Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008232

Physical Location & Seq

Genomic Coordinates Forward (+)

6761565 .. 6761942

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGAGATAGGGATGATCGGACATGGAGTGCGATGATTAAAGTTTACGAACGGAAAGGTTTTGAAATGGAAGCCCTTGACTTGTTTGCTTTGATGCAAAGAGAAGATATAAGGCCGAATTTCCCTTCTTTGATAAGTGTTCTATCTGTTTGTGGCAGCTTGGCGAATCTTGATTATGGTAGACAGATTCATGCCCAGTTGGTGAGGAACCAGTTTGATCTTGATGTATATGTTGCTTCAGTATTGATGACAATGTATGTTAAATGTGGCAACCTTGTGAAGGCAAAACAGGTGTTTGACAGGTTTTCTGCAAAGGATATTGTTATGTGGAACTCAATGATCGATCACTGGTTATGCCCAACATGGTTTAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

126

Amino Acids

14.78

Weight (kDa)

8.5

Isoelectric Point (pI)

18.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09410 AT1G56690
fragaria_vesca	FvH4_6g08090 FvH4_6g08090
malus_domestica	MD08G1248600.v1.1 MD12G1084600.v1.1 MD12G1084700.v1.1 MD14G1079300.v1.1
prunus_persica	Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1 Prupe.7G064700_v2.0.a1
pyrus_communis	pycom12g07180 pycom14g06800
rosa_chinensis	RchiOBHm_Chr3g0457821 RchiOBHm_Chr3g0457911
rosa_laevigata	RLG00000025187
rosa_multiflora	Rmu_sc0012092.1_g000010 Rmu_ssc0000446.1_g000002
rosa_roxburghii	Rroxscaffold_6G00421480
rosa_rugosa	Rorug03G0023400
rosa_samantha	Rh3BG086500 Rh3DG087400
rosa_wichuraiana	Rw0G012310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	65
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	3 cut(s)	196, 211, 353
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseNI	ACTGG	3 cut(s)	196, 211, 353
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	280
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	16, 217, 339, 343
BspANI	GGCC	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	196, 211, 353
BssMI	GATC	4 cut(s)	16, 217, 339, 343
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	4 cut(s)	19, 220, 342, 346
BstMBI	GATC	4 cut(s)	16, 217, 339, 343
BstV1I	GCAGC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	342
CviAII	CATG	3 cut(s)	24, 191, 363
CviJI	RGCY	3 cut(s)	74, 115, 159
CviKI_1	RGCY	3 cut(s)	74, 115, 159
DpnI	GATC	4 cut(s)	18, 219, 341, 345
DpnII	GATC	4 cut(s)	16, 217, 339, 343
Eco57I	CTGAAG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	278
FaeI	CATG	3 cut(s)	27, 194, 366
FatI	CATG	3 cut(s)	23, 190, 362
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	27, 194, 366
HinfI	GANTC	2 cut(s)	166, 187
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	46, 182
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	170, 221
Hpy8I	GTNNAC	2 cut(s)	46, 182
HpyAV	CCTTC	2 cut(s)	135, 274
HpyCH4V	TGCA	2 cut(s)	97, 311
Hsp92II	CATG	3 cut(s)	27, 194, 366
Kzo9I	GATC	4 cut(s)	16, 217, 339, 343
LpnPI	CCDG	5 cut(s)	209, 224, 275, 286, 334
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	1 cut(s)	84
MalI	GATC	4 cut(s)	18, 219, 341, 345
MboI	GATC	4 cut(s)	16, 217, 339, 343
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	2 cut(s)	198, 366
MseI	TTAA	2 cut(s)	39, 261
NdeII	GATC	4 cut(s)	16, 217, 339, 343
NlaIII	CATG	3 cut(s)	27, 194, 366
NlaIV	GGNNCC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	166, 187
PkrI	GCNGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	39, 261
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	4 cut(s)	16, 217, 339, 343
SetI	ASST	6 cut(s)	61, 161, 276, 294, 305, 377
SfaNI	GCATC	1 cut(s)	84
Sse9I	AATT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	166, 187
Tru1I	TTAA	2 cut(s)	39, 261
Tru9I	TTAA	2 cut(s)	39, 261
TscAI	CASTG	1 cut(s)	353
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	353
XagI	CCTNNNNNAGG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.