCTTC	1 cut(s)	1175
BspT104I	TTCGAA	1 cut(s)	518
BspT107I	GGYRCC	1 cut(s)	289
BspTNI	GGTCTC	2 cut(s)	143, 1017
BsrBI	CCGCTC	1 cut(s)	1612
BsrDI	GCAATG	4 cut(s)	306, 598, 769, 1886
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	5 cut(s)	66, 389, 528, 895, 2297
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	503, 1468
BssMI	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
BssNI	GRCGYC	1 cut(s)	2294
BssT1I	CCWWGG	2 cut(s)	503, 1468
Bst4CI	ACNGT	3 cut(s)	98, 702, 1877
Bst6I	CTCTTC	2 cut(s)	1175, 2133
BstACI	GRCGYC	1 cut(s)	2294
BstAPI	GCANNNNNTGC	1 cut(s)	1892
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	7 cut(s)	407, 963, 1307, 1450, 1534, 1813, 1893
BstDEI	CTNAG	4 cut(s)	881, 1271, 1908, 2219
BstENI	CCTNNNNNAGG	1 cut(s)	1097
BstF5I	GGATG	6 cut(s)	1108, 1180, 1204, 1450, 1942, 2242
BstFNI	CGCG	2 cut(s)	237, 1305
BstHHI	GCGC	1 cut(s)	1305
BstKTI	GATC	8 cut(s)	81, 165, 487, 1036, 1141, 1841, 1918, 2071
BstMAI	GTCTC	5 cut(s)	143, 691, 714, 781, 1017
BstMBI	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 461, 548, 1513, 1892
BstNSI	RCATGY	2 cut(s)	709, 1895
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	1530
BstUI	CGCG	2 cut(s)	237, 1305
BstV1I	GCAGC	4 cut(s)	102, 549, 1516, 2247
BstV2I	GAAGAC	1 cut(s)	1714
BstX2I	RGATCY	1 cut(s)	1033
BstXI	CCANNNNNNTGG	2 cut(s)	978, 1691
BstYI	RGATCY	1 cut(s)	1033
Bsu36I	CCTNAGG	1 cut(s)	881
BtgZI	GCGATG	1 cut(s)	1827
BtsCI	GGATG	6 cut(s)	1108, 1180, 1204, 1450, 1942, 2242
BtsI	GCAGTG	2 cut(s)	1013, 1543
BtsIMutI	CAGTG	6 cut(s)	103, 707, 729, 1013, 1543, 2304
BveI	ACCTGC	1 cut(s)	2312
Cac8I	GCNNGC	7 cut(s)	407, 963, 1307, 1450, 1534, 1813, 1893
CaiI	CAGNNNCTG	1 cut(s)	1748
CciI	TCATGA	1 cut(s)	2077
CfoI	GCGC	1 cut(s)	1305
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	386, 1993
CseI	GACGC	2 cut(s)	1911, 2302
Csp6I	GTAC	4 cut(s)	780, 888, 1366, 1713
CspAI	ACCGGT	1 cut(s)	274
CviQI	GTAC	4 cut(s)	780, 888, 1366, 1713
DdeI	CTNAG	4 cut(s)	881, 1271, 1908, 2219
DpnI	GATC	8 cut(s)	80, 164, 486, 1035, 1140, 1840, 1917, 2070
DpnII	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
Eam1104I	CTCTTC	2 cut(s)	1175, 2133
EarI	CTCTTC	2 cut(s)	1175, 2133
EciI	GGCGGA	2 cut(s)	31, 690
Eco130I	CCWWGG	2 cut(s)	503, 1468
Eco31I	GGTCTC	2 cut(s)	143, 1017
Eco32I	GATATC	2 cut(s)	1315, 1465
Eco47I	GGWCC	2 cut(s)	386, 1993
Eco57I	CTGAAG	2 cut(s)	1025, 1725
Eco72I	CACGTG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	1097
EcoRI	GAATTC	1 cut(s)	495
EcoRV	GATATC	2 cut(s)	1315, 1465
EcoT14I	CCWWGG	2 cut(s)	503, 1468
EcoT22I	ATGCAT	1 cut(s)	1258
ErhI	CCWWGG	2 cut(s)	503, 1468
FaqI	GGGAC	2 cut(s)	54, 1992
FauI	CCCGC	3 cut(s)	81, 954, 1298
Fnu4HI	GCNGC	6 cut(s)	91, 257, 285, 563, 1530, 2261
FokI	GGATG	6 cut(s)	1115, 1187, 1191, 1457, 1949, 2249
