pycom13g16150

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014046
Physical Location & Seq
Reverse (-)
11894102 .. 11895157
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGCGACAATCGTGTGCCAAGGTCTGCAGTCATGCCTGGAGTCTCCTCACCTTGTGGAGCCAAGAACCCTAAGGCTAAAGCTTTCTGCACCGGTAGCTCATCACTTTTCTTCAATTACCCCCCAAGAATTAGGAATCAAAGCTTGTTTCTCTGAAGAGAAATGCAATAATTATGAGGAAATCAACAGCAATAAGGCCACCTCCTGGAGTTTCCTCCAAGCTATCTCCAAACCCTCACTAGAAAACCCTACTGCTGAGGTGGACAAAGAAAATACTTACACCCCTCCTAGGGTTTATAGGAGCTCATCAGTTACTAAGCTAAATGAGAAGAGCTTGGAGTTGTGCACTGAAGACTTGGGCTGCGAGACCGGCGCCATTATCACAGAAAGCTTCAGCATTTTCTCACCAATGTCTGAATCAGAATCGAATGCAGCGCCAAGGGAGCATCAAAATAAGCATAAATTTTCGGGTGCAAAGAAGGTGAATAATGTTCACAATTTTCCACCTCCATTGACAACAATAAGCGGCGAGGATTCTCTACACTTTAGGCCTCACAGGGAAGATGGGAGGCTGATCATCAAAGCTGTCAAGGCCCCTTTAAGTCATTCATGCTTCCAAGCTGAAAGAAGCAATGGCCGCCTTCGATTGTGCTTTTCAAACACCTTTACTCCCAGTTTTGACTCAGAAGAAGAAGCAGCAGCCATTCAAGAATACAATGAAGGGTGTGAAAATGACATAACTGAGGAGGAAGCAGAAGAGCAAGATCAAGAAGTGGTGGGAGAAAATACAGAAGAAGAATTGGTAGAACAATTAGGAGGCGATAAGGAGGATGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGGAGGCGGAGGGAAGAGATCAAATGTGTGTTTGATGGAGGGTGAGGAGGTCGATGGGAATAGTTTGAATGCTAGGGGTGAAGAGGGAATAGAAAAGTTTGAAAGGCCAAGCAGGTGCAAAGAAGGTGGCGGTGAGTGTGAGAAGAAAGGATTGTTAAAGTATTGGGAGCCCTTTTGGGTGGCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

352

Amino Acids

39.2

Weight (kDa)

4.62

Isoelectric Point (pI)

