pycom13g11680

DNA replication licensing factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
8056753 .. 8059448
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11680.7

Sequence Viewer

Length: 1533 bp
ATGCAGAGTTCACCCGGAAGATCACAGTCACAGCCCGAACACTCCAGAGAGACTGATGTTGACGGTGATGAGGATGATGAAGACGAAGACTTTAATATGTATTGTGTTCAGGGAATACTTAGAGAGTGGGTTACTAGAGACGAAGTGCGAAGATTCATAGGCAGAAAATTCAAAGAGTTTTTACTCACCTATGTGAAGAAGGATCGCAGTGATATCGAATGTGTGCGCCTCATTAATGAGATGGTGTTAGCCAATAAGTGTAGTCTGGAGATTGATTACAAGCAATTCATCCATGTTCATCCCAATATTGCCATTTGGTTGGCTGATGCCCCCCAGTCTGTCCTTGAAGTTATGGAAGATGTTGCCAAGAATGTTGTGTTGACTTTACACCCCAATTACAAACGTATCCATCAAAAGATCTATGTCCGGATAACTAACTTACCTGTTTACGATCAGATTCGCAACATTAGGCAGGTCCATTTGAATACCATGATTCGTATTGGAGGGGTTGTGACCCGGCGCTCTGGGGTGTTTCCCCAGTTGCAGCAAGTAAAGTATGATTGCAATAAATGTGGAGCAATCTTGGGGCCATTCTTTCAGAATTCTTATTCTGAAGTCAAAGTTGGTTCTTGCCCTGAATGCCAATCAAAAGGACCATTCAGTGTCAATATTGAGCAGGTGACGTTTTACAAATTCACATCTACAATATACAGGAACTATCAAAAGCTTACACTCCAAGAGAGCCCTGGAATTGTCCCCGCAGGTCGGCTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTAATTGATTGTGCTCGTCCAGGGGAAGAGATTGAGGTCACTGGCATTTATTCAAATAATTTTGACTTGTCTTTGAATACAAAGAACGGGTTTCCTGTATTTGCCACTGTGGTTGAAGCAAATTATATCACTAAGAAGCAAGACCTATTTTCTGCTTACAAACTTACTCAGGAAGACAAAGAAGAGATTGAAAAGTTGTCAAAAGACCCTAGAATAGGAGAAAGGCTTATCAAGTCAATTGCGCCATCAATCTATGGCCACGAGGACATAAAGACTGCAATAGCTCTTGCCATGTTTGGAGGCCAAGAGAAAAATGTTGAGGGAAAACACAGGCTAAGAGGGGATATAAATGTACTTCTCTTAGGTGATCCTGGCACGGCGAAATCACAGTTTCTTAAGTATGTTGAGAAGACTGGGCAAAGGGCTGTGTATACTACTGGTAAAGGAGCATCTGCTGTGGGGCTCACAGCAGCTGTCCACAAGATCGATCCTGTTACAAGGGAGTGGACTCTTGAAGGAGGAGCGCTTGTTCTAGCTGACAAAGGAATATGTCTTATTGATGAATTTGACAAAATGATCGATCAGGATAGGGTGAGTATTCATGAAGCAATGGAGCAGCAAAGTATTAGCATATCAAAAGCTGGGATTGTCACTTCTCTCCAAGCACGCTGCTCTGTCATTGCAGCTGCAAACCCTGTTGGAGGAAGGTCAGGATTCTACAAACGCTAG

Protein Analysis

511

Amino Acids

57.5

Weight (kDa)

