Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004119

Physical Location & Seq

Genomic Coordinates Reverse (-)

798259 .. 800404

Gene Structure 2146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTTTGATGGAAGGGAATCTGATTGCTCTGCAATTGGTTGCGCCTCTGATTGTTTGGTTTTTGCTGGGTGCATGCGATTCACAAAGGGTGTATAACGAGCCGATTCGCAGGTATTTGGTTGCTTCTGGAACAGAAGAAAGTAAAGAACCATGCCCTGCTGGATGGATTCTTGGACCTAATAGGAGGAAGTGCTTTGGTTATATGAGAAGCCCCCAACCATGGAATGAGTCAGAAACCCATTGTAAAAGTTATAATGGCAACTTAGCAGCATTCAAAACATCTCAAGAACTTACGTTTGCTCAAAATATATGTGCTGAAACCAGTGGCTGCTGGGTTGGAGGCAGAGGTGTGAACTCTACCATTGGTCTTGGCTGGAATTGGTCTGATAATACTTCCTATTGGAATGGGTCTCTCTTTCATGTGGAACCCCTTCGGTCAATTTGCAGTAACATCTCTTGCCACACCAATAGGTTGGTCGATGTATGCATATTGGTGACTAATAGATCCATGTCTCTCTTGGCTGAAAGATGCAATACGTCTCATGCTTTTATATGCATGGTTGATTTAGGGAACAGATGTTACCACATGCATTGCCACAGAGAATATCTTATTATCCTTGGAGTAGTAAGTGGGTTGATTCTCTTCACAACATTAGCTGTAGTGATTTGGCTTCTTGCATACAAGCGTAGCAAGAAGCGCAGACGTTCCCGCAAACTATCTAATCCAGCAGAAACTGCATTAGTCGCTCCATCATGGAAAGTCTTCATGAAAGACGAACTAAGGTCAATTACAAAGAACTTTAGTGAAGGAAACCGTCTTCTGGGAGATGCCAAGACAGGAGGCACGTACAGTGGAATTCTTCCTGATGGCTCAAGAGTGGCTGTTAAGAGGTTGAAGAGATCTAGTTTTCAAAGGAAAAAAGAGTTCTACTCTGAAATTGGAAGGGTTGCAAGGCTTCACCACCCAAATTTGGTGGCTGTGAAAGGCTGCTGTTATGATCGATCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_C Pkinase_Tyr

Protein Analysis

338

Amino Acids

38.01

Weight (kDa)

