Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014484

Physical Location & Seq

Genomic Coordinates Reverse (-)

16731876 .. 16733407

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGGTGACGGTTCTTCTGAGCCCAATACGTGTTTCAGCTTCTCTCAACCCAAAACGCCTTTCTATTTTCTGCCATCAATCCCATTCACAAAATCGAGCCTTCGCACGCAAGATAATCCGGAAATGGAAGCGGGATGAGTGTTTTAATGGCCAAGCTACTTACGTAGATTGCGTGCGGATAATTCGGAGTTTAAGTGAACAAAGGTTGCCTCATGTAGCTCAGGAGCTTTTACTCGAAATGAAATCGGATGGTCTTTTGCCCAGCAACTCCACTCTATCTGCTTTGATGCTATGCCATGCCAACAATGGCCTTTTTCCTCAAGCGGAAGCAGTGTGGAACGAAATGTTATATTCTTCTTTTGTGCCTAGTATTCAGGTTGTTTCGCAGTTATTTGATGTTTATGGAAATGCGGGATGTTTTGAAAAAGTGCATGAAATTTTGGGCCAGATAAGGGCTAGGTATTTGAGTTTGTTTCCGGAGGTTTACTCGCTAGCTATCTCTTGTTTTGGGAAGGGAGGCCAGCTTGAATTGATGGAAGGTGCATTGAAAGAAATGATTTCAATGGGTTTCCCGGTGGACTCTGCCACTGGAAATGCCTTTATCAGATACTATAGCATTTTTGGTTCCCTGACTGAGATGGAGACCGCTTATGGCCGCCTTAAAAGGTCTAGGTTTCTGATAGAGGAAGAGGGAATCCGGGCAATGTCATTTGCGTATCTGAAGCGCAGCAAGTTTTATGAATTAGCTGAGTTCCTGAAGGATGTAGGTCTAGGTAGAAGAAACTTGGGAAATCTTCTGTGGAACCTTTTGTTGTTATCCTATGCTGCGAATTTTAAGATGAAAAGCTTACAAAGAGAATTTTTGAGAATGGTGGAAGCTGGTTTCCACCCCGATCTTACTACATTTAATATTCGTGCTCTGGCCTTTTCAAAGATGTCTCTACTGTGGGATCTCCATCTTAGCCTTGAACACATGAAACATGAGAAAGTTGTTCCCGATCTTGTGACTTGCGGCTGTGTTGTTGATGCATACTTGGATAGAAGACTAGGACGGAATTTGTATTTTGCCCTCAATAAAATGAATTTGGATGATTCCCCACTGGTATTAACGGATCCATTTGTGTTTGAAGTTTTGGGAAAAGGAGACTTTCATGCAAGCTCAGAGGCATTTTTGGAGTTCCAGAGGCAAAGGGAATGGACTTATAGGAAGTTAATTTCAGTATATTTGAAAAAAACATACCGGAGGAATCAGATCTTTTGGAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070129 GO:0070131 GO:0070132 GO:0070134 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

424

Amino Acids

48.79

Weight (kDa)

