pycom14g01530

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013142
Physical Location & Seq
Reverse (-)
1136767 .. 1138453
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGATGCAGACGGAACAGTCTCAGTCGGCGGCTCAGCCGCAGCAGCAGCAGCTGGTGGTGCAGAACTCCGCCGGAAGCCTCAGCTTCAACAGCAACATGTCGAAGGAGGACGAAGAGATGTCAAGGTCGGCGCTTTCCACTTTCAGAGCCAAAGAGGAGGAGATCGAGAGGAAGAAGATGGAGGTCAGAGAGAAGGTTCAGGCTCAGTTGGGTCGGGTTGAAGAGGAGACCAAGCGTTTGGCCACTATTCGTGAGGAGCTTGAAGGGCTTGCAGATCCGATGAGAAAGGAAGTTTCACAAGTTCGTAAGAAGATCGATTCGATTAACAAAGAGTTAAAGCCACTAGGGCATACCTGCCAGAAGAAGGAAAAGGAATACAGAGATGCACTCGAGGCTTTCAATGAAAAGAACAGGGAAAAAGTGCAGCTTATCACAAAGCTAATGGAGCTGGTTACCGAAAGTGAGAAGTTGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACGTAGATTTGTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

174

Amino Acids

20.14

Weight (kDa)

6.68

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 25 - 170 7.6e-76 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013142)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09980 AT3G52920 AT3G52920
fragaria_vesca FvH4_6g18110 FvH4_6g18110
malus_domestica MD14G1017400.v1.1
prunus_persica Prupe.7G115700_v2.0.a1
pyrus_communis pycom12g01910 pycom14g01530
rosa_chinensis RchiOBHm_Chr3g0472381
rosa_laevigata RLG00000024083
rosa_multiflora Rmu_sc0000798.1_g000012
rosa_roxburghii Rroxscaffold_6G00408970
rosa_rugosa Rorug03G0124400 Rorug03G0124400
rosa_samantha Rh3AG176900 Rh3DG172300
rosa_wichuraiana Rw3G016460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 362
AciI CCGC 3 cut(s) 29, 38, 69
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 88, 221, 263, 400
AluBI AGCT 8 cut(s) 52, 84, 259, 427, 439, 448, 484, 493
AluI AGCT 8 cut(s) 52, 84, 259, 427, 439, 448, 484, 493
Alw26I GTCTC 2 cut(s) 24, 221
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 5 cut(s) 40, 43, 46, 49, 424
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AspLEI GCGC 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 52, 55, 58, 61, 436
BccI CCATC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 24, 221
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 346
BisI GCNGC 7 cut(s) 30, 38, 41, 44, 47, 50, 425
BlpI GCTNAGC 2 cut(s) 33, 494
BlsI GCNGC 7 cut(s) 31, 39, 42, 45, 48, 51, 426
BmeT110I CYCGRG 1 cut(s) 389
BmsI GCATC 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 372, 404
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 80
Bpu1102I GCTNAGC 2 cut(s) 33, 494
Bsa29I ATCGAT 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 364
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 5 cut(s) 35, 47, 94, 218, 485
BseRI GAGGAG 5 cut(s) 170, 173, 239, 269, 503
BseXI GCAGC 5 cut(s) 52, 55, 58, 61, 436
BsgI GTGCAG 2 cut(s) 80, 443
BshFI GGCC 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 24, 221
BsnI GGCC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 389
Bsp143I GATC 3 cut(s) 162, 274, 312
Bsp1720I GCTNAGC 2 cut(s) 33, 494
BspACI CCGC 3 cut(s) 29, 38, 69
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 5 cut(s) 34, 46, 93, 217, 486
BspDI ATCGAT 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 221
BssMI GATC 3 cut(s) 162, 274, 312
Bst4CI ACNGT 2 cut(s) 18, 519
Bst6I CTCTTC 2 cut(s) 108, 216
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 5 cut(s) 21, 33, 80, 204, 494
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 1 cut(s) 480
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 3 cut(s) 165, 277, 315
BstMAI GTCTC 2 cut(s) 24, 221
BstMBI GATC 3 cut(s) 162, 274, 312
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 451
BstV1I GCAGC 5 cut(s) 52, 55, 58, 61, 436
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 315
BsuRI GGCC 1 cut(s) 242
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 480
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 1 cut(s) 133
ClaI ATCGAT 1 cut(s) 315
CviAII CATG 1 cut(s) 97
DdeI CTNAG 5 cut(s) 21, 33, 80, 204, 494
DpnI GATC 3 cut(s) 164, 276, 314
DpnII GATC 3 cut(s) 162, 274, 312
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 108, 216
EarI CTCTTC 2 cut(s) 108, 216
EciI GGCGGA 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 451
EcoO65I GGTNACC 1 cut(s) 451
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 351
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 30, 38, 41, 44, 47, 50, 425
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 7 cut(s) 30, 38, 41, 44, 47, 50, 425
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 132
GluI GCNGC 7 cut(s) 30, 38, 41, 44, 47, 50, 425
GsuI CTGGAG 1 cut(s) 506
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 146, 188, 279
Hpy188III TCNNGA 2 cut(s) 166, 251
HpyAV CCTTC 4 cut(s) 97, 187, 257, 358
HpyCH4III ACNGT 2 cut(s) 18, 519
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 5 cut(s) 7, 61, 272, 386, 424
HpyF3I CTNAG 5 cut(s) 21, 33, 80, 204, 494
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 3 cut(s) 162, 274, 312
LmnI GCTCC 3 cut(s) 256, 445, 490
LpnPI CCDG 8 cut(s) 38, 85, 185, 367, 371, 397, 434, 470
Lsp1109I GCAGC 5 cut(s) 52, 55, 58, 61, 436
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 2 cut(s) 451, 513
MalI GATC 3 cut(s) 164, 276, 314
MboI GATC 3 cut(s) 162, 274, 312
MboII GAAGA 7 cut(s) 125, 184, 187, 233, 322, 373, 490
MflI RGATCY 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 242
MluNI TGGCCA 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 2 cut(s) 324, 335
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 1 cut(s) 72
NdeII GATC 3 cut(s) 162, 274, 312
NlaIII CATG 1 cut(s) 100
NspI RCATGY 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 389
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 7 cut(s) 31, 39, 42, 45, 48, 51, 426
PscI ACATGT 1 cut(s) 96
PspEI GGTNACC 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 389
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 1 cut(s) 52
SaqAI TTAA 2 cut(s) 324, 335
SatI GCNGC 7 cut(s) 30, 38, 41, 44, 47, 50, 425
Sau3AI GATC 3 cut(s) 162, 274, 312
SfaNI GCATC 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SsiI CCGC 3 cut(s) 29, 38, 69
SspMI CTAG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 18, 519
TaiI ACGT 1 cut(s) 507
TaqI TCGA 5 cut(s) 101, 165, 315, 320, 390
TauI GCSGC 2 cut(s) 32, 40
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 324, 335
Tru9I TTAA 2 cut(s) 324, 335
TseI GCWGC 5 cut(s) 40, 43, 46, 49, 424
TspDTI ATGAA 2 cut(s) 417, 491
TspGWI ACGGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 389
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.