Fsp4HI	GCNGC	6 cut(s)	91, 257, 285, 563, 1530, 2261
FspBI	CTAG	8 cut(s)	146, 260, 504, 566, 777, 1215, 1791, 2177
GlaI	GCGC	1 cut(s)	1304
GluI	GCNGC	6 cut(s)	91, 257, 285, 563, 1530, 2261
GsaI	CCCAGC	1 cut(s)	426
GsuI	CTGGAG	1 cut(s)	954
HapII	CCGG	5 cut(s)	29, 218, 269, 275, 317
HgaI	GACGC	2 cut(s)	1911, 2302
HhaI	GCGC	1 cut(s)	1305
Hin1I	GRCGYC	1 cut(s)	2294
Hin6I	GCGC	1 cut(s)	1303
HinP1I	GCGC	1 cut(s)	1303
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HindIII	AAGCTT	1 cut(s)	1401
HpaII	CCGG	5 cut(s)	29, 218, 269, 275, 317
HphI	GGTGA	5 cut(s)	289, 491, 1372, 1755, 2284
Hpy166II	GTNNAC	1 cut(s)	1168
Hpy188I	TCNGA	7 cut(s)	133, 648, 1191, 1750, 1776, 1927, 2172
Hpy8I	GTNNAC	1 cut(s)	1168
Hpy99I	CGWCG	3 cut(s)	122, 143, 242
HpyAV	CCTTC	8 cut(s)	1103, 1348, 1382, 1435, 2113, 2263, 2279, 2283
HpyCH4III	ACNGT	3 cut(s)	98, 702, 1877
HpyCH4IV	ACGT	5 cut(s)	176, 196, 326, 1364, 1711
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 461, 548, 1513, 1892
HpyF3I	CTNAG	4 cut(s)	881, 1271, 1908, 2219
HpySE526I	ACGT	5 cut(s)	176, 196, 326, 1364, 1711
Hsp92I	GRCGYC	1 cut(s)	2294
HspAI	GCGC	1 cut(s)	1303
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
LguI	GCTCTTC	1 cut(s)	1175
LmnI	GCTCC	4 cut(s)	548, 596, 794, 1705
Lsp1109I	GCAGC	4 cut(s)	102, 549, 1516, 2247
LweI	GCATC	5 cut(s)	442, 948, 1265, 1435, 2227
MaeI	CTAG	8 cut(s)	146, 260, 504, 566, 777, 1215, 1791, 2177
MaeII	ACGT	5 cut(s)	176, 196, 326, 1364, 1711
MaeIII	GTNAC	9 cut(s)	110, 197, 277, 331, 530, 1360, 1423, 1984, 2299
MalI	GATC	8 cut(s)	80, 164, 486, 1035, 1140, 1840, 1917, 2070
MbiI	CCGCTC	1 cut(s)	1612
MboI	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
MfeI	CAATTG	2 cut(s)	747, 2037
MflI	RGATCY	1 cut(s)	1033
MlyI	GAGTC	7 cut(s)	176, 314, 676, 1173, 1420, 1922, 2211
MmeI	TCCRAC	3 cut(s)	926, 1545, 2124
Mph1103I	ATGCAT	1 cut(s)	1258
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	2 cut(s)	1035, 2029
MseI	TTAA	9 cut(s)	609, 771, 831, 1050, 1226, 1503, 1806, 1902, 2103
MslI	CAYNNNNRTG	3 cut(s)	519, 1190, 1346
MspI	CCGG	5 cut(s)	29, 218, 269, 275, 317
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	2 cut(s)	747, 2037
Mva1269I	GAATGC	7 cut(s)	514, 526, 1185, 1398, 1531, 1659, 1858
MvnI	CGCG	2 cut(s)	237, 1305
MwoI	GCNNNNNNNGC	5 cut(s)	218, 461, 548, 1513, 1892
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
NlaIV	GGNNCC	3 cut(s)	273, 291, 598
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	7 cut(s)	277, 331, 530, 1360, 1423, 1984, 2299
NsiI	ATGCAT	1 cut(s)	1258
NspI	RCATGY	2 cut(s)	709, 1895
NspV	TTCGAA	1 cut(s)	518
PaeI	GCATGC	1 cut(s)	1895
PagI	TCATGA	1 cut(s)	2077
PciSI	GCTCTTC	1 cut(s)	1175
PctI	GAATGC	7 cut(s)	514, 526, 1185, 1398, 1531, 1659, 1858
PdmI	GAANNNNTTC	2 cut(s)	1035, 2029