9.49

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_C	PF00059	72 - 187	2.5e-09	Lectin C-type domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52310 AT1G52310
fragaria_vesca	FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430 FvH4_1g29430
malus_domestica	MD12G1015200.v1.1 MD14G1013200.v1.1
prunus_persica	Prupe.7G025300_v2.0.a1 Prupe.7G025300_v2.0.a1
pyrus_communis	pycom12g01260 pycom14g01120
rosa_chinensis	RchiOBHm_Chr3g0495371
rosa_laevigata	RLG00000022627
rosa_multiflora	Rmu_sc0007953.1_g000006
rosa_roxburghii	Rroxscaffold_6G00390540
rosa_rugosa	Rorug03G0273100 Rorug03G0273200 Rorug03G0273300 Rorug03G0273400 Rorug03G0273500
rosa_samantha	Rh3AG321000 Rh3BG356000 Rh3CG352900 Rh3DG355300
rosa_wichuraiana	Rw3G028030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	102
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	1 cut(s)	501
AcsI	RAATTY	2 cut(s)	858, 970
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
AgsI	TTSAA	3 cut(s)	277, 898, 914
AluBI	AGCT	1 cut(s)	659
AluI	AGCT	1 cut(s)	659
Alw26I	GTCTC	3 cut(s)	417, 519, 546
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	2 cut(s)	330, 737
ApeKI	GCWGC	3 cut(s)	269, 330, 990
ApoI	RAATTY	2 cut(s)	858, 970
Asp700I	GAANNNNTTC	2 cut(s)	432, 764
AspLEI	GCGC	2 cut(s)	46, 702
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	508, 953
AvaII	GGWCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	757, 812
BbvI	GCAGC	3 cut(s)	281, 317, 977
BccI	CCATC	4 cut(s)	4, 159, 760, 863
BcoDI	GTCTC	3 cut(s)	417, 519, 546
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	1 cut(s)	660
BfuAI	ACCTGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	902
BisI	GCNGC	3 cut(s)	270, 331, 991
BlsI	GCNGC	3 cut(s)	271, 332, 992
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	521, 820
BpiI	GAAGAC	2 cut(s)	757, 812
BplI	GAGNNNNNCTC	2 cut(s)	917, 949
BpuEI	CTTGAG	2 cut(s)	270, 859
Bsa29I	ATCGAT	1 cut(s)	1003
BsaAI	YACGTR	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	221, 619
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 823, 973
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	592
BseCI	ATCGAT	1 cut(s)	1003
BseDI	CCNNGG	2 cut(s)	221, 619
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
BseMI	GCAATG	1 cut(s)	592
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	281, 317, 977
BseYI	CCCAGC	2 cut(s)	67, 333
BshVI	ATCGAT	1 cut(s)	1003
BslI	CCNNNNNNNGG	3 cut(s)	222, 823, 973
BsmAI	GTCTC	3 cut(s)	417, 519, 546
BsmBI	CGTCTC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	506, 902, 1000, 1004
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	1 cut(s)	712
BspDI	ATCGAT	1 cut(s)	1003
BspHI	TCATGA	1 cut(s)	768
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	501
BspTNI	GGTCTC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	221, 619
BssMI	GATC	4 cut(s)	506, 902, 1000, 1004
BssT1I	CCWWGG	2 cut(s)	221, 619
Bst4CI	ACNGT	2 cut(s)	818, 854
Bst6I	CTCTTC	2 cut(s)	650, 893
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	265, 782
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	46, 702
BstKTI	GATC	4 cut(s)	509, 905, 1003, 1007
BstMAI	GTCTC	3 cut(s)	417, 519, 546
BstMBI	GATC	4 cut(s)	506, 902, 1000, 1004
BstMWI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
BstNSI	RCATGY	2 cut(s)	78, 592
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	281, 317, 977
BstV2I	GAAGAC	2 cut(s)	757, 812
BstX2I	RGATCY	2 cut(s)	506, 902
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	2 cut(s)	506, 902
Bsu15I	ATCGAT	1 cut(s)	1003
BsuTUI	ATCGAT	1 cut(s)	1003
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	331, 859
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	2 cut(s)	330, 737
CciI	TCATGA	1 cut(s)	768
CfoI	GCGC	2 cut(s)	46, 702
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	1003
Csp6I	GTAC	1 cut(s)	850
CspCI	CAANNNNNGTGG	4 cut(s)	575, 610, 957, 992
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	2 cut(s)	265, 782
DpnI	GATC	4 cut(s)	508, 904, 1002, 1006
DpnII	GATC	4 cut(s)	506, 902, 1000, 1004
Eam1104I	CTCTTC	2 cut(s)	650, 893
EarI	CTCTTC	2 cut(s)	650, 893
Eco130I	CCWWGG	2 cut(s)	221, 619
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	858
EcoT14I	CCWWGG	2 cut(s)	221, 619
EcoT22I	ATGCAT	3 cut(s)	491, 560, 594
ErhI	CCWWGG	2 cut(s)	221, 619
Esp3I	CGTCTC	1 cut(s)	546
FauI	CCCGC	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	270, 331, 991
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	270, 331, 991
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	2 cut(s)	45, 701
GluI	GCNGC	3 cut(s)	270, 331, 991
GsaI	CCCAGC	2 cut(s)	71, 337
HhaI	GCGC	2 cut(s)	46, 702
Hin6I	GCGC	2 cut(s)	44, 700
HinP1I	GCGC	2 cut(s)	44, 700
HinfI	GANTC	6 cut(s)	19, 80, 106, 169, 230, 640
HphI	GGTGA	2 cut(s)	508, 953
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	5 cut(s)	24, 51, 235, 388, 937
Hpy188III	TCNNGA	5 cut(s)	129, 287, 769, 866, 876
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	4 cut(s)	8, 443, 803, 939
HpyCH4III	ACNGT	2 cut(s)	818, 854
HpyCH4IV	ACGT	4 cut(s)	296, 539, 706, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
HpyF3I	CTNAG	2 cut(s)	265, 782
HpySE526I	ACGT	4 cut(s)	296, 539, 706, 848
HspAI	GCGC	2 cut(s)	44, 700
Kzo9I	GATC	4 cut(s)	506, 902, 1000, 1004
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	3 cut(s)	281, 317, 977
LweI	GCATC	2 cut(s)	521, 820
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	4 cut(s)	296, 539, 706, 848
MaeIII	GTNAC	3 cut(s)	449, 496, 581
MalI	GATC	4 cut(s)	508, 904, 1002, 1006
MboI	GATC	4 cut(s)	506, 902, 1000, 1004
MboII	GAAGA	6 cut(s)	149, 637, 757, 812, 854, 910
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	2 cut(s)	506, 902
MluCI	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	6 cut(s)	57, 180, 335, 341, 836, 885
Mph1103I	ATGCAT	3 cut(s)	491, 560, 594
MroXI	GAANNNNTTC	2 cut(s)	432, 764
MseI	TTAA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	699, 737, 746
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	506, 902, 1000, 1004
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	3 cut(s)	491, 560, 594
NspI	RCATGY	2 cut(s)	78, 592
PaeI	GCATGC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	768
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	432, 764
PfeI	GAWTC	5 cut(s)	19, 80, 106, 169, 640
PkrI	GCNGC	3 cut(s)	271, 332, 992
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	255
PspFI	CCCAGC	2 cut(s)	67, 333
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	566, 598
PstNI	CAGNNNCTG	2 cut(s)	330, 737
PsuI	RGATCY	2 cut(s)	506, 902
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	888
SatI	GCNGC	3 cut(s)	270, 331, 991
Sau3AI	GATC	4 cut(s)	506, 902, 1000, 1004
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	239
SfaNI	GCATC	2 cut(s)	521, 820
SfcI	CTRYAG	1 cut(s)	660
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	285, 874
SmoI	CTYRAG	2 cut(s)	285, 874
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
SsiI	CCGC	1 cut(s)	712
SspMI	CTAG	1 cut(s)	906
StyI	CCWWGG	2 cut(s)	221, 619
TaaI	ACNGT	2 cut(s)	818, 854
TaiI	ACGT	4 cut(s)	299, 542, 709, 851
TaqI	TCGA	2 cut(s)	480, 1003
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	7 cut(s)	35, 379, 441, 789, 858, 939, 970
TfiI	GAWTC	5 cut(s)	19, 80, 106, 169, 640
Tru1I	TTAA	1 cut(s)	888
Tru9I	TTAA	1 cut(s)	888
TscAI	CASTG	2 cut(s)	331, 859
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	269, 330, 990
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	410, 757, 785
TspRI	CASTG	2 cut(s)	331, 859
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	858, 970
XceI	RCATGY	2 cut(s)	78, 592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmnI	GAANNNNTTC	2 cut(s)	432, 764
XspI	CTAG	1 cut(s)	906
Zsp2I	ATGCAT	3 cut(s)	491, 560, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.