7.12

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014494)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44900 AT1G44900
fragaria_vesca FvH4_4g22180
malus_domestica MD13G1134100.v1.1 MD16G1144700.v1.1
prunus_persica Prupe.1G211500_v2.0.a1
pyrus_communis pycom13g11680 pycom16g11400
rosa_chinensis RchiOBHm_Chr4g0428411
rosa_laevigata RLG00000007153
rosa_multiflora Rmu_sc0004698.1_g000003
rosa_roxburghii Rroxscaffold_5G00370080
rosa_rugosa Rorug04G0225200
rosa_samantha Rh4BG288100 Rh4CG303800 Rh4DG285200
rosa_wichuraiana Rw4G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 3 cut(s) 463, 667, 752
AccI GTMKAC 1 cut(s) 1235
AccIII TCCGGA 1 cut(s) 426
AciI CCGC 1 cut(s) 759
AclWI GGATC 3 cut(s) 210, 1166, 1286
AcoI YGGCCR 1 cut(s) 1060
AcsI RAATTY 4 cut(s) 167, 601, 692, 1367
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 1 cut(s) 1158
AfeI AGCGCT 1 cut(s) 1329
AfiI CCNNNNNNNGG 3 cut(s) 765, 1019, 1505
AflII CTTAAG 1 cut(s) 1199
AgsI TTSAA 9 cut(s) 172, 347, 484, 799, 858, 880, 920, 995, 1319
AjnI CCWGG 3 cut(s) 745, 823, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AleI CACNNNNGTG 1 cut(s) 191
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
AluBI AGCT 6 cut(s) 727, 1088, 1277, 1340, 1445, 1490
AluI AGCT 6 cut(s) 727, 1088, 1277, 1340, 1445, 1490
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 2 cut(s) 44, 132
AlwI GGATC 3 cut(s) 210, 1166, 1286
AlwNI CAGNNNCTG 1 cut(s) 1277
Aor13HI TCCGGA 1 cut(s) 426
Aor51HI AGCGCT 1 cut(s) 1329
AoxI GGCC 3 cut(s) 587, 1060, 1105
ApeKI GCWGC 6 cut(s) 544, 1274, 1420, 1473, 1487, 1490
ApoI RAATTY 4 cut(s) 167, 601, 692, 1367
AseI ATTAAT 1 cut(s) 234
AspLEI GCGC 4 cut(s) 228, 522, 1048, 1330
AspS9I GGNCC 3 cut(s) 475, 587, 653
AsuC2I CCSGG 2 cut(s) 15, 517
AsuHPI GGTGA 6 cut(s) 3, 77, 178, 691, 1181, 1408
AvaII GGWCC 2 cut(s) 475, 653
BaeI ACNNNNGTAYC 2 cut(s) 388, 421
BalI TGGCCA 1 cut(s) 1062
BanII GRGCYC 2 cut(s) 746, 1269
BauI CACGAG 1 cut(s) 1064
BbsI GAAGAC 4 cut(s) 87, 93, 984, 1220
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 6 cut(s) 556, 1286, 1432, 1460, 1477, 1499
BccI CCATC 3 cut(s) 235, 417, 1057
BceAI ACGGC 1 cut(s) 1197
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 3 cut(s) 747, 825, 1176
BciVI GTATCC 1 cut(s) 416
BcnI CCSGG 2 cut(s) 15, 517
BcoDI GTCTC 2 cut(s) 44, 132
BfaI CTAG 4 cut(s) 135, 1014, 1337, 1531
BfoI RGCGCY 2 cut(s) 523, 1331
BfrI CTTAAG 1 cut(s) 1199
BfuAI ACCTGC 3 cut(s) 463, 667, 752
BfuI GTATCC 1 cut(s) 416
BglII AGATCT 1 cut(s) 417
BisI GCNGC 6 cut(s) 545, 1275, 1421, 1474, 1488, 1491
BlsI GCNGC 6 cut(s) 546, 1276, 1422, 1475, 1489, 1492
Bme1390I CCNGG 5 cut(s) 15, 517, 747, 825, 1176
Bme18I GGWCC 2 cut(s) 475, 653
BmgT120I GGNCC 3 cut(s) 475, 587, 653
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 5 cut(s) 15, 517, 747, 825, 1176
