Rmu_co8498373.1_g000001

Domain of unknown function (DUF3444)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8498373.1
Physical Location & Seq
Forward (+)
1 .. 2021
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8498373.1_g000001.1.cds

Sequence Viewer

Length: 2021 bp
gagacagaaagcgtgcagtagaagccagtgaaagcagtgactctgaaagcggcgccgactctgaagaagatgtggtcgttgatatggatggtgttcatcagggatattacggggatcaacctaggagatctgcacggagtaagcagcaggtatcttataaggaaaatctaagtgatgatgatgacattcctatatcaaaaagggggaagaggagtggatcctcatgtgccactgaagaacagaatgaagatgcttctaaagaggaggaatctaaaatgaatggccaatctgaggctaacaccaaaggagatgagaaaaaggtgcaacagaaagatagtgctggtcttgaagagtcatcgaaggttcaggccaaaaagatggtgaatggtgagaaaagttcagaaagtaaagagaaagttcatgagaattctgcatcagatacaagctcccatgagaaaattgcagagccactgtattctgttccccaaaatgacttcaatgactttgacaagatccggacggaagaatgttttaaagttgggcagctctgggctgtttatgataatcaaaatgggatgccaagattttacgctaggattaagaaacttaacgctcccgagttcaaggtgcatataacctggctggaggcggaccctgatgatggtaatgggaaaaaatgggcaaatgcaaacttgccaatttcttgtggtaaattcacacaaggccagtctgacaccacagaagatattgggatattctctcatttgatatcttgggagaagattaaaaatacttacaagatatatccaagaaagggagagacttgggccatttttaaggactggaatgtgaactggtgctctgatctggactccaattgtaagcgtgagtttgaatatgagtacgttgaaattttgtcagagtatgctgagggtgttggaatacgtgttgcactcttggagaaggtgaatggctttgtgagtgttttttgtcaaatggtggaagaaggaaaaggcacgtttcaagttccaccaggtgaattattgaggttctctcacaggcttccatcctttaaattgactggtgatgaaggagtaggagtgccatcaggatctgttgagcttgatcccgcctctatgctctttagtgctgaggaaattgaagcaagagacaagaaaagtagtaccagtgagttattttctagatggtcagatataaggaaacctatgatggggaatgtagctacacaccagggcgatccgaagatcataaatttggggcctgaacataataaacctaatcaagatcatgatgctcatgaagaagtgtcaattgaagttccagaccctgaattttacaactttgatgctgataaatccctgcaaaaatttcagattggtcagatctgggcattgtacagtgatgaagatggcttgcccaaatactatggacagatcaaaaggattgattctaggaaatctaaattgaagattttggttgcatggcttgaatgcagctcactaccagaaaattcgatggagtggcgtgatgaagagatgcctatttcttgtgggaaatttgaggttaaaaggaatcaagtccaagattatgattctaccatgtccttttcacatctagtcaaagcggttcctgttagtagaactgaatttgatatcttgcccaagagtggggaggtttgggcattatataagaactggactcctgatatctcgacttctggcttggcaacctgtgactatgatatagtcgaagtgtgtgaggacaatggtttgcaaagaaaggtactgattttaaggcgtgtggatggcttcaactcagtttttaaagttgaagttaaaggaggatcagctgaaactatgactatccccaaggttgagcttctcaggttttctcatagcattccttctttccggctaacagaagagaaaggtggcagccttagaggctgctgggaacttgatcctgctgctttacctgtccgatactttagtcagaagtga

Protein Analysis

672

Amino Acids

75.99

Weight (kDa)

