pycom13g15560

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014400
Physical Location & Seq
Reverse (-)
11335467 .. 11336953
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGGCTAATGGAGGGGCAAAATCTGCAGCATCAATTCTCCTAATTGTTAATCTTGTTCTGTATTTCGTTGTGATTGTCATTGCTTCTTGGGCTGTCAGCCATGGAATCCAAAGGTCTCGCGAAACCGCATCTGTTTTGTCGATTCCTGCTCGGATATTTCCAATATATTTTACATTTGGGAATACGGCAACTGGGTTCTTTGTGATCTTCTCCCTCATTGCTGGAGTTGTTGGATTTGGGACCTCACTCACTGGACTCCACAACGTTGTCCAATGGGACGGCCCCAGCTTGCACACAGCTGCTGCTGCTTCTCTTGCTACTTGTTCACTCAGCCTTCTTGCCATGGGATTGGCATGTAAAGAGATTGATCTTGGTTGGACAGATTCCAACTTGCGTACGTTGGAGACAATAACAATCCTTGTAACTGCAACGCAGTTGTTTTCGACGTGTGTCATCCATGTTGGGGTTGAAGATGTTATTGCTCAAGAAAGGAGCCGCACTGGAAGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

171

Amino Acids

17.97

Weight (kDa)

6.89

Isoelectric Point (pI)

