Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013838

Physical Location & Seq

Genomic Coordinates Reverse (-)

51749343 .. 51757913

Gene Structure 8571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG295500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGTCCTCCGCCGTCAAGCAAGAAATCCCGGAACTCTCCTCCGCCGAGAAAACCGCCGGAATCCCCAATCCCTCGCCGATCGACATCAGCAGCGACTGTGAGAGCAGTAGTAACTCCGTCGATTCTTCTTCCGACATCGACGACCTAGAGACCACTTCCTTGATCGAGTCCATCACGTGCAAGTCAAGGAACGAACGTAACTTCGATGAAGCCCCTCCGGCGAAGAAAACGAAACGCGACGGCGAATCCTCGTTGCGGCTAGGGTTTCCTGAACCGGTGCCGCTCAACTTGCCGGTGACGGCGGCGGTGCCGTTGGCAATGGCTCGGGTGTTGCCGGACTCAACGTGCGTGACACGGAAAATTGGGGATAAAAATAGTAATAATATCAATATGAATGATAATCAAGTAGGTCCAGTTTTACGGGGTTGCAAGCAGTTTTGGAAAGCTGGGGATTATGAGGGTGACAAGGACAACGATGCTAATTCTGCCTTTTCTTCCGTTGGCATGGATCATGCGAGAATTCACCCTAGGTTTCTGCATTCGAATGCCACCAGTCACAAATGGGCTTTGGGAGCTTTTGCAGAGCTGCTAGACAATTCTTTAGATGAGGTCTGCAATGGAGCCACTTATGTTAATATTGACATGGCAAGAAATAAAAAAGATGGTAATCTGATGATTGAGGTGGAAGATAATGGTGGTGGAATGACTCCTGATAAAATGAGACAGTGCATGTCTCTTGGGTATTCAGCAAAAAGCAAAATGGCAAATACAATTGGTCAATATGGCAATGGGTTTAAGACTAGTACTATGAGACTTGGAGCAGATGTTATAGTGTTCTCTCGTTGTCAGGGGATTAATGGAACAAGCCCAACACAGACCATTGGACTGCTATCTTACAATTTCCTGAGGGGTACTGGAAAGGAAGATATAGTTGTTCCCATGATTGACTATGAGAAAAGTGGTCGAGGTTGGAACAAGATGATGCGGGCTTCTCCAGATGATTGGACAAGAAATTTAGCAACCATTGTGCAGTGGTCTCCTTATTCAAGTGAAGAAGATCTTCTTCAGCAATTTAAGTTATTTAGAGGGCATGGCACACGGATAGTAATATACAACCTTTGGGAGGATGATGAAGGACATCTGGAACTTGATTTTGATACTGATCCCCATGACATTCAAATTAGAGGGGTCAACAGGGATGAGAAGAGCATTCAGATGTCAAAAAAATATCCCAATTCTAGACACTTTTTAACTTATCGACATTCATTGAGGAGTTATGCATCAATTCTCTATCTCAGGCTTCCAGCTCACTTTAGAATCATTCTGCGCGGGCAAGATATCAAACATCACAATATAGTGAATGACATGATGATGACGAAGGTGGTGACGTACAGACCTGTAAATCTCCCAGAGGGAATGCCAAAAGATTCAAATATGGCTGCCAAAGTGACTCTTGGGTTTGTGAAGGATGCACGCTCTCATATTGATATCCAAGGGTTCAACGTTTATCATAAAAATAGACTGATTAAGCCTTTCTGGCGTGTTTGGAATGCTGCCGGCAGTGATGGTCGTGGAGTTATAGGTGTGTTGGAAGCTAATTTTGTTGAACCAGCTCACGACAAACAGGGCTTTGAGCGGACAAATGTTCTCCAAAGACTTGAGCAACGATTGATTGGAATGCAAAAGGAGTTCTGGTCTAAAAATTGCCAGATTGTTGGCTATGCTCCAAGAAGACGTACTAGTGACTTTCCAGAAAGAGATTCTTCAGTATCTGATAAAGAGAAATCACCCAGAAATCAGAATGGTCATGGTTCTAGTAGTGGAGGGTTTAAGGCAAGCTCAAGTAAAAAACTCAAAAAAGGATCATCGCCTGTGAATGCTGAAAGTGAAGATGGGAACTGTAATGACGCATTGCATGCTTCCATTAAACCTCAGCAAGATCATGCGTCAGACTCAAGGGAGGTTAGCATACCTTTGAAAATAGCTGATACAAATGGAGAGGGACAAGTCACAACAGACCATGTAATTGAGCGTTCGATTATGTTGAGAACAGATTCATCGATTGTGGAAAGATTGGAGGAGGCTCTAAATGATCTCAATCATGAAAGAGATAGGTGTAAATCTCTTAAAACTGAAGTAAGTGCACAGTTGGTTAGGTTGAGTTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031935 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

723

Amino Acids

80.65

Weight (kDa)

6.87

