Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007108

Physical Location & Seq

Genomic Coordinates Forward (+)

393912 .. 395117

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATATCCGGCAGGCAGAAGAGCAGCCGGTCTCTGGTGTCGCCGTCCAGCTCGCGCTTCGTGACGGAAACCGTTAACGGGTCCCACAACTTCGTCATCAAAGGGTACTCCTTGGCCAAAGGAATTGGGGTCGGAAAGCACATTGCCAGTGAGAATTTCACCGTCGGGGGGTTTCAATGGGCCATCTATTTTTACCCTGATGGTAAAAACCCTGAGGATAACTCAGCTTACGTCTCCGTCTTCATTGCCCTCGCCTCCGAGGGCACCGACGTCCGAGCTCTCTTCGAATTGACACTCGTTGATCAGGGTCCTAATGGCAAGCACAAGGTCCATAGCCACTTCGATCGCTCGCTCGAAAGCGGGCCTTACACCCTCAAGTATAGGGGCAGCATGTGGGGCTACAAACGATTTTTCAGACGGACACTGCTCGAATCATCTAGTTTCCTCAAGGATGATTGCTTGAAAATTAATTGCACTGTTGGTGTTGTGGTTTCTGCAATAGATAGTTCGAGATTGCACTCCATACATGTCCCCGATTCTGATATTGGATCGATCATTTTGGTATGCTTTTGGAGAATGAGGAAGGTTCAGATGTTACTTTCAATGTATGTGGAGAAAGGTTTCATGCCCACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

213

Amino Acids

23.65

Weight (kDa)