BmrI ACTGGG 3 cut(s) 328, 532, 1227
BmsI GCATC 2 cut(s) 316, 1262
BmuI ACTGGG 3 cut(s) 328, 532, 1227
BpiI GAAGAC 4 cut(s) 87, 93, 984, 1220
BpmI CTGGAG 2 cut(s) 28, 287
BpuMI CCSGG 2 cut(s) 15, 517
Bsa29I ATCGAT 2 cut(s) 1290, 1383
BsaJI CCNNGG 2 cut(s) 745, 824
BsaWI WCCGGW 1 cut(s) 426
BsaXI ACNNNNNCTCC 4 cut(s) 495, 525, 1317, 1347
Bsc4I CCNNNNNNNGG 3 cut(s) 765, 1019, 1505
Bse1I ACTGG 5 cut(s) 334, 538, 850, 1222, 1246
Bse3DI GCAATG 2 cut(s) 1419, 1482
BseAI TCCGGA 1 cut(s) 426
BseBI CCWGG 3 cut(s) 747, 825, 1176
BseCI ATCGAT 2 cut(s) 1290, 1383
BseDI CCNNGG 2 cut(s) 745, 824
BseGI GGATG 3 cut(s) 79, 288, 298
BseLI CCNNNNNNNGG 3 cut(s) 765, 1019, 1505
BseMI GCAATG 2 cut(s) 1419, 1482
BseMII CTCAG 1 cut(s) 986
BseNI ACTGG 5 cut(s) 334, 538, 850, 1222, 1246
BseRI GAGGAG 1 cut(s) 1338
BseXI GCAGC 6 cut(s) 556, 1286, 1432, 1460, 1477, 1499
BseYI CCCAGC 1 cut(s) 1445
BshFI GGCC 3 cut(s) 589, 1062, 1107
BshVI ATCGAT 2 cut(s) 1290, 1383
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 3 cut(s) 15, 427, 517
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 3 cut(s) 765, 1019, 1505
BsmAI GTCTC 2 cut(s) 44, 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 740
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 3 cut(s) 589, 1062, 1107
Bsp1286I GDGCHC 3 cut(s) 746, 820, 1269
Bsp13I TCCGGA 1 cut(s) 426
BspACI CCGC 1 cut(s) 759
BspANI GGCC 3 cut(s) 589, 1062, 1107
BspCNI CTCAG 1 cut(s) 985
BspDI ATCGAT 2 cut(s) 1290, 1383
BspEI TCCGGA 1 cut(s) 426
BspHI TCATGA 1 cut(s) 1405
BspLI GGNNCC 1 cut(s) 588
BspMI ACCTGC 3 cut(s) 463, 667, 752
BspPI GGATC 3 cut(s) 210, 1166, 1286
BspTI CTTAAG 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 1419, 1482
BsrI ACTGG 5 cut(s) 334, 538, 850, 1222, 1246
BssECI CCNNGG 2 cut(s) 745, 824
BssNAI GTATAC 1 cut(s) 1236
BssSI CACGAG 1 cut(s) 1064
Bst1107I GTATAC 1 cut(s) 1236
Bst2BI CACGAG 1 cut(s) 1064
Bst2UI CCWGG 3 cut(s) 747, 825, 1176
Bst4CI ACNGT 4 cut(s) 27, 65, 913, 1194
Bst6I CTCTTC 2 cut(s) 825, 981
BstAFI CTTAAG 1 cut(s) 1199
BstC8I GCNNGC 1 cut(s) 1471
BstDEI CTNAG 5 cut(s) 119, 936, 972, 1139, 1165
BstENI CCTNNNNNAGG 2 cut(s) 1017, 1503
BstF5I GGATG 3 cut(s) 79, 288, 298
BstH2I RGCGCY 2 cut(s) 523, 1331
BstHHI GCGC 4 cut(s) 228, 522, 1048, 1330
BstMAI GTCTC 2 cut(s) 44, 132
BstMWI GCNNNNNNNGC 1 cut(s) 639
BstNI CCWGG 3 cut(s) 747, 825, 1176
BstSCI CCNGG 5 cut(s) 13, 515, 745, 823, 1174
BstV1I GCAGC 6 cut(s) 556, 1286, 1432, 1460, 1477, 1499
BstV2I GAAGAC 4 cut(s) 87, 93, 984, 1220
BstX2I RGATCY 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 417
BstZ17I GTATAC 1 cut(s) 1236
Bsu15I ATCGAT 2 cut(s) 1290, 1383
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 589, 1062, 1107
BsuTUI ATCGAT 2 cut(s) 1290, 1383
BtsCI GGATG 3 cut(s) 79, 288, 298