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	191 - 287	9.5e-18	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	192 - 271	4e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	421 - 565	3.7e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13130 AT5G13130
fragaria_vesca	FvH4_4g23220
malus_domestica	MD13G1123700.v1.1
prunus_persica	Prupe.1G221200_v2.0.a1
pyrus_communis	pycom13g10820
rosa_chinensis	RchiOBHm_Chr4g0429571
rosa_laevigata	RLG00000007060
rosa_multiflora	Rmu_co8379671.1_g000001
rosa_roxburghii	Rroxscaffold_5G00371270
rosa_rugosa	Rorug04G0237200 Rorug04G0237300
rosa_samantha	Rh4AG293000 Rh4BG298700 Rh4CG314000 Rh4DG295500
rosa_wichuraiana	Rw4G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	277, 307
AccBSI	CCGCTC	2 cut(s)	283, 1636
AccII	CGCG	2 cut(s)	237, 1329
AclI	AACGTT	1 cut(s)	1503
AclWI	GGATC	3 cut(s)	516, 1157, 1870
AcsI	RAATTY	2 cut(s)	519, 1012
AcuI	CTGAAG	3 cut(s)	1049, 1749, 2154
AcvI	CACGTG	1 cut(s)	177
AfaI	GTAC	4 cut(s)	805, 913, 1391, 1738
AfiI	CCNNNNNNNGG	2 cut(s)	255, 1123
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	1047, 1178, 1431, 1501, 1607, 1978
AhlI	ACTAGT	2 cut(s)	800, 1739
AluBI	AGCT	8 cut(s)	446, 575, 586, 1307, 1595, 1613, 1839, 1985
AluI	AGCT	8 cut(s)	446, 575, 586, 1307, 1595, 1613, 1839, 1985
Alw21I	GWGCWC	1 cut(s)	2146
Alw26I	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
Alw44I	GTGCAC	1 cut(s)	2142
AlwI	GGATC	3 cut(s)	516, 1157, 1870
AlwNI	CAGNNNCTG	2 cut(s)	96, 1772
Ama87I	CYCGRG	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	2142
ApeKI	GCWGC	4 cut(s)	90, 586, 1439, 1553
ApoI	RAATTY	2 cut(s)	519, 1012
AseI	ATTAAT	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	274
Asp700I	GAANNNNTTC	2 cut(s)	1059, 2053
AspA2I	CCTAGG	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	1329
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	5 cut(s)	307, 473, 515, 1396, 1779
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	410
AvrII	CCTAGG	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	2146
BanI	GGYRCC	2 cut(s)	277, 307
BbrPI	CACGTG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	1738
Bbv12I	GWGCWC	1 cut(s)	2146
BbvCI	CCTCAGC	1 cut(s)	1932
BbvI	GCAGC	4 cut(s)	102, 573, 1426, 1540
BccI	CCATC	4 cut(s)	179, 656, 1559, 1886
BceAI	ACGGC	3 cut(s)	256, 295, 315
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BcuI	ACTAGT	2 cut(s)	800, 1739
BfaI	CTAG	8 cut(s)	146, 260, 528, 590, 801, 1239, 1740, 1815
BglI	GCCNNNNNGGC	2 cut(s)	218, 1537
BglII	AGATCT	1 cut(s)	1057
BisI	GCNGC	7 cut(s)	91, 257, 281, 303, 587, 1440, 1554
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	7 cut(s)	92, 258, 282, 304, 588, 1441, 1555