PfeI	GAWTC	5 cut(s)	122, 245, 1293, 1736, 2030
PfoI	TCCNGGA	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	92, 258, 286, 564, 1531, 2262
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	7 cut(s)	175, 314, 676, 1172, 1420, 1922, 2211
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	7 cut(s)	175, 314, 676, 1172, 1420, 1922, 2211
Ppu21I	YACGTR	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	831
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	3 cut(s)	273, 291, 598
PspPI	GGNCC	2 cut(s)	386, 1993
PstI	CTGCAG	1 cut(s)	1534
PstNI	CAGNNNCTG	1 cut(s)	1748
PsuI	RGATCY	1 cut(s)	1033
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	4 cut(s)	781, 889, 1367, 1714
RsaNI	GTAC	4 cut(s)	780, 888, 1366, 1713
RseI	CAYNNNNRTG	3 cut(s)	519, 1190, 1346
SapI	GCTCTTC	1 cut(s)	1175
SaqAI	TTAA	9 cut(s)	609, 771, 831, 1050, 1226, 1503, 1806, 1902, 2103
SatI	GCNGC	6 cut(s)	91, 257, 285, 563, 1530, 2261
Sau3AI	GATC	8 cut(s)	78, 162, 484, 1033, 1138, 1838, 1915, 2068
Sau96I	GGNCC	2 cut(s)	386, 1993
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	7 cut(s)	176, 314, 676, 1173, 1420, 1922, 2211
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	5 cut(s)	442, 948, 1265, 1435, 2227
SfcI	CTRYAG	1 cut(s)	1530
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	2 cut(s)	386, 1993
SmiMI	CAYNNNNRTG	3 cut(s)	519, 1190, 1346
SmlI	CTYRAG	4 cut(s)	1634, 1816, 1930, 2264
SmoI	CTYRAG	4 cut(s)	1634, 1816, 1930, 2264
SpeI	ACTAGT	2 cut(s)	776, 2176
SphI	GCATGC	1 cut(s)	1895
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	8 cut(s)	146, 260, 504, 566, 777, 1215, 1791, 2177
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	503, 1468
TaaI	ACNGT	3 cut(s)	98, 702, 1877
TaiI	ACGT	5 cut(s)	179, 199, 329, 1367, 1714
TatI	WGTACW	1 cut(s)	779
TauI	GCSGC	2 cut(s)	259, 287
TfiI	GAWTC	5 cut(s)	122, 245, 1293, 1736, 2030
Tru1I	TTAA	9 cut(s)	609, 771, 831, 1050, 1226, 1503, 1806, 1902, 2103
Tru9I	TTAA	9 cut(s)	609, 771, 831, 1050, 1226, 1503, 1806, 1902, 2103
TscAI	CASTG	6 cut(s)	103, 707, 729, 1013, 1543, 2304
TseFI	GTSAC	7 cut(s)	277, 331, 530, 1360, 1423, 1984, 2299
TseI	GCWGC	4 cut(s)	90, 562, 1529, 2260
Tsp45I	GTSAC	7 cut(s)	277, 331, 530, 1360, 1423, 1984, 2299
TspDTI	ATGAA	6 cut(s)	222, 383, 1122, 1230, 2022, 2094
TspGWI	ACGGA	6 cut(s)	106, 352, 463, 1090, 2006, 2249
TspRI	CASTG	6 cut(s)	103, 707, 729, 1013, 1543, 2304
VpaK11BI	GGWCC	2 cut(s)	386, 1993
VspI	ATTAAT	1 cut(s)	831
XagI	CCTNNNNNAGG	1 cut(s)	1097
XapI	RAATTY	2 cut(s)	495, 988
XbaI	TCTAGA	1 cut(s)	1214
XceI	RCATGY	2 cut(s)	709, 1895
XmaJI	CCTAGG	1 cut(s)	503
XmnI	GAANNNNTTC	2 cut(s)	1035, 2029
XspI	CTAG	8 cut(s)	146, 260, 504, 566, 777, 1215, 1791, 2177
ZrmI	AGTACT	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.