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 4 cut(s) 214, 667, 843, 909
BveI ACCTGC 3 cut(s) 463, 667, 752
Cac8I GCNNGC 1 cut(s) 1471
CaiI CAGNNNCTG 1 cut(s) 1277
CciI TCATGA 1 cut(s) 1405
CfoI GCGC 4 cut(s) 228, 522, 1048, 1330
Cfr13I GGNCC 3 cut(s) 475, 587, 653
ClaI ATCGAT 2 cut(s) 1290, 1383
Csp6I GTAC 1 cut(s) 1157
CspCI CAANNNNNGTGG 4 cut(s) 553, 588, 898, 933
CviAII CATG 4 cut(s) 293, 490, 1096, 1406
CviQI GTAC 1 cut(s) 1157
DdeI CTNAG 5 cut(s) 119, 936, 972, 1139, 1165
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 2 cut(s) 825, 981
EarI CTCTTC 2 cut(s) 825, 981
Eco24I GRGCYC 2 cut(s) 746, 1269
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 475, 653
Eco47III AGCGCT 1 cut(s) 1329
Eco57I CTGAAG 1 cut(s) 633
EcoNI CCTNNNNNAGG 2 cut(s) 1017, 1503
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 745, 823, 1174
EcoRV GATATC 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 746, 1269
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 4 cut(s) 296, 493, 1099, 1409
FaqI GGGAC 1 cut(s) 740
FatI CATG 4 cut(s) 292, 489, 1095, 1405
FauI CCCGC 1 cut(s) 766
FblI GTMKAC 1 cut(s) 1235
Fnu4HI GCNGC 6 cut(s) 545, 1275, 1421, 1474, 1488, 1491
FokI GGATG 3 cut(s) 86, 275, 285
FriOI GRGCYC 2 cut(s) 746, 1269
Fsp4HI GCNGC 6 cut(s) 545, 1275, 1421, 1474, 1488, 1491
FspBI CTAG 4 cut(s) 135, 1014, 1337, 1531
GlaI GCGC 4 cut(s) 227, 521, 1047, 1329
GluI GCNGC 6 cut(s) 545, 1275, 1421, 1474, 1488, 1491
GsaI CCCAGC 1 cut(s) 1449
GsuI CTGGAG 2 cut(s) 28, 287
HaeII RGCGCY 2 cut(s) 523, 1331
HaeIII GGCC 3 cut(s) 589, 1062, 1107
HapII CCGG 3 cut(s) 15, 427, 517
HhaI GCGC 4 cut(s) 228, 522, 1048, 1330
Hin1II CATG 4 cut(s) 296, 493, 1099, 1409
Hin6I GCGC 4 cut(s) 226, 520, 1046, 1328
HinP1I GCGC 4 cut(s) 226, 520, 1046, 1328
HincII GTYRAC 2 cut(s) 61, 381
HindII GTYRAC 2 cut(s) 61, 381
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 5 cut(s) 153, 457, 493, 1312, 1518
HpaII CCGG 3 cut(s) 15, 427, 517
HphI GGTGA 6 cut(s) 3, 77, 178, 691, 1181, 1408
Hpy166II GTNNAC 7 cut(s) 11, 61, 381, 448, 1236, 1282, 1311
Hpy188I TCNGA 3 cut(s) 456, 600, 613
Hpy188III TCNNGA 8 cut(s) 45, 266, 427, 974, 1316, 1388, 1406, 1515
Hpy8I GTNNAC 7 cut(s) 11, 61, 381, 448, 1236, 1282, 1311
HpyAV CCTTC 3 cut(s) 193, 1313, 1503
HpyCH4III ACNGT 4 cut(s) 27, 65, 913, 1194
HpyCH4IV ACGT 2 cut(s) 403, 683
HpyCH4V TGCA 6 cut(s) 4, 544, 564, 1082, 1487, 1493
HpyF10VI GCNNNNNNNGC 1 cut(s) 639
HpyF3I CTNAG 5 cut(s) 119, 936, 972, 1139, 1165
HpySE526I ACGT 2 cut(s) 403, 683
Hsp92II CATG 4 cut(s) 296, 493, 1099, 1409
HspAI GCGC 4 cut(s) 226, 520, 1046, 1328
Kpn2I TCCGGA 1 cut(s) 426
LmnI GCTCC 4 cut(s) 575, 1250, 1325, 1417
Lsp1109I GCAGC 6 cut(s) 556, 1286, 1432, 1460, 1477, 1499
LweI GCATC 2 cut(s) 316, 1262
MaeI CTAG 4 cut(s) 135, 1014, 1337, 1531
MaeII ACGT 2 cut(s) 403, 683