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	3 cut(s)	279, 309, 622
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	4 cut(s)	466, 972, 1289, 1459
BpiI	GAAGAC	1 cut(s)	1738
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	1 cut(s)	1932
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	3 cut(s)	1679, 1825, 1939
BpuMI	CCSGG	1 cut(s)	29
Bsa29I	ATCGAT	1 cut(s)	2060
BsaAI	YACGTR	1 cut(s)	177
BsaBI	GATNNNNATC	4 cut(s)	83, 666, 1161, 2097
BsaI	GGTCTC	2 cut(s)	143, 1041
BsaJI	CCNNGG	2 cut(s)	527, 1492
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	810, 840, 1679, 1709
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 1123
Bse118I	RCCGGY	3 cut(s)	274, 292, 1556
Bse1I	ACTGG	3 cut(s)	413, 552, 919
Bse21I	CCTNAGG	1 cut(s)	905
Bse3DI	GCAATG	4 cut(s)	324, 622, 793, 1910
Bse8I	GATNNNNATC	4 cut(s)	83, 666, 1161, 2097
BseCI	ATCGAT	1 cut(s)	2060
BseDI	CCNNGG	2 cut(s)	527, 1492
BseGI	GGATG	3 cut(s)	1132, 1204, 1474
BseJI	GATNNNNATC	4 cut(s)	83, 666, 1161, 2097
BseLI	CCNNNNNNNGG	2 cut(s)	255, 1123
BseMI	GCAATG	4 cut(s)	324, 622, 793, 1910
BseMII	CTCAG	3 cut(s)	896, 1309, 1946
BseNI	ACTGG	3 cut(s)	413, 552, 919
BseRI	GAGGAG	3 cut(s)	28, 1285, 2093
BseSI	GKGCMC	1 cut(s)	2146
BseXI	GCAGC	4 cut(s)	102, 573, 1426, 1540
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	1049
Bsh1236I	CGCG	2 cut(s)	237, 1329
Bsh1285I	CGRYCG	1 cut(s)	81
BshNI	GGYRCC	2 cut(s)	277, 307
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	2060
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	2146
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 1557
BslFI	GGGAC	1 cut(s)	2016
BslI	CCNNNNNNNGG	2 cut(s)	255, 1123
BsmAI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BsmFI	GGGAC	1 cut(s)	2016
BsmI	GAATGC	7 cut(s)	538, 550, 1209, 1422, 1555, 1683, 1882
Bso31I	GGTCTC	2 cut(s)	143, 1041
BsoBI	CYCGRG	1 cut(s)	324
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	2146
Bsp143I	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
BspCNI	CTCAG	3 cut(s)	897, 1308, 1945
BspDI	ATCGAT	1 cut(s)	2060
BspFNI	CGCG	2 cut(s)	237, 1329
BspHI	TCATGA	1 cut(s)	2101
BspLI	GGNNCC	3 cut(s)	279, 309, 622
BspPI	GGATC	3 cut(s)	516, 1157, 1870
BspQI	GCTCTTC	1 cut(s)	1199
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	277, 307
BspTNI	GGTCTC	2 cut(s)	143, 1041
BsrBI	CCGCTC	2 cut(s)	283, 1636
BsrDI	GCAATG	4 cut(s)	324, 622, 793, 1910
BsrFI	RCCGGY	3 cut(s)	274, 292, 1556
BsrI	ACTGG	3 cut(s)	413, 552, 919
BssAI	RCCGGY	3 cut(s)	274, 292, 1556
BssECI	CCNNGG	2 cut(s)	527, 1492
BssMI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
BssT1I	CCWWGG	2 cut(s)	527, 1492
Bst4CI	ACNGT	4 cut(s)	98, 726, 1901, 2148
Bst6I	CTCTTC	1 cut(s)	1199
