Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005752

Physical Location & Seq

Genomic Coordinates Reverse (-)

58726143 .. 58727020

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGATTGCAACAAAGAAGAGGCCATTAGGGCCAAGGGGATTGCTGAGAAGAAGATGGAAAGCAAGGATTTTGCAGGGGCGCGTAAGATAGGTGTAAAGGCACAACAACTCTATCCTGATCTGGAGAACATATCTCAGATGCTTATGGTGTGTGAAGTGCATTGCTCTGCTGAACAGAAATTATTTGGGAATGAGATGGACTGGTATGACATTCTTCAGATTGATCAGAAAGCAGATGAACTGACAATTAAGAAGCAGTACAAGAACTTTAGAAGCAATGTTTCAGGCATGAATCCCCAGAACCAGCAGCCCACTTTTTGGACTATGTGCCCGTTTTGTGAGGTTAAGTACATGTATTATAAAGCAACTGCCCTGCACAAAGCTCTTACTCGTCAAAGCTGCAAGAAGCCCTTCATTGCATATGAGGCAAATGTGCAAGCATCACCAACTAGCTTCGATCAGCAGGCATACCCCCAGCAAAAATGTGGTTTCAGCAAAGTTGAAATGAAATTTCAGGGAAATTTTACTGCTGATAAACCCAAATCTGAATCTTTTAGAAAGAGCGGTCCGAAGGCAGGTGGTTCTTCTGGTATTGGTTCAGTAAAGGTGAACGGAAAGGGAGACAGAAACCATGTAGTAGAAGCCAGTGAAAGCAGTGACTCTGACAGCTGCACCGACTCTGAAGAAGATGTGGTTGTTGATACAGATGGTGTTCATCAGGGAGCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006458 GO:0006508 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019538 GO:0022607 GO:0030163 GO:0030176 GO:0030544 GO:0031072 GO:0031224 GO:0031227 GO:0031984 GO:0033554 GO:0034622 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051084 GO:0051085 GO:0051603 GO:0051716 GO:0051788 GO:0061077 GO:0065003 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071840 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

244

Amino Acids

27.12

Weight (kDa)

