Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007108

Physical Location & Seq

Genomic Coordinates Forward (+)

395165 .. 397454

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAAGAAGAGAATCATGATGTAGTTGTTACAGATACAGATCCCAAGGTCTTTAAGGCGTTGTTACACTTCATATACACAGATAACCTTATTGAAGATGAAGAGTTGTCAGATGCAAGTTCACTGTGCATGTCTTCTCTATCTGATGGATTAGCTGCCAAGTTGCTTGCTGCATCAGACAAATATGGGTTACCTCGACTCAGACTGATGTGTGAATCTGTTCTCTGCAAGATTATGTCTGTTAATTCTGTTGCCATTATTCTGGCCCTGGCCGACCGTTATCGTGCTATCGATCTAAAGTCTGTTTGCCTAAAGTTTGCTGCTGAAAACCTAGTTGCCGTCATGGAATCGGATGGTTTTGAGTATCTCAAGGAAAACTGCCCACTGCTGCAGTCGGAGCTGCTGAAGACAGTTGCGGGCTGTGACGAGGAACTTAGCGGAGGGGAAAAGACTCGGAGTGTGTGGGGCCAGTTTTCTGACGGAGGGGATACAAATGACAGGAGTGTAAGGCAACGAACCTGGGAAAATGGAGGCGAGAGAAGTCAAAGCATTTGGGTCCCGCTTTCGGATGGTGGTGATGCAAGAGGTAGGAGTAGAAGTAGGAGTCCCAGGCAAGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

208

Amino Acids

22.87

Weight (kDa)