BstAPI	GCANNNNNTGC	1 cut(s)	1916
BstBAI	YACGTR	1 cut(s)	177
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	7 cut(s)	431, 987, 1331, 1474, 1558, 1837, 1917
BstDEI	CTNAG	3 cut(s)	905, 1295, 1932
BstENI	CCTNNNNNAGG	1 cut(s)	1121
BstF5I	GGATG	3 cut(s)	1132, 1204, 1474
BstFNI	CGCG	2 cut(s)	237, 1329
BstHHI	GCGC	1 cut(s)	1329
BstKTI	GATC	8 cut(s)	81, 165, 511, 1060, 1165, 1865, 1942, 2095
BstMAI	GTCTC	5 cut(s)	143, 715, 738, 805, 1041
BstMBI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1537, 1916
BstNSI	RCATGY	2 cut(s)	733, 1919
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	2146
BstUI	CGCG	2 cut(s)	237, 1329
BstV1I	GCAGC	4 cut(s)	102, 573, 1426, 1540
BstV2I	GAAGAC	1 cut(s)	1738
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	2 cut(s)	1002, 1715
BstYI	RGATCY	1 cut(s)	1057
Bsu15I	ATCGAT	1 cut(s)	2060
Bsu36I	CCTNAGG	1 cut(s)	905
BsuTUI	ATCGAT	1 cut(s)	2060
BtgZI	GCGATG	1 cut(s)	1851
BtsCI	GGATG	3 cut(s)	1132, 1204, 1474
BtsI	GCAGTG	2 cut(s)	1037, 1567
BtsIMutI	CAGTG	3 cut(s)	731, 1037, 1567
Cac8I	GCNNGC	7 cut(s)	431, 987, 1331, 1474, 1558, 1837, 1917
CaiI	CAGNNNCTG	2 cut(s)	96, 1772
CciI	TCATGA	1 cut(s)	2101
CfoI	GCGC	1 cut(s)	1329
Cfr10I	RCCGGY	3 cut(s)	274, 292, 1556
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	2060
CseI	GACGC	2 cut(s)	1916, 1935
Csp6I	GTAC	4 cut(s)	804, 912, 1390, 1737
CspAI	ACCGGT	1 cut(s)	274
CviQI	GTAC	4 cut(s)	804, 912, 1390, 1737
DdeI	CTNAG	3 cut(s)	905, 1295, 1932
DpnI	GATC	8 cut(s)	80, 164, 510, 1059, 1164, 1864, 1941, 2094
DpnII	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
Eam1104I	CTCTTC	1 cut(s)	1199
EarI	CTCTTC	1 cut(s)	1199
EciI	GGCGGA	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	527, 1492
Eco31I	GGTCTC	2 cut(s)	143, 1041
Eco32I	GATATC	2 cut(s)	1339, 1489
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	3 cut(s)	1049, 1749, 2154
Eco72I	CACGTG	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	905
Eco88I	CYCGRG	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	1121
EcoRI	GAATTC	1 cut(s)	519
EcoRV	GATATC	2 cut(s)	1339, 1489
EcoT14I	CCWWGG	2 cut(s)	527, 1492
EcoT22I	ATGCAT	1 cut(s)	1282
ErhI	CCWWGG	2 cut(s)	527, 1492
FalI	AAGNNNNNCTT	8 cut(s)	1044, 1076, 1047, 1079, 1437, 1469, 1747, 1779
FaqI	GGGAC	1 cut(s)	2016
FauI	CCCGC	2 cut(s)	978, 1322
Fnu4HI	GCNGC	7 cut(s)	91, 257, 281, 303, 587, 1440, 1554
FokI	GGATG	3 cut(s)	1139, 1211, 1481
Fsp4HI	GCNGC	7 cut(s)	91, 257, 281, 303, 587, 1440, 1554
FspBI	CTAG	8 cut(s)	146, 260, 528, 590, 801, 1239, 1740, 1815
GlaI	GCGC	1 cut(s)	1328
GluI	GCNGC	7 cut(s)	91, 257, 281, 303, 587, 1440, 1554
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	978