25.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 155 1.3e-52 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014400)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18970
fragaria_vesca FvH4_4g14182
malus_domestica MD13G1180300.v1.1 MD16G1181200.v1.1
prunus_persica Prupe.1G148600_v2.0.a1
pyrus_communis pycom13g15560 pycom16g15200
rosa_chinensis RchiOBHm_Chr4g0419021
rosa_laevigata RLG00000007832
rosa_multiflora Rmu_co8230677.1_g000001 Rmu_sc0005646.1_g000002
rosa_roxburghii Rroxscaffold_5G00362080
rosa_rugosa Rorug04G0156500
rosa_samantha Rh4AG218000 Rh4BG212200 Rh4DG216600
rosa_wichuraiana Rw4G018640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 126, 496
AclI AACGTT 1 cut(s) 264
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 1 cut(s) 470
AjiI CACGTC 1 cut(s) 447
AluBI AGCT 2 cut(s) 288, 299
AluI AGCT 2 cut(s) 288, 299
Alw26I GTCTC 2 cut(s) 120, 398
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 4 cut(s) 26, 299, 302, 305
AspS9I GGNCC 2 cut(s) 240, 281
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 4 cut(s) 38, 286, 289, 292
BceAI ACGGC 2 cut(s) 201, 295
BcoDI GTCTC 2 cut(s) 120, 398
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 5 cut(s) 27, 300, 303, 306, 496
BlsI GCNGC 5 cut(s) 28, 301, 304, 307, 497
Bme18I GGWCC 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 240, 281
BmiI GGNNCC 3 cut(s) 241, 283, 494
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 38, 137
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 100, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 3 cut(s) 196, 256, 505
Bse3DI GCAATG 2 cut(s) 78, 216
BseDI CCNNGG 2 cut(s) 100, 342
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 2 cut(s) 78, 216
BseMII CTCAG 1 cut(s) 343
BseNI ACTGG 3 cut(s) 196, 256, 505
BseXI GCAGC 4 cut(s) 38, 286, 289, 292
BseYI CCCAGC 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 282
BsiWI CGTACG 1 cut(s) 395
BslFI GGGAC 2 cut(s) 253, 290
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 2 cut(s) 120, 398
BsmFI GGGAC 2 cut(s) 253, 290
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 204, 367
Bsp19I CCATGG 2 cut(s) 100, 342
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 126, 496
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 342
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 241, 283, 494
BspMAI CTGCAG 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 78, 216
BsrI ACTGG 3 cut(s) 196, 256, 505
BssECI CCNNGG 2 cut(s) 100, 342
BssMI GATC 2 cut(s) 204, 367
BssT1I CCWWGG 2 cut(s) 100, 342
Bst6I CTCTTC 1 cut(s) 499
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 2 cut(s) 100, 342
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 2 cut(s) 207, 370
BstMAI GTCTC 2 cut(s) 120, 398
BstMBI GATC 2 cut(s) 204, 367
BstMWI GCNNNNNNNGC 4 cut(s) 23, 89, 305, 314
BstNSI RCATGY 1 cut(s) 357
BstPAI GACNNNNGTC 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 38, 286, 289, 292
BstXI CCANNNNNNTGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 2 cut(s) 100, 342
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 249, 498
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 240, 281
Csp6I GTAC 1 cut(s) 396
CviAII CATG 4 cut(s) 101, 343, 354, 458
CviJI RGCY 8 cut(s) 5, 92, 99, 282, 288, 299, 333, 495
CviKI_1 RGCY 8 cut(s) 5, 92, 99, 282, 288, 299, 333, 495
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 329
DpnI GATC 2 cut(s) 206, 369
DpnII GATC 2 cut(s) 204, 367
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco130I CCWWGG 2 cut(s) 100, 342
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 100, 342
ErhI CCWWGG 2 cut(s) 100, 342
FaeI CATG 4 cut(s) 104, 346, 357, 461
FaiI YATR 5 cut(s) 102, 166, 344, 355, 459
FaqI GGGAC 2 cut(s) 253, 290
FatI CATG 4 cut(s) 100, 342, 353, 457
Fnu4HI GCNGC 5 cut(s) 27, 300, 303, 306, 496
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 5 cut(s) 27, 300, 303, 306, 496
GluI GCNGC 5 cut(s) 27, 300, 303, 306, 496
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 4 cut(s) 104, 346, 357, 461
HinfI GANTC 4 cut(s) 105, 142, 255, 383
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 119, 485
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 344
HpyCH4IV ACGT 3 cut(s) 264, 398, 446
HpyCH4V TGCA 3 cut(s) 26, 292, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 89, 305, 314
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 3 cut(s) 264, 398, 446
Hsp92II CATG 4 cut(s) 104, 346, 357, 461
Kzo9I GATC 2 cut(s) 204, 367
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 6 cut(s) 159, 177, 207, 237, 298, 486
Lsp1109I GCAGC 4 cut(s) 38, 286, 289, 292
LweI GCATC 2 cut(s) 38, 137
MaeII ACGT 3 cut(s) 264, 398, 446
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 206, 369
MboI GATC 2 cut(s) 204, 367
MboII GAAGA 2 cut(s) 199, 482
MluCI AATT 2 cut(s) 33, 42
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 4 cut(s) 211, 356, 381, 411
MnlI CCTC 3 cut(s) 5, 224, 253
MseI TTAA 2 cut(s) 48, 511
MspA1I CMGCKG 1 cut(s) 299
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 23, 89, 305, 314
NcoI CCATGG 2 cut(s) 100, 342
NdeII GATC 2 cut(s) 204, 367
NlaIII CATG 4 cut(s) 104, 346, 357, 461
NlaIV GGNNCC 3 cut(s) 241, 283, 494
NruI TCGCGA 1 cut(s) 120
NspI RCATGY 1 cut(s) 357
PfeI GAWTC 3 cut(s) 105, 142, 383
Pfl23II CGTACG 1 cut(s) 395
PkrI GCNGC 5 cut(s) 28, 301, 304, 307, 497
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 240
PshAI GACNNNNGTC 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 264
Psp5II RGGWCCY 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 284
PspLI CGTACG 1 cut(s) 395
PspN4I GGNNCC 3 cut(s) 241, 283, 494
PspPI GGNCC 2 cut(s) 240, 281
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 299
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SaqAI TTAA 2 cut(s) 48, 511
SatI GCNGC 5 cut(s) 27, 300, 303, 306, 496
Sau3AI GATC 2 cut(s) 204, 367
Sau96I GGNCC 2 cut(s) 240, 281
SchI GAGTC 1 cut(s) 249
SetI ASST 7 cut(s) 116, 245, 267, 290, 301, 401, 449
SfaNI GCATC 2 cut(s) 38, 137
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 2 cut(s) 33, 42
SsiI CCGC 2 cut(s) 126, 496
StyI CCWWGG 2 cut(s) 100, 342
TaiI ACGT 3 cut(s) 267, 401, 449
TaqI TCGA 2 cut(s) 140, 443
TasI AATT 2 cut(s) 33, 42
TauI GCSGC 1 cut(s) 498
TfiI GAWTC 3 cut(s) 105, 142, 383
Tru1I TTAA 2 cut(s) 48, 511
Tru9I TTAA 2 cut(s) 48, 511
TscAI CASTG 2 cut(s) 256, 505
TseI GCWGC 4 cut(s) 26, 299, 302, 305
TspRI CASTG 2 cut(s) 256, 505
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.