9.04

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42630
fragaria_vesca	FvH4_4g06090
malus_domestica	MD11G1028400.v1.1 MD13G1233100.v1.1
prunus_persica	Prupe.1G064400_v2.0.a1
pyrus_communis	pycom13g20590
rosa_chinensis	RchiOBHm_Chr4g0397671
rosa_laevigata	RLG00000009420
rosa_multiflora	Rmu_sc0002729.1_g000007
rosa_roxburghii	Rroxscaffold_5G00342470
rosa_rugosa	Rorug03G0342000 Rorug03G0342000
rosa_samantha	Rh4AG079700 Rh4BG077600 Rh4CG085700 Rh4DG072700
rosa_wichuraiana	Rw4G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	120, 478
AciI	CCGC	7 cut(s)	133, 178, 326, 413, 648, 658, 1014
AclWI	GGATC	3 cut(s)	960, 1109, 1122
AcoI	YGGCCR	2 cut(s)	151, 655
AcsI	RAATTY	5 cut(s)	438, 832, 860, 1057, 1084
AcuI	CTGAAG	2 cut(s)	743, 779
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	8 cut(s)	425, 530, 550, 564, 933, 971, 1130, 1231
AjuI	GAANNNNNNNTTGG	4 cut(s)	19, 46, 51, 78
Alw21I	GWGCWC	1 cut(s)	922
Alw26I	GTCTC	3 cut(s)	638, 945, 1140
AlwI	GGATC	3 cut(s)	960, 1109, 1122
Aor13HI	TCCGGA	2 cut(s)	120, 478
AoxI	GGCC	6 cut(s)	151, 310, 445, 520, 655, 924
ApeKI	GCWGC	2 cut(s)	729, 827
ApoI	RAATTY	5 cut(s)	438, 832, 860, 1057, 1084
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	2 cut(s)	575, 701
AsuHPI	GGTGA	1 cut(s)	19
AsuNHI	GCTAGC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	1114
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	1051
Bbv12I	GWGCWC	1 cut(s)	922
BbvI	GCAGC	2 cut(s)	741, 814
BccI	CCATC	5 cut(s)	84, 245, 529, 634, 966
BcnI	CCSGG	2 cut(s)	575, 701
BcoDI	GTCTC	3 cut(s)	638, 945, 1140
BfaI	CTAG	6 cut(s)	369, 459, 494, 672, 773, 1049
BfmI	CTRYAG	1 cut(s)	613
BglII	AGATCT	1 cut(s)	1254
BisI	GCNGC	4 cut(s)	658, 730, 828, 1015
BlsI	GCNGC	4 cut(s)	659, 731, 829, 1016
Bme1390I	CCNGG	2 cut(s)	575, 701
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	628, 806, 1116
BmrFI	CCNGG	2 cut(s)	575, 701
BmsI	GCATC	2 cut(s)	279, 1018
BmtI	GCTAGC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	1051
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	575, 701
BsaAI	YACGTR	2 cut(s)	32, 166
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	638
BsaWI	WCCGGW	3 cut(s)	120, 478, 1242
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	2 cut(s)	595, 1107
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	2 cut(s)	120, 478
BseGI	GGATG	5 cut(s)	142, 256, 422, 769, 1096
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	5 cut(s)	11, 236, 627, 741, 1176
BseNI	ACTGG	2 cut(s)	595, 1107
BseXI	GCAGC	2 cut(s)	741, 814
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	6 cut(s)	153, 312, 447, 522, 657, 926
BsiHKAI	GWGCWC	1 cut(s)	922
BsiSI	CCGG	5 cut(s)	121, 479, 575, 700, 1243
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	3 cut(s)	638, 945, 1140
BsnI	GGCC	6 cut(s)	153, 312, 447, 522, 657, 926
Bso31I	GGTCTC	1 cut(s)	638
Bsp1286I	GDGCHC	2 cut(s)	26, 922
Bsp13I	TCCGGA	2 cut(s)	120, 478
Bsp143I	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
BspACI	CCGC	7 cut(s)	133, 178, 326, 413, 648, 658, 1014
BspANI	GGCC	6 cut(s)	153, 312, 447, 522, 657, 926
BspCNI	CTCAG	5 cut(s)	12, 235, 628, 742, 1175
BspEI	TCCGGA	2 cut(s)	120, 478
BspLI	GGNNCC	3 cut(s)	628, 806, 1116
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	3 cut(s)	960, 1109, 1122
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	595, 1107
BssMI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
Bst4CI	ACNGT	2 cut(s)	13, 948
Bst6I	CTCTTC	1 cut(s)	684
BstBAI	YACGTR	2 cut(s)	32, 166
BstC8I	GCNNGC	5 cut(s)	109, 176, 495, 524, 1159
BstDEI	CTNAG	6 cut(s)	20, 222, 636, 750, 962, 1162
BstF5I	GGATG	5 cut(s)	142, 256, 422, 769, 1096
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	5 cut(s)	898, 955, 1003, 1117, 1257
BstMAI	GTCTC	3 cut(s)	638, 945, 1140
BstMBI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
BstSCI	CCNGG	2 cut(s)	573, 699
BstSFI	CTRYAG	1 cut(s)	613
BstSNI	TACGTA	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	741, 814
BstV2I	GAAGAC	1 cut(s)	1051
BstX2I	RGATCY	3 cut(s)	952, 1114, 1254
BstYI	RGATCY	3 cut(s)	952, 1114, 1254
BsuRI	GGCC	6 cut(s)	153, 312, 447, 522, 657, 926
BtsCI	GGATG	5 cut(s)	142, 256, 422, 769, 1096
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	339, 588, 1100
Cac8I	GCNNGC	5 cut(s)	109, 176, 495, 524, 1159
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	1 cut(s)	445