69.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 166 - 218 1.3e-22 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06020 AT5G19260
fragaria_vesca FvH4_4g14940
malus_domestica MD13G1186600.v1.1 MD16G1187300.v1.1
prunus_persica Prupe.1G154300_v2.0.a1
pyrus_communis pycom13g16150
rosa_chinensis RchiOBHm_Chr4g0417161
rosa_laevigata RLG00000007925
rosa_multiflora Rmu_sc0000646.1_g000019
rosa_roxburghii Rroxscaffold_5G00360980
rosa_rugosa Rorug04G0146200
rosa_samantha Rh4AG209100 Rh4BG206000 Rh4CG220100 Rh4DG206800
rosa_wichuraiana Rw4G017710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 969
Acc36I ACCTGC 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 204
AciI CCGC 4 cut(s) 525, 637, 873, 996
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 3 cut(s) 174, 369, 376
AcyI GRCGYC 1 cut(s) 372
AdeI CACNNNGTG 1 cut(s) 55
AfiI CCNNNNNNNGG 3 cut(s) 204, 288, 289
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 114, 657, 707, 934, 968
AjnI CCWGG 2 cut(s) 36, 203
Alw21I GWGCWC 2 cut(s) 305, 347
Alw26I GTCTC 2 cut(s) 48, 359
Alw44I GTGCAC 1 cut(s) 343
AoxI GGCC 5 cut(s) 195, 548, 591, 634, 971
ApaLI GTGCAC 1 cut(s) 343
ApeKI GCWGC 4 cut(s) 360, 431, 695, 698
ApoI RAATTY 1 cut(s) 461
AsiGI ACCGGT 1 cut(s) 91
AspA2I CCTAGG 1 cut(s) 287
AspLEI GCGC 2 cut(s) 374, 436
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 6 cut(s) 41, 396, 493, 920, 956, 1010
AvrII CCTAGG 1 cut(s) 287
AxyI CCTNAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 347
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 305, 1038
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 305, 347
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 347, 443, 707, 710
BccI CCATC 3 cut(s) 557, 895, 914
BciT130I CCWGG 2 cut(s) 38, 205
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 48, 359
BfaI CTAG 3 cut(s) 239, 288, 939
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 2 cut(s) 375, 437
BfuAI ACCTGC 1 cut(s) 969
BisI GCNGC 6 cut(s) 361, 432, 526, 637, 696, 699
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 6 cut(s) 362, 433, 527, 638, 697, 700
Bme1390I CCNGG 2 cut(s) 38, 205
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 4 cut(s) 60, 373, 594, 1035
BmrFI CCNGG 2 cut(s) 38, 205
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 2 cut(s) 59, 226
Bpu10I CCTNAGC 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 19, 287, 437
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 288, 289
Bse118I RCCGGY 2 cut(s) 91, 368
Bse1I ACTGG 1 cut(s) 672
Bse21I CCTNAGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 637
BseBI CCWGG 2 cut(s) 38, 205
BseDI CCNNGG 3 cut(s) 19, 287, 437
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 3 cut(s) 204, 288, 289
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 3 cut(s) 246, 696, 732
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 6 cut(s) 36, 758, 848, 851, 854, 926
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 4 cut(s) 347, 443, 707, 710
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 5 cut(s) 197, 550, 593, 636, 973
BshNI GGYRCC 1 cut(s) 371
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 305, 347
BsiSI CCGG 2 cut(s) 92, 369
BslI CCNNNNNNNGG 3 cut(s) 204, 288, 289
BsmAI GTCTC 2 cut(s) 48, 359
BsmI GAATGC 2 cut(s) 433, 940
BsnI GGCC 5 cut(s) 197, 550, 593, 636, 973
Bso31I GGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 305, 347, 1038
Bsp143I GATC 3 cut(s) 573, 763, 884
BspACI CCGC 4 cut(s) 525, 637, 873, 996
BspANI GGCC 5 cut(s) 197, 550, 593, 636, 973
BspCNI CTCAG 3 cut(s) 247, 695, 733
BspLI GGNNCC 4 cut(s) 60, 373, 594, 1035
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 969
BspQI GCTCTTC 2 cut(s) 323, 750
BspT107I GGYRCC 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 637
BsrFI RCCGGY 2 cut(s) 91, 368
BsrI ACTGG 1 cut(s) 672
BssAI RCCGGY 2 cut(s) 91, 368
BssECI CCNNGG 3 cut(s) 19, 287, 437
BssMI GATC 3 cut(s) 573, 763, 884
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 19, 287, 437
Bst2UI CCWGG 2 cut(s) 38, 205
Bst6I CTCTTC 5 cut(s) 150, 323, 750, 875, 942
BstACI GRCGYC 1 cut(s) 372
BstDEI CTNAG 5 cut(s) 71, 255, 315, 682, 741
BstF5I GGATG 1 cut(s) 835
BstH2I RGCGCY 2 cut(s) 375, 437
BstHHI GCGC 2 cut(s) 374, 436
BstKTI GATC 3 cut(s) 576, 766, 887
BstMAI GTCTC 2 cut(s) 48, 359
BstMBI GATC 3 cut(s) 573, 763, 884
BstMWI GCNNNNNNNGC 5 cut(s) 95, 369, 442, 590, 636
BstNI CCWGG 2 cut(s) 38, 205
BstSCI CCNGG 2 cut(s) 36, 203
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 347
BstV1I GCAGC 4 cut(s) 347, 443, 707, 710
BstV2I GAAGAC 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 71
BsuRI GGCC 5 cut(s) 197, 550, 593, 636, 973
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 969
CfoI GCGC 2 cut(s) 374, 436
Cfr10I RCCGGY 2 cut(s) 91, 368
Cfr13I GGNCC 1 cut(s) 592
CspAI ACCGGT 1 cut(s) 91
CspCI CAANNNNNGTGG 4 cut(s) 492, 527, 973, 1008
CviAII CATG 2 cut(s) 33, 609