HapII	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 1557
HgaI	GACGC	2 cut(s)	1916, 1935
HhaI	GCGC	1 cut(s)	1329
Hin6I	GCGC	1 cut(s)	1327
HinP1I	GCGC	1 cut(s)	1327
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HpaII	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 1557
HphI	GGTGA	5 cut(s)	307, 473, 515, 1396, 1779
Hpy166II	GTNNAC	2 cut(s)	1192, 2144
Hpy188I	TCNGA	6 cut(s)	133, 672, 1215, 1774, 1800, 1951
Hpy188III	TCNNGA	9 cut(s)	269, 710, 904, 995, 1142, 1239, 1616, 1751, 2102
Hpy8I	GTNNAC	2 cut(s)	1192, 2144
Hpy99I	CGWCG	3 cut(s)	122, 143, 242
HpyAV	CCTTC	3 cut(s)	1127, 1372, 1459
HpyCH4III	ACNGT	4 cut(s)	98, 726, 1901, 2148
HpyCH4IV	ACGT	6 cut(s)	176, 196, 344, 1388, 1503, 1735
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1537, 1916
HpyF3I	CTNAG	3 cut(s)	905, 1295, 1932
HpySE526I	ACGT	6 cut(s)	176, 196, 344, 1388, 1503, 1735
HspAI	GCGC	1 cut(s)	1327
KroI	GCCGGC	1 cut(s)	1556
KroNI	GCCGGC	1 cut(s)	1558
Kzo9I	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
LguI	GCTCTTC	1 cut(s)	1199
LmnI	GCTCC	4 cut(s)	572, 620, 818, 1729
Lsp1109I	GCAGC	4 cut(s)	102, 573, 1426, 1540
LweI	GCATC	4 cut(s)	466, 972, 1289, 1459
MaeI	CTAG	8 cut(s)	146, 260, 528, 590, 801, 1239, 1740, 1815
MaeII	ACGT	6 cut(s)	176, 196, 344, 1388, 1503, 1735
MalI	GATC	8 cut(s)	80, 164, 510, 1059, 1164, 1864, 1941, 2094
MbiI	CCGCTC	2 cut(s)	283, 1636
MboI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	1 cut(s)	2146
MlyI	GAGTC	5 cut(s)	176, 332, 700, 1444, 1946
MmeI	TCCRAC	3 cut(s)	156, 950, 1569
Mph1103I	ATGCAT	1 cut(s)	1282
MroNI	GCCGGC	1 cut(s)	1556
MroXI	GAANNNNTTC	2 cut(s)	1059, 2053
MseI	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1527, 1830, 1926, 2127
MslI	CAYNNNNRTG	3 cut(s)	543, 1214, 1370
MspI	CCGG	7 cut(s)	29, 57, 218, 275, 293, 335, 1557
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	7 cut(s)	538, 550, 1209, 1422, 1555, 1683, 1882
MvnI	CGCG	2 cut(s)	237, 1329
MwoI	GCNNNNNNNGC	6 cut(s)	218, 289, 485, 572, 1537, 1916
NaeI	GCCGGC	1 cut(s)	1558
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
NgoMIV	GCCGGC	1 cut(s)	1556
NlaIV	GGNNCC	3 cut(s)	279, 309, 622
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	8 cut(s)	295, 349, 461, 554, 1384, 1447, 1742, 2008
NsiI	ATGCAT	1 cut(s)	1282
NspI	RCATGY	2 cut(s)	733, 1919
NspV	TTCGAA	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	1919
PagI	TCATGA	1 cut(s)	2101
PciSI	GCTCTTC	1 cut(s)	1199
PctI	GAATGC	7 cut(s)	538, 550, 1209, 1422, 1555, 1683, 1882
PdiI	GCCGGC	1 cut(s)	1558
PdmI	GAANNNNTTC	2 cut(s)	1059, 2053
PfeI	GAWTC	7 cut(s)	60, 122, 245, 1317, 1427, 1760, 2054
PfoI	TCCNGGA	1 cut(s)	27