9.36

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	29 - 160	1.4e-29	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03740 AT3G43700 AT3G43700 AT3G43700 AT5G21010
fragaria_vesca	FvH4_1g28561 FvH4_1g28561 FvH4_1g28561
malus_domestica	MD12G1010200.v1.1 MD14G1007300.v1.1
prunus_persica	Prupe.7G012100_v2.0.a1
pyrus_communis	pycom12g00790 pycom14g00590 pycom14g00600
rosa_chinensis	RchiOBHm_Chr3g0496191
rosa_laevigata	RLG00000022553
rosa_multiflora	Rmu_co8262413.1_g000001 Rmu_sc0006695.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389480
rosa_rugosa	Rorug03G0280400
rosa_samantha	Rh3AG327200 Rh3BG363400 Rh3CG360100 Rh3DG363300
rosa_wichuraiana	Rw3G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	55
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	34, 78, 168
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	176, 463, 603
AluBI	AGCT	3 cut(s)	51, 227, 278
AluI	AGCT	3 cut(s)	51, 227, 278
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	36, 238
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	3 cut(s)	114, 180, 362
ApeKI	GCWGC	2 cut(s)	24, 387
ApoI	RAATTY	1 cut(s)	154
AseI	ATTAAT	1 cut(s)	468
Asp700I	GAANNNNTTC	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	5 cut(s)	81, 180, 308, 328, 362
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	285
AvaII	GGWCC	3 cut(s)	81, 308, 328
AxyI	CCTNAGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	36, 399
BccI	CCATC	2 cut(s)	191, 194
BceAI	ACGGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	2 cut(s)	36, 238
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	25, 388
BlsI	GCNGC	2 cut(s)	26, 389
Bme18I	GGWCC	3 cut(s)	81, 308, 328
BmgT120I	GGNCC	5 cut(s)	81, 180, 308, 328, 362
BmiI	GGNNCC	4 cut(s)	82, 83, 265, 309
BpiI	GAAGAC	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu14I	TTCGAA	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	359, 431
Bsa29I	ATCGAT	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	111, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 78, 168
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	213
Bse3DI	GCAATG	2 cut(s)	141, 243
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	111, 258
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	34, 78, 168
BseMI	GCAATG	2 cut(s)	141, 243
BseMII	CTCAG	2 cut(s)	204, 237
BseNI	ACTGG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	36, 399
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	3 cut(s)	116, 182, 364
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	551
BsiEI	CGRYCG	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	9, 28
BslFI	GGGAC	2 cut(s)	67, 515
BslI	CCNNNNNNNGG	3 cut(s)	34, 78, 168
BsmAI	GTCTC	2 cut(s)	36, 238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	2 cut(s)	67, 515
BsnI	GGCC	3 cut(s)	116, 182, 364
Bso31I	GGTCTC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	266, 280
Bsp143I	GATC	4 cut(s)	301, 343, 548, 552
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	3 cut(s)	116, 182, 364
BspCNI	CTCAG	2 cut(s)	205, 236
BspDI	ATCGAT	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	82, 83, 265, 309
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	141, 243
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	111, 258
BssMI	GATC	4 cut(s)	301, 343, 548, 552
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	73, 163, 478
Bst6I	CTCTTC	2 cut(s)	14, 287
BstACI	GRCGYC	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	5 cut(s)	14, 53, 320, 350, 362
BstDEI	CTNAG	2 cut(s)	213, 223
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	304, 346, 551, 555
BstMAI	GTCTC	2 cut(s)	36, 238
BstMBI	GATC	4 cut(s)	301, 343, 548, 552
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNSI	RCATGY	2 cut(s)	394, 530
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	36, 399
BstV2I	GAAGAC	1 cut(s)	232
Bsu15I	ATCGAT	1 cut(s)	551
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	116, 182, 364
BsuTUI	ATCGAT	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	154, 422, 474
Cac8I	GCNNGC	5 cut(s)	14, 53, 320, 350, 362
CfoI	GCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	5 cut(s)	81, 180, 308, 328, 362
ClaI	ATCGAT	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	106
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	3 cut(s)	391, 527, 625
CviJI	RGCY	9 cut(s)	27, 51, 116, 182, 227, 278, 336, 364, 399
CviKI_1	RGCY	9 cut(s)	27, 51, 116, 182, 227, 278, 336, 364, 399
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	213, 223
DpnI	GATC	4 cut(s)	303, 345, 550, 554
DpnII	GATC	4 cut(s)	301, 343, 548, 552
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	14, 287
EarI	CTCTTC	2 cut(s)	14, 287
Ecl136II	GAGCTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	3 cut(s)	81, 308, 328
Eco53kI	GAGCTC	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	278
EcoO109I	RGGNCCY	2 cut(s)	81, 308
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	394, 530, 628
FaiI	YATR	8 cut(s)	333, 381, 392, 524, 528, 565, 609, 626
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	2 cut(s)	67, 515
FatI	CATG	3 cut(s)	390, 526, 624
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	25, 388
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	280
Fsp4HI	GCNGC	2 cut(s)	25, 388
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	25, 388
HaeIII	GGCC	3 cut(s)	116, 182, 364
HapII	CCGG	2 cut(s)	9, 28
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	394, 530, 628
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	431, 536
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	9, 28
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	6 cut(s)	134, 259, 275, 416, 541, 591
Hpy188III	TCNNGA	2 cut(s)	61, 510
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	2 cut(s)	167, 272
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	3 cut(s)	73, 163, 478
HpyCH4IV	ACGT	2 cut(s)	231, 270
HpyCH4V	TGCA	3 cut(s)	474, 497, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	2 cut(s)	213, 223
HpySE526I	ACGT	2 cut(s)	231, 270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	394, 530, 628
HspAI	GCGC	1 cut(s)	55
KflI	GGGWCCC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	301, 343, 548, 552
LguI	GCTCTTC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	20, 22, 41, 61, 160, 210, 225, 290
Lsp1109I	GCAGC	2 cut(s)	36, 399
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	231, 270
MaeIII	GTNAC	2 cut(s)	61, 594
MalI	GATC	4 cut(s)	303, 345, 550, 554
MboI	GATC	4 cut(s)	301, 343, 548, 552
MboII	GAAGA	3 cut(s)	31, 232, 274
MhlI	GDGCHC	2 cut(s)	266, 280
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	5 cut(s)	123, 154, 287, 465, 469
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	7 cut(s)	208, 253, 260, 265, 383, 455, 573
Mox20I	TGGCCA	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	75, 468
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	2 cut(s)	9, 28
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeII	GATC	4 cut(s)	301, 343, 548, 552
NlaIII	CATG	3 cut(s)	394, 530, 628
NlaIV	GGNNCC	4 cut(s)	82, 83, 265, 309
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	2 cut(s)	394, 530
NspV	TTCGAA	1 cut(s)	285
PciI	ACATGT	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	431, 536
PkrI	GCNGC	2 cut(s)	26, 389
Ple19I	CGATCG	1 cut(s)	346
PpuMI	RGGWCCY	2 cut(s)	81, 308
PscI	ACATGT	1 cut(s)	526
PshBI	ATTAAT	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	280
Psp5II	RGGWCCY	2 cut(s)	81, 308
PspN4I	GGNNCC	4 cut(s)	82, 83, 265, 309
PspPI	GGNCC	5 cut(s)	81, 180, 308, 328, 362
PspPPI	RGGWCCY	2 cut(s)	81, 308
PvuI	CGATCG	1 cut(s)	346
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	75, 468
SatI	GCNGC	2 cut(s)	25, 388
Sau3AI	GATC	4 cut(s)	301, 343, 548, 552
Sau96I	GGNCC	5 cut(s)	81, 180, 308, 328, 362
SduI	GDGCHC	2 cut(s)	266, 280
SetI	ASST	8 cut(s)	53, 229, 234, 273, 280, 330, 588, 622
SfuI	TTCGAA	1 cut(s)	285
SinI	GGWCC	3 cut(s)	81, 308, 328
SmlI	CTYRAG	2 cut(s)	374, 446
SmoI	CTYRAG	2 cut(s)	374, 446
Sse9I	AATT	5 cut(s)	123, 154, 287, 465, 469
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	73, 163, 478
TaiI	ACGT	2 cut(s)	234, 273
TaqI	TCGA	6 cut(s)	285, 342, 354, 429, 509, 551
TasI	AATT	5 cut(s)	123, 154, 287, 465, 469
TfiI	GAWTC	2 cut(s)	431, 536
Tru1I	TTAA	2 cut(s)	75, 468
Tru9I	TTAA	2 cut(s)	75, 468
TscAI	CASTG	3 cut(s)	154, 429, 481
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	24, 387
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	232, 613
TspGWI	ACGGA	3 cut(s)	80, 226, 433
TspRI	CASTG	3 cut(s)	154, 429, 481
VpaK11BI	GGWCC	3 cut(s)	81, 308, 328
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	2 cut(s)	394, 530
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.