DdeI CTNAG 5 cut(s) 71, 255, 315, 682, 741
DinI GGCGCC 1 cut(s) 373
DpnI GATC 3 cut(s) 575, 765, 886
DpnII GATC 3 cut(s) 573, 763, 884
DraIII CACNNNGTG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 634
Eam1104I CTCTTC 5 cut(s) 150, 323, 750, 875, 942
EarI CTCTTC 5 cut(s) 150, 323, 750, 875, 942
EciI GGCGGA 1 cut(s) 888
Ecl136II GAGCTC 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 19, 287, 437
Eco147I AGGCCT 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 305, 1038
Eco31I GGTCTC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 3 cut(s) 174, 369, 376
Eco81I CCTNAGG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 36, 203
EcoT14I CCWWGG 3 cut(s) 19, 287, 437
EcoT38I GRGCYC 2 cut(s) 305, 1038
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
ErhI CCWWGG 3 cut(s) 19, 287, 437
FaeI CATG 2 cut(s) 36, 612
FaiI YATR 6 cut(s) 34, 174, 297, 459, 610, 737
FatI CATG 2 cut(s) 32, 608
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 6 cut(s) 361, 432, 526, 637, 696, 699
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 2 cut(s) 305, 1038
Fsp4HI GCNGC 6 cut(s) 361, 432, 526, 637, 696, 699
FspBI CTAG 3 cut(s) 239, 288, 939
GlaI GCGC 2 cut(s) 373, 435
GluI GCNGC 6 cut(s) 361, 432, 526, 637, 696, 699
GsuI CTGGAG 2 cut(s) 59, 226
HaeII RGCGCY 2 cut(s) 375, 437
HaeIII GGCC 5 cut(s) 197, 550, 593, 636, 973
HapII CCGG 2 cut(s) 92, 369
HhaI GCGC 2 cut(s) 374, 436
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 2 cut(s) 36, 612
Hin6I GCGC 2 cut(s) 372, 434
HinP1I GCGC 2 cut(s) 372, 434
HindIII AAGCTT 3 cut(s) 80, 141, 388
HinfI GANTC 6 cut(s) 41, 135, 416, 422, 533, 680
HpaII CCGG 2 cut(s) 92, 369
HphI GGTGA 6 cut(s) 41, 396, 493, 920, 956, 1010
Hpy166II GTNNAC 3 cut(s) 262, 345, 493
Hpy188I TCNGA 4 cut(s) 154, 415, 421, 685
Hpy188III TCNNGA 2 cut(s) 707, 767
Hpy8I GTNNAC 3 cut(s) 262, 345, 493
HpyAV CCTTC 5 cut(s) 472, 650, 713, 860, 983
HpyCH4V TGCA 7 cut(s) 28, 89, 165, 345, 431, 473, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 369, 442, 590, 636
HpyF3I CTNAG 5 cut(s) 71, 255, 315, 682, 741
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 2 cut(s) 36, 612
HspAI GCGC 2 cut(s) 372, 434
KasI GGCGCC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 3 cut(s) 573, 763, 884
LguI GCTCTTC 2 cut(s) 323, 750
LmnI GCTCC 4 cut(s) 58, 300, 442, 1033
LpnPI CCDG 9 cut(s) 23, 50, 105, 190, 217, 382, 541, 685, 964
Lsp1109I GCAGC 4 cut(s) 347, 443, 707, 710
LweI GCATC 1 cut(s) 454
MaeI CTAG 3 cut(s) 239, 288, 939
MaeIII GTNAC 1 cut(s) 310
MalI GATC 3 cut(s) 575, 765, 886
MboI GATC 3 cut(s) 573, 763, 884
MhlI GDGCHC 3 cut(s) 305, 347, 1038
MluCI AATT 7 cut(s) 114, 128, 169, 461, 496, 797, 809
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 2 cut(s) 50, 674
MseI TTAA 3 cut(s) 599, 1022, 1054
MspI CCGG 2 cut(s) 92, 369
MspR9I CCNGG 2 cut(s) 38, 205
Mva1269I GAATGC 2 cut(s) 433, 940
MvaI CCWGG 2 cut(s) 38, 205
MwoI GCNNNNNNNGC 5 cut(s) 95, 369, 442, 590, 636
NarI GGCGCC 1 cut(s) 372
NdeII GATC 3 cut(s) 573, 763, 884
NlaIII CATG 2 cut(s) 36, 612
NlaIV GGNNCC 4 cut(s) 60, 373, 594, 1035
PaqCI CACCTGC 1 cut(s) 969
PceI AGGCCT 1 cut(s) 550
PciSI GCTCTTC 2 cut(s) 323, 750
PctI GAATGC 2 cut(s) 433, 940
PfeI GAWTC 4 cut(s) 135, 416, 422, 533
PflMI CCANNNNNTGG 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 6 cut(s) 362, 433, 527, 638, 697, 700
PleI GAGTC 2 cut(s) 49, 674
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 2 cut(s) 49, 674
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 36, 203
PspGI CCWGG 2 cut(s) 36, 203
PspN4I GGNNCC 4 cut(s) 60, 373, 594, 1035
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 305
SapI GCTCTTC 2 cut(s) 323, 750
SaqAI TTAA 3 cut(s) 599, 1022, 1054
SatI GCNGC 6 cut(s) 361, 432, 526, 637, 696, 699
Sau3AI GATC 3 cut(s) 573, 763, 884
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 2 cut(s) 50, 674
ScrFI CCNGG 2 cut(s) 38, 205
SduI GDGCHC 3 cut(s) 305, 347, 1038
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 373
Sse9I AATT 7 cut(s) 114, 128, 169, 461, 496, 797, 809
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 4 cut(s) 525, 637, 873, 996
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 3 cut(s) 239, 288, 939
SstI GAGCTC 1 cut(s) 305
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 36, 203
StyI CCWWGG 3 cut(s) 19, 287, 437
TaqI TCGA 3 cut(s) 425, 643, 918
TasI AATT 7 cut(s) 114, 128, 169, 461, 496, 797, 809
TauI GCSGC 2 cut(s) 528, 639
TfiI GAWTC 4 cut(s) 135, 416, 422, 533
Tru1I TTAA 3 cut(s) 599, 1022, 1054
Tru9I TTAA 3 cut(s) 599, 1022, 1054
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 360, 431, 695, 698
TspDTI ATGAA 2 cut(s) 597, 732
TspRI CASTG 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 204
VneI GTGCAC 1 cut(s) 343
XapI RAATTY 1 cut(s) 461
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 3 cut(s) 239, 288, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.