CviAII	CATG	6 cut(s)	215, 299, 434, 976, 983, 1154
DdeI	CTNAG	6 cut(s)	20, 222, 636, 750, 962, 1162
DpnI	GATC	5 cut(s)	897, 954, 1002, 1116, 1256
DpnII	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
EaeI	YGGCCR	2 cut(s)	151, 655
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco105I	TACGTA	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	743, 779
EcoT22I	ATGCAT	1 cut(s)	1033
EcoT38I	GRGCYC	1 cut(s)	26
FaeI	CATG	6 cut(s)	218, 302, 437, 979, 986, 1157
FatI	CATG	6 cut(s)	214, 298, 433, 975, 982, 1153
FauI	CCCGC	2 cut(s)	126, 406
Fnu4HI	GCNGC	4 cut(s)	658, 730, 828, 1015
FokI	GGATG	5 cut(s)	149, 263, 429, 776, 1103
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	658, 730, 828, 1015
FspBI	CTAG	6 cut(s)	369, 459, 494, 672, 773, 1049
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	4 cut(s)	658, 730, 828, 1015
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	6 cut(s)	153, 312, 447, 522, 657, 926
HapII	CCGG	5 cut(s)	121, 479, 575, 700, 1243
HhaI	GCGC	1 cut(s)	729
Hin1II	CATG	6 cut(s)	218, 302, 437, 979, 986, 1157
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	4 cut(s)	581, 696, 1094, 1249
HpaII	CCGG	5 cut(s)	121, 479, 575, 700, 1243
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	3 cut(s)	200, 487, 580
Hpy188I	TCNGA	8 cut(s)	21, 189, 250, 608, 681, 723, 1165, 1254
Hpy188III	TCNNGA	6 cut(s)	121, 224, 479, 757, 998, 1183
Hpy8I	GTNNAC	3 cut(s)	200, 487, 580
HpyAV	CCTTC	4 cut(s)	112, 508, 533, 754
HpyCH4III	ACNGT	2 cut(s)	13, 948
HpyCH4IV	ACGT	2 cut(s)	31, 165
HpyCH4V	TGCA	4 cut(s)	433, 545, 1031, 1157
HpyF3I	CTNAG	6 cut(s)	20, 222, 636, 750, 962, 1162
HpySE526I	ACGT	2 cut(s)	31, 165
Hsp92II	CATG	6 cut(s)	218, 302, 437, 979, 986, 1157
HspAI	GCGC	1 cut(s)	727
Kpn2I	TCCGGA	2 cut(s)	120, 478
Kzo9I	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	741, 814
LweI	GCATC	2 cut(s)	279, 1018
MaeI	CTAG	6 cut(s)	369, 459, 494, 672, 773, 1049
MaeII	ACGT	2 cut(s)	31, 165
MaeIII	GTNAC	2 cut(s)	7, 1006
MalI	GATC	5 cut(s)	897, 954, 1002, 1116, 1256
MboI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
MboII	GAAGA	6 cut(s)	8, 348, 701, 788, 792, 1056
MflI	RGATCY	3 cut(s)	952, 1114, 1254
MhlI	GDGCHC	2 cut(s)	26, 922
MlsI	TGGCCA	1 cut(s)	153
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	575
Mox20I	TGGCCA	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	1033
MroI	TCCGGA	2 cut(s)	120, 478
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	7 cut(s)	147, 194, 663, 837, 909, 1109, 1214
Msp20I	TGGCCA	1 cut(s)	153
MspI	CCGG	5 cut(s)	121, 479, 575, 700, 1243
MspR9I	CCNGG	2 cut(s)	575, 701
NciI	CCSGG	2 cut(s)	575, 701
NdeII	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	6 cut(s)	218, 302, 437, 979, 986, 1157
NlaIV	GGNNCC	3 cut(s)	628, 806, 1116
NmuCI	GTSAC	2 cut(s)	7, 1006
NsiI	ATGCAT	1 cut(s)	1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	696, 1094, 1249
PkrI	GCNGC	4 cut(s)	659, 731, 829, 1016
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	2 cut(s)	32, 166
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	628, 806, 1116
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	952, 1114, 1254
SaqAI	TTAA	7 cut(s)	147, 194, 663, 837, 909, 1109, 1214
SatI	GCNGC	4 cut(s)	658, 730, 828, 1015
Sau3AI	GATC	5 cut(s)	895, 952, 1000, 1114, 1254
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	575, 701
SduI	GDGCHC	2 cut(s)	26, 922
SfaNI	GCATC	2 cut(s)	279, 1018
SfcI	CTRYAG	1 cut(s)	613
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SnaBI	TACGTA	1 cut(s)	166
SsiI	CCGC	7 cut(s)	133, 178, 326, 413, 648, 658, 1014
SspI	AATATT	1 cut(s)	913
SspMI	CTAG	6 cut(s)	369, 459, 494, 672, 773, 1049
StyD4I	CCNGG	2 cut(s)	573, 699
TaaI	ACNGT	2 cut(s)	13, 948
TaiI	ACGT	2 cut(s)	34, 168
TaqI	TCGA	2 cut(s)	97, 237
TauI	GCSGC	2 cut(s)	660, 1017
TfiI	GAWTC	3 cut(s)	696, 1094, 1249
Tru1I	TTAA	7 cut(s)	147, 194, 663, 837, 909, 1109, 1214
Tru9I	TTAA	7 cut(s)	147, 194, 663, 837, 909, 1109, 1214
TscAI	CASTG	3 cut(s)	339, 595, 1107
TseFI	GTSAC	2 cut(s)	7, 1006
TseI	GCWGC	2 cut(s)	729, 827
Tsp45I	GTSAC	2 cut(s)	7, 1006
TspDTI	ATGAA	7 cut(s)	257, 450, 756, 857, 992, 1097, 1142
TspGWI	ACGGA	2 cut(s)	1069, 1127
TspRI	CASTG	3 cut(s)	339, 595, 1107
XapI	RAATTY	5 cut(s)	438, 832, 860, 1057, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	6 cut(s)	369, 459, 494, 672, 773, 1049
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.