5.04

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 52
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 4 cut(s) 50, 649, 1130, 1645
AclWI GGATC 9 cut(s) 122, 212, 225, 507, 1119, 1120, 1252, 1872, 1975
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 9 cut(s) 426, 712, 911, 1272, 1351, 1387, 1530, 1576, 1666
AcuI CTGAAG 2 cut(s) 83, 254
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 1036
AfaI GTAC 4 cut(s) 904, 1185, 1417, 1805
AfiI CCNNNNNNNGG 6 cut(s) 291, 661, 814, 1231, 1687, 1688
AflIII ACRYGT 1 cut(s) 945
AjnI CCWGG 3 cut(s) 637, 1032, 1250
AluBI AGCT 7 cut(s) 446, 546, 1122, 1243, 1517, 1870, 1899
AluI AGCT 7 cut(s) 446, 546, 1122, 1243, 1517, 1870, 1899
Alw21I GWGCWC 1 cut(s) 862
Alw26I GTCTC 2 cut(s) 814, 1163
AlwI GGATC 9 cut(s) 122, 212, 225, 507, 1119, 1120, 1252, 1872, 1975
AlwNI CAGNNNCTG 2 cut(s) 1114, 1348
Ama87I CYCGRG 1 cut(s) 616
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 5 cut(s) 282, 368, 723, 827, 1279
ApeKI GCWGC 6 cut(s) 144, 543, 1514, 1955, 1967, 1987
ApoI RAATTY 9 cut(s) 426, 712, 911, 1272, 1351, 1387, 1530, 1576, 1666
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 651, 827, 1279
AsuHPI GGTGA 5 cut(s) 393, 400, 978, 1048, 1096
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 1 cut(s) 651
AvrII CCTAGG 1 cut(s) 121
BaeI ACNNNNGTAYC 1 cut(s) 1995
BalI TGGCCA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 862
BbvCI CCTCAGC 2 cut(s) 929, 1151
BbvI GCAGC 6 cut(s) 156, 555, 1526, 1954, 1967, 1974
BciT130I CCWGG 3 cut(s) 639, 1034, 1252
BcoDI GTCTC 2 cut(s) 814, 1163
BfaI CTAG 5 cut(s) 122, 593, 1202, 1472, 1636
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 1964
BglII AGATCT 2 cut(s) 127, 1403
BisI GCNGC 7 cut(s) 51, 145, 544, 1515, 1956, 1968, 1988
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 7 cut(s) 52, 146, 545, 1516, 1957, 1969, 1989
Bme1390I CCNGG 3 cut(s) 639, 1034, 1252
Bme18I GGWCC 1 cut(s) 651
BmeT110I CYCGRG 1 cut(s) 616
BmgT120I GGNCC 3 cut(s) 651, 827, 1279
BmiI GGNNCC 5 cut(s) 54, 219, 653, 1280, 1649
BmrFI CCNGG 3 cut(s) 639, 1034, 1252
BmsI GCATC 6 cut(s) 240, 442, 566, 1302, 1356, 1547
BplI GAGNNNNNCTC 2 cut(s) 1038, 1070
BpmI CTGGAG 1 cut(s) 664
Bpu10I CCTNAGC 2 cut(s) 929, 1151
BsaAI YACGTR 1 cut(s) 946
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 121, 1251, 1889
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 1085, 1115
Bsc4I CCNNNNNNNGG 6 cut(s) 291, 661, 814, 1231, 1687, 1688
Bse1I ACTGG 7 cut(s) 26, 726, 847, 859, 1086, 1187, 1720
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 3 cut(s) 639, 1034, 1252
BseDI CCNNGG 3 cut(s) 121, 1251, 1889
BseGI GGATG 4 cut(s) 93, 581, 1066, 1830
BseLI CCNNNNNNNGG 6 cut(s) 291, 661, 814, 1231, 1687, 1688
BseMII CTCAG 5 cut(s) 281, 920, 1142, 1850, 1917
BseNI ACTGG 7 cut(s) 26, 726, 847, 859, 1086, 1187, 1720
BseRI GAGGAG 2 cut(s) 225, 277
BseXI GCAGC 6 cut(s) 156, 555, 1526, 1954, 1967, 1974
BseYI CCCAGC 1 cut(s) 1970
BsgI GTGCAG 2 cut(s) 35, 116
BshFI GGCC 5 cut(s) 284, 370, 725, 829, 1281
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 2 cut(s) 516, 1932
BslI CCNNNNNNNGG 6 cut(s) 291, 661, 814, 1231, 1687, 1688
BsmAI GTCTC 2 cut(s) 814, 1163
BsmI GAATGC 2 cut(s) 1516, 1919
BsnI GGCC 5 cut(s) 284, 370, 725, 829, 1281
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 862
Bsp13I TCCGGA 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 1415
BspACI CCGC 4 cut(s) 50, 649, 1130, 1645
BspANI GGCC 5 cut(s) 284, 370, 725, 829, 1281
