Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005752

Physical Location & Seq

Genomic Coordinates Forward (+)

10968938 .. 10969573

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAAAAGTTTGAGATTGGTCAGATCTGGGCATTGTATAGTGATGAGGATGGCTTGCCAAAATACTATGGCCAGATAAAGAACCTTGATTGTCACCGGTCCAAATTGCATATTGCATGGCTTGCTTCCAACTTACTACCAGACAGGGTGATTCGATGGCATGATGAGGAGATGCCTGTTTGCTGCGGGAGATTTAGGGTTAGAAGGAGTACGCTCCAGGACTATGATTCTACTCTGTCCTTTTCACACCGGGTAACTGCAATTTCTATTGGTAAGAATGATTTTGAAATATATCCTCAGAGAGGTGAGGTTTGGGCGTTGTATAAGAACTGGACAGCTGATCTCTCGTGTTCTGACTTGGATACCTGCGAGTATGACATAGTGGCAGTGTGGACAGAAAATGATATGCAAAGAGAGGTCTTGATTTTAGAGCGTGTGGATGGTTTCAACTCAGTTTTCAAGACTCGGTTGAAAGGAGGATCAGCTGAAGCCATGACCATCCGTGGGGTAGAGCTACTAAGGTTTTCTCACATGATTCCTTCTTTCAAGCTAACAAACCAAAAAGGTGGCAGCCTCAGGGGGTGCTGGGAACTTGATCCTGCTGCTTTGCCGCTTTGGTTCTTTAGCCAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006458 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019538 GO:0022607 GO:0030163 GO:0030176 GO:0030544 GO:0031072 GO:0031224 GO:0031227 GO:0031984 GO:0033554 GO:0034622 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051084 GO:0051085 GO:0051603 GO:0051716 GO:0051788 GO:0061077 GO:0065003 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071840 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

212

Amino Acids

24.48

Weight (kDa)

5.76

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	2 - 187	1.5e-58	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06340 AT3G06340 AT3G06340 AT3G06340 AT5G18750
fragaria_vesca	FvH4_2g06370
malus_domestica	MD13G1174800.v1.1 MD16G1176500.v1.1
prunus_persica	Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1
pyrus_communis	pycom13g15060 pycom13g15070 pycom16g14800 pycom16g14810
rosa_chinensis	RchiOBHm_Chr4g0420721
rosa_laevigata	RLG00000007740 RLG00000030269 RLG00000030290
rosa_multiflora	Rmu_co8498373.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363230
rosa_rugosa	Rorug04G0165700
rosa_samantha	Rh4AG227200 Rh4BG230000 Rh4CG242100 Rh4DG225500
rosa_wichuraiana	Rw4G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AciI	CCGC	2 cut(s)	186, 611
AclWI	GGATC	2 cut(s)	487, 590
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	302, 504
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	287, 448, 460, 472, 547
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	338, 485, 514, 550
AluI	AGCT	4 cut(s)	338, 485, 514, 550
AlwI	GGATC	2 cut(s)	487, 590
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	183, 570, 602
AsiGI	ACCGGT	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	86, 160, 317
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	72
BauI	CACGAG	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	170, 582, 589
BccI	CCATC	4 cut(s)	44, 150, 434, 506
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	355
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	4 cut(s)	184, 571, 603, 611
BlsI	GCNGC	4 cut(s)	185, 572, 604, 612
Bme1390I	CCNGG	2 cut(s)	218, 251
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	218, 251
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 504
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	335
Bse21I	CCTNAGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	3 cut(s)	55, 445, 498
BseLI	CCNNNNNNNGG	2 cut(s)	302, 504
BseMII	CTCAG	3 cut(s)	311, 465, 589
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	170, 582, 589
BseYI	CCCAGC	1 cut(s)	585
BshFI	GGCC	1 cut(s)	72
BshTI	ACCGGT	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	97, 250
BslI	CCNNNNNNNGG	2 cut(s)	302, 504
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	24, 340, 479, 595
BspACI	CCGC	2 cut(s)	186, 611
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	3 cut(s)	310, 464, 588
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	487, 590
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	4 cut(s)	24, 340, 479, 595
BssSI	CACGAG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	56, 123
BstDEI	CTNAG	4 cut(s)	297, 451, 518, 575
BstDSI	CCRYGG	1 cut(s)	502
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	55, 445, 498
BstKTI	GATC	4 cut(s)	27, 343, 482, 598
BstMBI	GATC	4 cut(s)	24, 340, 479, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	216, 249
BstV1I	GCAGC	3 cut(s)	170, 582, 589
BstX2I	RGATCY	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	55, 445, 498
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	56, 123
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	4 cut(s)	117, 161, 493, 532
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	4 cut(s)	297, 451, 518, 575
DpnI	GATC	4 cut(s)	26, 342, 481, 597
DpnII	GATC	4 cut(s)	24, 340, 479, 595
EaeI	YGGCCR	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	4 cut(s)	120, 164, 496, 535
FatI	CATG	4 cut(s)	116, 160, 492, 531
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	4 cut(s)	184, 571, 603, 611
FokI	GGATG	3 cut(s)	62, 452, 485
Fsp4HI	GCNGC	4 cut(s)	184, 571, 603, 611
GluI	GCNGC	4 cut(s)	184, 571, 603, 611
GsaI	CCCAGC	1 cut(s)	589
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	97, 250
Hin1II	CATG	4 cut(s)	120, 164, 496, 535
HinfI	GANTC	4 cut(s)	151, 227, 463, 535
HpaII	CCGG	2 cut(s)	97, 250
HphI	GGTGA	3 cut(s)	86, 160, 317
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	24, 300, 355
Hpy188III	TCNNGA	2 cut(s)	421, 460
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	198, 549
HpyCH4V	TGCA	4 cut(s)	109, 116, 260, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	4 cut(s)	297, 451, 518, 575
Hsp92II	CATG	4 cut(s)	120, 164, 496, 535
Kzo9I	GATC	4 cut(s)	24, 340, 479, 595
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	3 cut(s)	170, 582, 589
LweI	GCATC	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	92, 253
MalI	GATC	4 cut(s)	26, 342, 481, 597
MboI	GATC	4 cut(s)	24, 340, 479, 595
MflI	RGATCY	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	2 cut(s)	104, 261
MluNI	TGGCCA	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	40, 160, 296, 301, 306, 409, 470, 584
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	72
MspA1I	CMGCKG	2 cut(s)	338, 485
MspI	CCGG	2 cut(s)	97, 250
MspR9I	CCNGG	2 cut(s)	218, 251
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	24, 340, 479, 595
NlaIII	CATG	4 cut(s)	120, 164, 496, 535
NmuCI	GTSAC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	151, 227, 535
PfoI	TCCNGGA	1 cut(s)	216
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	185, 572, 604, 612
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	24
PvuII	CAGCTG	2 cut(s)	338, 485
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SatI	GCNGC	4 cut(s)	184, 571, 603, 611
Sau3AI	GATC	4 cut(s)	24, 340, 479, 595
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	218, 251
SfaNI	GCATC	1 cut(s)	162
SinI	GGWCC	1 cut(s)	99
Sse9I	AATT	2 cut(s)	104, 261
SsiI	CCGC	2 cut(s)	186, 611
StyD4I	CCNGG	2 cut(s)	216, 249
TaqI	TCGA	1 cut(s)	154
TasI	AATT	2 cut(s)	104, 261
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	3 cut(s)	151, 227, 535
TscAI	CASTG	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	3 cut(s)	183, 570, 602
Tsp45I	GTSAC	1 cut(s)	92
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.