MaeIII GTNAC 7 cut(s) 27, 130, 511, 679, 841, 1297, 1453
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 746, 820, 1269
MlsI TGGCCA 1 cut(s) 1062
MluNI TGGCCA 1 cut(s) 1062
MlyI GAGTC 1 cut(s) 1306
MmeI TCCRAC 1 cut(s) 1483
Mox20I TGGCCA 1 cut(s) 1062
MroI TCCGGA 1 cut(s) 426
MscI TGGCCA 1 cut(s) 1062
MseI TTAA 3 cut(s) 93, 234, 1200
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 1062
MspA1I CMGCKG 2 cut(s) 1277, 1490
MspCI CTTAAG 1 cut(s) 1199
MspI CCGG 3 cut(s) 15, 427, 517
MspR9I CCNGG 5 cut(s) 15, 517, 747, 825, 1176
MunI CAATTG 1 cut(s) 1041
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 3 cut(s) 747, 825, 1176
MwoI GCNNNNNNNGC 1 cut(s) 639
NciI CCSGG 2 cut(s) 15, 517
NlaIII CATG 4 cut(s) 296, 493, 1099, 1409
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 5 cut(s) 27, 511, 679, 841, 1453
OliI CACNNNNGTG 1 cut(s) 191
PagI TCATGA 1 cut(s) 1405
PaqCI CACCTGC 1 cut(s) 667
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 4 cut(s) 153, 457, 493, 1518
PkrI GCNGC 6 cut(s) 546, 1276, 1422, 1475, 1489, 1492
PleI GAGTC 1 cut(s) 1306
PpsI GAGTC 1 cut(s) 1306
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 745, 823, 1174
PspFI CCCAGC 1 cut(s) 1445
PspGI CCWGG 3 cut(s) 745, 823, 1174
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 3 cut(s) 475, 587, 653
PstNI CAGNNNCTG 1 cut(s) 1277
PsuI RGATCY 1 cut(s) 417
PvuII CAGCTG 2 cut(s) 1277, 1490
RsaI GTAC 1 cut(s) 1158
RsaNI GTAC 1 cut(s) 1157
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 3 cut(s) 93, 234, 1200
SatI GCNGC 6 cut(s) 545, 1275, 1421, 1474, 1488, 1491
Sau96I GGNCC 3 cut(s) 475, 587, 653
SchI GAGTC 1 cut(s) 1306
ScrFI CCNGG 5 cut(s) 15, 517, 747, 825, 1176
SduI GDGCHC 3 cut(s) 746, 820, 1269
SfaNI GCATC 2 cut(s) 316, 1262
SinI GGWCC 2 cut(s) 475, 653
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
SsiI CCGC 1 cut(s) 759
SspI AATATT 2 cut(s) 307, 670
SspMI CTAG 4 cut(s) 135, 1014, 1337, 1531
StyD4I CCNGG 5 cut(s) 13, 515, 745, 823, 1174
TaaI ACNGT 4 cut(s) 27, 65, 913, 1194
TaiI ACGT 2 cut(s) 406, 686
TaqI TCGA 3 cut(s) 216, 1290, 1383
TatI WGTACW 1 cut(s) 1156
TfiI GAWTC 4 cut(s) 153, 457, 493, 1518
Tru1I TTAA 3 cut(s) 93, 234, 1200
Tru9I TTAA 3 cut(s) 93, 234, 1200
TscAI CASTG 4 cut(s) 214, 667, 850, 916
TseFI GTSAC 5 cut(s) 27, 511, 679, 841, 1453
TseI GCWGC 6 cut(s) 544, 1274, 1420, 1473, 1487, 1490
Tsp45I GTSAC 5 cut(s) 27, 511, 679, 841, 1453
TspDTI ATGAA 7 cut(s) 93, 145, 277, 287, 1380, 1394, 1422
TspRI CASTG 4 cut(s) 214, 667, 850, 916
Vha464I CTTAAG 1 cut(s) 1199
VpaK11BI GGWCC 2 cut(s) 475, 653
VspI ATTAAT 1 cut(s) 234
XagI CCTNNNNNAGG 2 cut(s) 1017, 1503
XapI RAATTY 4 cut(s) 167, 601, 692, 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmiI GTMKAC 1 cut(s) 1235
XspI CTAG 4 cut(s) 135, 1014, 1337, 1531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.