BspCNI CTCAG 5 cut(s) 282, 921, 1143, 1849, 1916
BspEI TCCGGA 1 cut(s) 515
BspHI TCATGA 3 cut(s) 420, 1308, 1317
BspLI GGNNCC 5 cut(s) 54, 219, 653, 1280, 1649
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 9 cut(s) 122, 212, 225, 507, 1119, 1120, 1252, 1872, 1975
BspT107I GGYRCC 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 1415
BsrI ACTGG 7 cut(s) 26, 726, 847, 859, 1086, 1187, 1720
BssECI CCNNGG 3 cut(s) 121, 1251, 1889
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 121, 1889
Bst2UI CCWGG 3 cut(s) 639, 1034, 1252
Bst4CI ACNGT 2 cut(s) 473, 1420
Bst6I CTCTTC 4 cut(s) 202, 344, 1547, 1937
BstACI GRCGYC 1 cut(s) 53
BstAUI TGTACA 1 cut(s) 1415
BstBAI YACGTR 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 14, 1435
BstDEI CTNAG 7 cut(s) 169, 290, 929, 1151, 1836, 1903, 1960
BstF5I GGATG 4 cut(s) 93, 581, 1066, 1830
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 814, 1163
BstMWI GCNNNNNNNGC 2 cut(s) 22, 1964
BstNI CCWGG 3 cut(s) 639, 1034, 1252
BstSCI CCNGG 3 cut(s) 637, 1032, 1250
BstV1I GCAGC 6 cut(s) 156, 555, 1526, 1954, 1967, 1974
BstX2I RGATCY 5 cut(s) 127, 217, 512, 1111, 1403
BstXI CCANNNNNNTGG 1 cut(s) 378
BstYI RGATCY 5 cut(s) 127, 217, 512, 1111, 1403
BsuRI GGCC 5 cut(s) 284, 370, 725, 829, 1281
BtsCI GGATG 4 cut(s) 93, 581, 1066, 1830
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 6 cut(s) 33, 42, 230, 469, 1194, 1425
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 14, 1435
CaiI CAGNNNCTG 2 cut(s) 1114, 1348
CciI TCATGA 3 cut(s) 420, 1308, 1317
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 651, 827, 1279
CsiI ACCWGGT 1 cut(s) 1032
Csp6I GTAC 4 cut(s) 903, 1184, 1416, 1804
CviAII CATG 7 cut(s) 224, 421, 451, 1309, 1318, 1502, 1620
CviQI GTAC 4 cut(s) 903, 1184, 1416, 1804
DdeI CTNAG 7 cut(s) 169, 290, 929, 1151, 1836, 1903, 1960
DinI GGCGCC 1 cut(s) 54
DraI TTTAAA 3 cut(s) 534, 1074, 1845
DraIII CACNNNGTG 1 cut(s) 1036
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 4 cut(s) 202, 344, 1547, 1937
EarI CTCTTC 4 cut(s) 202, 344, 1547, 1937
EciI GGCGGA 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 121, 1889
Eco32I GATATC 3 cut(s) 770, 1674, 1728
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 83, 254
Eco88I CYCGRG 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 1279
EcoRI GAATTC 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 637, 1032, 1250
EcoRV GATATC 3 cut(s) 770, 1674, 1728
EcoT14I CCWWGG 2 cut(s) 121, 1889
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 121, 1889
FaeI CATG 7 cut(s) 227, 424, 454, 1312, 1321, 1505, 1623
FatI CATG 7 cut(s) 223, 420, 450, 1308, 1317, 1501, 1619
FauI CCCGC 1 cut(s) 1137
Fnu4HI GCNGC 7 cut(s) 51, 145, 544, 1515, 1956, 1968, 1988
FokI GGATG 4 cut(s) 100, 588, 1053, 1837
Fsp4HI GCNGC 7 cut(s) 51, 145, 544, 1515, 1956, 1968, 1988
FspBI CTAG 5 cut(s) 122, 593, 1202, 1472, 1636
GlaI GCGC 1 cut(s) 54
GluI GCNGC 7 cut(s) 51, 145, 544, 1515, 1956, 1968, 1988
GsaI CCCAGC 1 cut(s) 1974
GsuI CTGGAG 1 cut(s) 664
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 5 cut(s) 284, 370, 725, 829, 1281
HapII CCGG 2 cut(s) 516, 1932
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 7 cut(s) 227, 424, 454, 1312, 1321, 1505, 1623
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 9 cut(s) 40, 58, 268, 352, 871, 1468, 1593, 1612, 1719
HpaII CCGG 2 cut(s) 516, 1932
HphI GGTGA 5 cut(s) 393, 400, 978, 1048, 1096
Hpy166II GTNNAC 1 cut(s) 852
Hpy8I GTNNAC 1 cut(s) 852
HpyAV CCTTC 5 cut(s) 354, 957, 1000, 1084, 1934