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	7 cut(s)	92, 258, 282, 304, 588, 1441, 1555
Ple19I	CGATCG	1 cut(s)	81
PleI	GAGTC	5 cut(s)	175, 332, 700, 1444, 1946
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
PpsI	GAGTC	5 cut(s)	175, 332, 700, 1444, 1946
Ppu21I	YACGTR	1 cut(s)	177
PshBI	ATTAAT	1 cut(s)	855
Psp1406I	AACGTT	1 cut(s)	1503
PspCI	CACGTG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	279, 309, 622
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	2 cut(s)	96, 1772
PsuI	RGATCY	1 cut(s)	1057
PvuI	CGATCG	1 cut(s)	81
RsaI	GTAC	4 cut(s)	805, 913, 1391, 1738
RsaNI	GTAC	4 cut(s)	804, 912, 1390, 1737
RseI	CAYNNNNRTG	3 cut(s)	543, 1214, 1370
SapI	GCTCTTC	1 cut(s)	1199
SaqAI	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1527, 1830, 1926, 2127
SatI	GCNGC	7 cut(s)	91, 257, 281, 303, 587, 1440, 1554
Sau3AI	GATC	8 cut(s)	78, 162, 508, 1057, 1162, 1862, 1939, 2092
Sau96I	GGNCC	1 cut(s)	410
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	5 cut(s)	176, 332, 700, 1444, 1946
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	2146
SfaNI	GCATC	4 cut(s)	466, 972, 1289, 1459
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	3 cut(s)	543, 1214, 1370
SmlI	CTYRAG	3 cut(s)	1658, 1840, 1954
SmoI	CTYRAG	3 cut(s)	1658, 1840, 1954
SpeI	ACTAGT	2 cut(s)	800, 1739
SphI	GCATGC	1 cut(s)	1919
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	8 cut(s)	146, 260, 528, 590, 801, 1239, 1740, 1815
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	527, 1492
TaaI	ACNGT	4 cut(s)	98, 726, 1901, 2148
TaiI	ACGT	6 cut(s)	179, 199, 347, 1391, 1506, 1738
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	3 cut(s)	259, 283, 305
TfiI	GAWTC	7 cut(s)	60, 122, 245, 1317, 1427, 1760, 2054
Tru1I	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1527, 1830, 1926, 2127
Tru9I	TTAA	9 cut(s)	633, 795, 855, 1074, 1250, 1527, 1830, 1926, 2127
TscAI	CASTG	3 cut(s)	731, 1037, 1567
TseFI	GTSAC	8 cut(s)	295, 349, 461, 554, 1384, 1447, 1742, 2008
TseI	GCWGC	4 cut(s)	90, 586, 1439, 1553
Tsp45I	GTSAC	8 cut(s)	295, 349, 461, 554, 1384, 1447, 1742, 2008
TspDTI	ATGAA	6 cut(s)	222, 407, 1146, 1254, 2046, 2118
TspGWI	ACGGA	4 cut(s)	106, 370, 487, 1114
TspRI	CASTG	3 cut(s)	731, 1037, 1567
VneI	GTGCAC	1 cut(s)	2142
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	855
XagI	CCTNNNNNAGG	1 cut(s)	1121
XapI	RAATTY	2 cut(s)	519, 1012
XbaI	TCTAGA	1 cut(s)	1238
XceI	RCATGY	2 cut(s)	733, 1919
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	2 cut(s)	1059, 2053
XspI	CTAG	8 cut(s)	146, 260, 528, 590, 801, 1239, 1740, 1815
ZrmI	AGTACT	1 cut(s)	805
Zsp2I	ATGCAT	1 cut(s)	1282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.