4.8

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	4 - 77	9.3e-07	BTB/POZ domain
BACK_BPM_SPOP	PF24570	83 - 135	9e-17	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03740 AT3G43700 AT3G43700 AT3G43700 AT5G21010
fragaria_vesca	FvH4_1g28561 FvH4_1g28561 FvH4_1g28561
malus_domestica	MD12G1010200.v1.1 MD14G1007300.v1.1
prunus_persica	Prupe.7G012100_v2.0.a1
pyrus_communis	pycom12g00790 pycom14g00590 pycom14g00600
rosa_chinensis	RchiOBHm_Chr3g0496191
rosa_laevigata	RLG00000022553
rosa_multiflora	Rmu_co8262413.1_g000001 Rmu_sc0006695.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389480
rosa_rugosa	Rorug03G0280400
rosa_samantha	Rh3AG327200 Rh3BG363400 Rh3CG360100 Rh3DG363300
rosa_wichuraiana	Rw3G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	416, 438, 560
AclWI	GGATC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	95
AjnI	CCWGG	3 cut(s)	267, 518, 608
AluBI	AGCT	2 cut(s)	155, 400
AluI	AGCT	2 cut(s)	155, 400
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	3 cut(s)	264, 270, 466
ApeKI	GCWGC	5 cut(s)	155, 170, 320, 388, 400
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	265, 466, 556
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	556
BbsI	GAAGAC	2 cut(s)	126, 413
BbvI	GCAGC	5 cut(s)	142, 157, 307, 375, 387
BccI	CCATC	3 cut(s)	140, 347, 563
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	269, 520, 610
BciVI	GTATCC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	5 cut(s)	156, 171, 321, 389, 401
BlsI	GCNGC	5 cut(s)	157, 172, 322, 390, 402
Bme1390I	CCNGG	3 cut(s)	269, 520, 610
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	3 cut(s)	265, 466, 556
BmiI	GGNNCC	3 cut(s)	467, 557, 558
BmrFI	CCNGG	3 cut(s)	269, 520, 610
BmsI	GCATC	3 cut(s)	103, 182, 568
BpiI	GAAGAC	2 cut(s)	126, 413
BpuEI	CTTGAG	1 cut(s)	353
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	45, 267, 519, 608
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	269, 520, 610
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	45, 267, 519, 608
BseGI	GGATG	2 cut(s)	358, 574
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	142, 157, 307, 375, 387
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	266, 272, 468
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	277
BslFI	GGGAC	2 cut(s)	542, 591
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmFI	GGGAC	2 cut(s)	542, 591
BsnI	GGCC	3 cut(s)	266, 272, 468
Bsp143I	GATC	2 cut(s)	40, 292
BspACI	CCGC	3 cut(s)	416, 438, 560
BspANI	GGCC	3 cut(s)	266, 272, 468
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	3 cut(s)	467, 557, 558
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	4 cut(s)	45, 267, 519, 608
BssMI	GATC	2 cut(s)	40, 292
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	269, 520, 610
Bst4CI	ACNGT	3 cut(s)	126, 278, 412
Bst6I	CTCTTC	2 cut(s)	3, 96
BstC8I	GCNNGC	2 cut(s)	168, 418
BstDEI	CTNAG	2 cut(s)	200, 434
BstEII	GGTNACC	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	358, 574
BstKTI	GATC	2 cut(s)	43, 295
BstMBI	GATC	2 cut(s)	40, 292
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	269, 520, 610
BstNSI	RCATGY	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	3 cut(s)	267, 518, 608
BstSFI	CTRYAG	1 cut(s)	389
BstV1I	GCAGC	5 cut(s)	142, 157, 307, 375, 387
BstV2I	GAAGAC	2 cut(s)	126, 413
BstX2I	RGATCY	1 cut(s)	40
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	3 cut(s)	266, 272, 468
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	358, 574
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	122, 383
Cac8I	GCNNGC	2 cut(s)	168, 418
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	265, 466, 556
ClaI	ATCGAT	1 cut(s)	291
CviAII	CATG	3 cut(s)	17, 130, 343
CviJI	RGCY	6 cut(s)	155, 266, 272, 400, 420, 468
CviKI_1	RGCY	6 cut(s)	155, 266, 272, 400, 420, 468
DdeI	CTNAG	2 cut(s)	200, 434
DpnI	GATC	2 cut(s)	42, 294
DpnII	GATC	2 cut(s)	40, 292
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	3, 96
EarI	CTCTTC	2 cut(s)	3, 96
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	556
EcoO65I	GGTNACC	1 cut(s)	189
EcoRII	CCWGG	3 cut(s)	267, 518, 608
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	20, 133, 346
FaiI	YATR	7 cut(s)	18, 74, 76, 131, 186, 236, 344
FaqI	GGGAC	2 cut(s)	542, 591
FatI	CATG	3 cut(s)	16, 129, 342
FauI	CCCGC	2 cut(s)	409, 567
Fnu4HI	GCNGC	5 cut(s)	156, 171, 321, 389, 401
FokI	GGATG	2 cut(s)	365, 581
Fsp4HI	GCNGC	5 cut(s)	156, 171, 321, 389, 401
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	5 cut(s)	156, 171, 321, 389, 401
HaeIII	GGCC	3 cut(s)	266, 272, 468
Hin1II	CATG	3 cut(s)	20, 133, 346
HinfI	GANTC	6 cut(s)	13, 198, 215, 347, 451, 604
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	9 cut(s)	112, 145, 178, 203, 352, 397, 456, 478, 568
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	3 cut(s)	126, 278, 412
HpyCH4V	TGCA	6 cut(s)	116, 129, 173, 228, 391, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	2 cut(s)	200, 434
Hsp92II	CATG	3 cut(s)	20, 133, 346
KflI	GGGWCCC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	40, 292
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	248, 254, 281, 482, 484, 505, 532, 595
Lsp1109I	GCAGC	5 cut(s)	142, 157, 307, 375, 387
LweI	GCATC	3 cut(s)	103, 182, 568
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	4 cut(s)	28, 63, 189, 422
MalI	GATC	2 cut(s)	42, 294
MboI	GATC	2 cut(s)	40, 292
MboII	GAAGA	5 cut(s)	20, 107, 113, 126, 418
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	3 cut(s)	192, 445, 613
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	6 cut(s)	204, 421, 434, 476, 524, 578
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	2 cut(s)	54, 243
MspR9I	CCNGG	3 cut(s)	269, 520, 610
MvaI	CCWGG	3 cut(s)	269, 520, 610
MwoI	GCNNNNNNNGC	1 cut(s)	397
NdeII	GATC	2 cut(s)	40, 292
NlaIII	CATG	3 cut(s)	20, 133, 346
NlaIV	GGNNCC	3 cut(s)	467, 557, 558
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	1 cut(s)	133
PagI	TCATGA	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	13, 215, 347
PkrI	GCNGC	5 cut(s)	157, 172, 322, 390, 402
PleI	GAGTC	3 cut(s)	192, 445, 612
PpsI	GAGTC	3 cut(s)	192, 445, 612
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	3 cut(s)	267, 518, 608
PspEI	GGTNACC	1 cut(s)	189
PspGI	CCWGG	3 cut(s)	267, 518, 608
PspN4I	GGNNCC	3 cut(s)	467, 557, 558
PspPI	GGNCC	3 cut(s)	265, 466, 556
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	54, 243
SatI	GCNGC	5 cut(s)	156, 171, 321, 389, 401
Sau3AI	GATC	2 cut(s)	40, 292
Sau96I	GGNCC	3 cut(s)	265, 466, 556
SchI	GAGTC	3 cut(s)	192, 445, 613
ScrFI	CCNGG	3 cut(s)	269, 520, 610
SetI	ASST	8 cut(s)	51, 90, 157, 196, 333, 402, 521, 589
SfaNI	GCATC	3 cut(s)	103, 182, 568
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	3 cut(s)	416, 438, 560
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	3 cut(s)	267, 518, 608
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	126, 278, 412
TaqI	TCGA	2 cut(s)	196, 291
TasI	AATT	1 cut(s)	244
TfiI	GAWTC	3 cut(s)	13, 215, 347
Tru1I	TTAA	2 cut(s)	54, 243
Tru9I	TTAA	2 cut(s)	54, 243
TscAI	CASTG	2 cut(s)	129, 390
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	5 cut(s)	155, 170, 320, 388, 400
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	3 cut(s)	17, 61, 114
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	129, 390
VpaK11BI	GGWCC	1 cut(s)	556
XceI	RCATGY	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.