6.45

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06340 AT3G06340 AT3G06340 AT3G06340 AT5G18750
fragaria_vesca	FvH4_2g06370
malus_domestica	MD13G1174800.v1.1 MD16G1176500.v1.1
prunus_persica	Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1 Prupe.1G143400_v2.0.a1
pyrus_communis	pycom13g15060 pycom13g15070 pycom16g14800 pycom16g14810
rosa_chinensis	RchiOBHm_Chr4g0420721
rosa_laevigata	RLG00000007740 RLG00000030269 RLG00000030290
rosa_multiflora	Rmu_co8498373.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363230
rosa_rugosa	Rorug04G0165700
rosa_samantha	Rh4AG227200 Rh4BG230000 Rh4CG242100 Rh4DG225500
rosa_wichuraiana	Rw4G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	564
AcsI	RAATTY	2 cut(s)	509, 520
AcuI	CTGAAG	2 cut(s)	200, 702
AfaI	GTAC	2 cut(s)	260, 350
AfiI	CCNNNNNNNGG	2 cut(s)	318, 575
AflIII	ACRYGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	503
AluBI	AGCT	4 cut(s)	383, 399, 453, 669
AluI	AGCT	4 cut(s)	383, 399, 453, 669
Alw26I	GTCTC	1 cut(s)	615
AoxI	GGCC	2 cut(s)	21, 30
ApeKI	GCWGC	3 cut(s)	307, 399, 669
ApoI	RAATTY	2 cut(s)	509, 520
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	30, 566
AsuHPI	GGTGA	2 cut(s)	435, 619
AvaII	GGWCC	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	319, 386, 656
BccI	CCATC	3 cut(s)	49, 190, 701
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	2 cut(s)	450, 730
BfuAI	ACCTGC	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	308, 400, 670
BlsI	GCNGC	3 cut(s)	309, 401, 671
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	30, 566
BmsI	GCATC	2 cut(s)	129, 449
BpmI	CTGGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 575
Bse1I	ACTGG	2 cut(s)	206, 645
Bse3DI	GCAATG	3 cut(s)	160, 283, 414
BseDI	CCNNGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	318, 575
BseMI	GCAATG	3 cut(s)	160, 283, 414
BseMII	CTCAG	2 cut(s)	36, 149
BseNI	ACTGG	2 cut(s)	206, 645
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	319, 386, 656
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	2 cut(s)	359, 655
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	23, 32
BslI	CCNNNNNNNGG	2 cut(s)	318, 575
BsmAI	GTCTC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	23, 32
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	118, 223, 457
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	2 cut(s)	23, 32
BspCNI	CTCAG	2 cut(s)	37, 148
BspFNI	CGCG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	564
BsrDI	GCAATG	3 cut(s)	160, 283, 414
BsrI	ACTGG	2 cut(s)	206, 645
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	118, 223, 457
BssT1I	CCWWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	438, 465
BstDEI	CTNAG	2 cut(s)	45, 135
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	121, 226, 460
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	3 cut(s)	118, 223, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 425
BstNSI	RCATGY	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	319, 386, 656
BsuRI	GGCC	2 cut(s)	23, 32
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	652, 661
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	438, 465
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	30, 566
CpoI	CGGWCCG	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	259, 349
CspI	CGGWCCG	1 cut(s)	566
CviAII	CATG	3 cut(s)	289, 352, 632
CviJI	RGCY	9 cut(s)	23, 32, 310, 383, 399, 409, 453, 644, 669
CviKI_1	RGCY	9 cut(s)	23, 32, 310, 383, 399, 409, 453, 644, 669
CviQI	GTAC	2 cut(s)	259, 349
DdeI	CTNAG	2 cut(s)	45, 135
DpnI	GATC	3 cut(s)	120, 225, 459
DpnII	GATC	3 cut(s)	118, 223, 457
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	566
Eco57I	CTGAAG	2 cut(s)	200, 702
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	292, 355, 635
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FatI	CATG	3 cut(s)	288, 351, 631
FauNDI	CATATG	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	308, 400, 670
Fsp4HI	GCNGC	3 cut(s)	308, 400, 670
FspBI	CTAG	2 cut(s)	450, 730
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	308, 400, 670
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	23, 32
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	292, 355, 635
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	4 cut(s)	292, 548, 659, 677
HphI	GGTGA	2 cut(s)	435, 619
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	7 cut(s)	138, 219, 228, 547, 570, 664, 682
Hpy188III	TCNNGA	2 cut(s)	116, 122
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	2 cut(s)	421, 565
HpyCH4V	TGCA	8 cut(s)	9, 74, 160, 376, 402, 419, 436, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 425
HpyF3I	CTNAG	2 cut(s)	45, 135
Hsp92II	CATG	3 cut(s)	292, 355, 635
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	118, 223, 457
LmnI	GCTCC	1 cut(s)	722
Lsp1109I	GCAGC	3 cut(s)	319, 386, 656
LweI	GCATC	2 cut(s)	129, 449
MaeI	CTAG	2 cut(s)	450, 730
MaeIII	GTNAC	1 cut(s)	656
MalI	GATC	3 cut(s)	120, 225, 459
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	3 cut(s)	118, 223, 457
MboII	GAAGA	7 cut(s)	29, 61, 64, 206, 576, 695, 698
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	4 cut(s)	179, 246, 509, 520
MlyI	GAGTC	2 cut(s)	653, 671
MnlI	CCTC	3 cut(s)	13, 334, 418
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	2 cut(s)	249, 345
MspA1I	CMGCKG	1 cut(s)	669
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	29, 425
NdeI	CATATG	1 cut(s)	421
NdeII	GATC	3 cut(s)	118, 223, 457
NlaIII	CATG	3 cut(s)	292, 355, 635
NmuCI	GTSAC	1 cut(s)	656
NspI	RCATGY	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	566
PciI	ACATGT	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	292, 548
PflMI	CCANNNNNTGG	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	309, 401, 671
PleI	GAGTC	2 cut(s)	653, 671
PpsI	GAGTC	2 cut(s)	653, 671
PscI	ACATGT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	474
PspPI	GGNCC	2 cut(s)	30, 566
PvuII	CAGCTG	1 cut(s)	669
RsaI	GTAC	2 cut(s)	260, 350
RsaNI	GTAC	2 cut(s)	259, 349
Rsr2I	CGGWCCG	1 cut(s)	566
RsrII	CGGWCCG	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	249, 345
SatI	GCNGC	3 cut(s)	308, 400, 670
Sau3AI	GATC	3 cut(s)	118, 223, 457
Sau96I	GGNCC	2 cut(s)	30, 566
SchI	GAGTC	2 cut(s)	653, 671
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	9 cut(s)	94, 345, 385, 401, 455, 580, 609, 671, 731
SfaNI	GCATC	2 cut(s)	129, 449
SfiI	GGCCNNNNNGGCC	1 cut(s)	29
SinI	GGWCC	1 cut(s)	566
Sse9I	AATT	4 cut(s)	179, 246, 509, 520
SsiI	CCGC	1 cut(s)	564
SspMI	CTAG	2 cut(s)	450, 730
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	179, 246, 509, 520
TatI	WGTACW	2 cut(s)	258, 348
TfiI	GAWTC	2 cut(s)	292, 548
Tru1I	TTAA	2 cut(s)	249, 345
Tru9I	TTAA	2 cut(s)	249, 345
TscAI	CASTG	2 cut(s)	652, 661
TseFI	GTSAC	1 cut(s)	656
TseI	GCWGC	3 cut(s)	307, 399, 669
Tsp45I	GTSAC	1 cut(s)	656
TspDTI	ATGAA	5 cut(s)	252, 305, 403, 521, 704
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	2 cut(s)	652, 661
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	2 cut(s)	509, 520
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	2 cut(s)	450, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.