HpyCH4III ACNGT 2 cut(s) 473, 1420
HpyCH4IV ACGT 3 cut(s) 905, 945, 1018
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 1964
HpyF3I CTNAG 7 cut(s) 169, 290, 929, 1151, 1836, 1903, 1960
HpySE526I ACGT 3 cut(s) 905, 945, 1018
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 7 cut(s) 227, 424, 454, 1312, 1321, 1505, 1623
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 515
LmnI GCTCC 2 cut(s) 451, 618
Lsp1109I GCAGC 6 cut(s) 156, 555, 1526, 1954, 1967, 1974
LweI GCATC 6 cut(s) 240, 442, 566, 1302, 1356, 1547
MabI ACCWGGT 1 cut(s) 1032
MaeI CTAG 5 cut(s) 122, 593, 1202, 1472, 1636
MaeII ACGT 3 cut(s) 905, 945, 1018
MaeIII GTNAC 2 cut(s) 37, 1753
MfeI CAATTG 2 cut(s) 876, 1331
MflI RGATCY 5 cut(s) 127, 217, 512, 1111, 1403
MhlI GDGCHC 1 cut(s) 862
MlsI TGGCCA 1 cut(s) 284
MluNI TGGCCA 1 cut(s) 284
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 5 cut(s) 34, 52, 361, 865, 1713
MmeI TCCRAC 1 cut(s) 918
Mox20I TGGCCA 1 cut(s) 284
MroI TCCGGA 1 cut(s) 515
MscI TGGCCA 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 1870
MspI CCGG 2 cut(s) 516, 1932
MspR9I CCNGG 3 cut(s) 639, 1034, 1252
MunI CAATTG 2 cut(s) 876, 1331
Mva1269I GAATGC 2 cut(s) 1516, 1919
MvaI CCWGG 3 cut(s) 639, 1034, 1252
MwoI GCNNNNNNNGC 2 cut(s) 22, 1964
NarI GGCGCC 1 cut(s) 53
NlaIII CATG 7 cut(s) 227, 424, 454, 1312, 1321, 1505, 1623
NlaIV GGNNCC 5 cut(s) 54, 219, 653, 1280, 1649
NmuCI GTSAC 2 cut(s) 37, 1753
PagI TCATGA 3 cut(s) 420, 1308, 1317
PctI GAATGC 2 cut(s) 1516, 1919
PfeI GAWTC 4 cut(s) 268, 1468, 1593, 1612
PkrI GCNGC 7 cut(s) 52, 146, 545, 1516, 1957, 1969, 1989
PleI GAGTC 5 cut(s) 34, 52, 360, 865, 1713
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 5 cut(s) 34, 52, 360, 865, 1713
Ppu21I YACGTR 1 cut(s) 946
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 637, 1032, 1250
PspFI CCCAGC 1 cut(s) 1970
PspGI CCWGG 3 cut(s) 637, 1032, 1250
PspN4I GGNNCC 5 cut(s) 54, 219, 653, 1280, 1649
PspPI GGNCC 3 cut(s) 651, 827, 1279
PstNI CAGNNNCTG 2 cut(s) 1114, 1348
PsuI RGATCY 5 cut(s) 127, 217, 512, 1111, 1403
PvuII CAGCTG 1 cut(s) 1870
RsaI GTAC 4 cut(s) 904, 1185, 1417, 1805
RsaNI GTAC 4 cut(s) 903, 1184, 1416, 1804
SatI GCNGC 7 cut(s) 51, 145, 544, 1515, 1956, 1968, 1988
Sau96I GGNCC 3 cut(s) 651, 827, 1279
SchI GAGTC 5 cut(s) 34, 52, 361, 865, 1713
ScrFI CCNGG 3 cut(s) 639, 1034, 1252
SduI GDGCHC 1 cut(s) 862
SexAI ACCWGGT 1 cut(s) 1032
SfaNI GCATC 6 cut(s) 240, 442, 566, 1302, 1356, 1547
SfoI GGCGCC 1 cut(s) 54
SinI GGWCC 1 cut(s) 651
SsiI CCGC 4 cut(s) 50, 649, 1130, 1645
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 5 cut(s) 122, 593, 1202, 1472, 1636
StyD4I CCNGG 3 cut(s) 637, 1032, 1250
StyI CCWWGG 2 cut(s) 121, 1889
TaaI ACNGT 2 cut(s) 473, 1420
TaiI ACGT 3 cut(s) 908, 948, 1021
TaqI TCGA 4 cut(s) 358, 1534, 1732, 1769
TatI WGTACW 1 cut(s) 1415
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 4 cut(s) 268, 1468, 1593, 1612
TscAI CASTG 6 cut(s) 33, 42, 237, 476, 1194, 1425
TseFI GTSAC 2 cut(s) 37, 1753
TseI GCWGC 6 cut(s) 144, 543, 1514, 1955, 1967, 1987
Tsp45I GTSAC 2 cut(s) 37, 1753
TspDTI ATGAA 8 cut(s) 85, 260, 292, 409, 1103, 1334, 1439, 1565
TspGWI ACGGA 2 cut(s) 150, 535
TspRI CASTG 6 cut(s) 33, 42, 237, 476, 1194, 1425
VpaK11BI GGWCC 1 cut(s) 651
XapI RAATTY 9 cut(s) 426, 712, 911, 1272, 1351, 1387, 1530, 1576, 1666
XbaI TCTAGA 1 cut(s) 1201
XmaJI CCTAGG 1 cut(s) 121
XspI CTAG 5 cut(s) 122, 593, 1202, 1472, 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.