Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009467

Physical Location & Seq

Genomic Coordinates Forward (+)

15162335 .. 15164046

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGAAGCTTGAGAAAAAGCTTGATCAGCCTCCACCGAGCTCTCAAATCCACCGCTTCCATCTCTCCCGCCGAAACCCATCTCAGGCCTCAATTCGGATACGGTTTGGTTCAGCGTTCTTATTCTGCTAACAATGGCAGCAATCTGGATATCGACCTCTCCAACCAAGAGAGCAAAAGGCGGTTGTTCAACAGGAGCAAGCAGAGAGGGTTTTTGGAGCTGGATTTGGTTCTGGGGAAGTGGGTGGAGGAGCATATACATTCCATGGATGAACAGGGAATTAAATCTCTTGTGGATGTCCTTGACCTGGAAAACCCAGATCTGTGGAAGTGGTTAAGTGGCCAGGAGCAACCCCCTGAAGCACTCCAAACTAATCCTGTTTTTACTGCAGTGCGCAACAATGGATCGATCATGAACAACCTGAACAGCTATGCCTCTCCCGAGACACGAGCAACACCTGGCCAGCCATGGGTTAGAGGGTGGGATGATATAAAGAAAAGCCAGGGTGGCCCTTTAACCGGGAACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016043 GO:0016310 GO:0016999 GO:0017144 GO:0018065 GO:0018293 GO:0019538 GO:0019637 GO:0019693 GO:0019752 GO:0022607 GO:0022900 GO:0022904 GO:0033108 GO:0034552 GO:0034553 GO:0034622 GO:0034641 GO:0036211 GO:0042773 GO:0042775 GO:0043170 GO:0043412 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0065003 GO:0071704 GO:0071840 GO:0072350 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sdh5

Protein Analysis

177

Amino Acids

19.72

Weight (kDa)

8.02

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sdh5	PF03937	60 - 133	4.2e-21	Flavinator of succinate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51040 AT5G51040 AT5G51040 AT5G51040
fragaria_vesca	FvH4_5g09730 FvH4_5g09730
malus_domestica	MD06G1128800.v1.1 MD14G1145800.v1.1
prunus_persica	Prupe.5G140100_v2.0.a1 Prupe.5G140100_v2.0.a1
pyrus_communis	pycom06g12040 pycom14g12080
rosa_chinensis	RchiOBHm_Chr7g0188501
rosa_laevigata	RLG00000004689
rosa_multiflora	Rmu_sc0001576.1_g000007 Rmu_sc0016427.1_g000005
rosa_rugosa	Rorug06G0491000
rosa_samantha	Rh7AG095600 Rh7BG097400 Rh7CG098200 Rh7DG097500
rosa_wichuraiana	Rw7G008260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AciI	CCGC	3 cut(s)	54, 69, 181
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	2 cut(s)	340, 460
AcuI	CTGAAG	1 cut(s)	378
AfiI	CCNNNNNNNGG	5 cut(s)	84, 95, 307, 469, 518
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	4 cut(s)	306, 342, 457, 501
AluBI	AGCT	5 cut(s)	9, 21, 41, 220, 429
AluI	AGCT	5 cut(s)	9, 21, 41, 220, 429
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	86, 340, 460, 508
ApeKI	GCWGC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	440
BalI	TGGCCA	2 cut(s)	342, 462
BanII	GRGCYC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	2 cut(s)	68, 87
BciT130I	CCWGG	4 cut(s)	308, 344, 459, 503
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	507
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	5 cut(s)	308, 344, 459, 503, 520
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	5 cut(s)	308, 344, 459, 503, 520
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	407
BsaJI	CCNNGG	3 cut(s)	264, 467, 502
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 95, 307, 469, 518
Bse1I	ACTGG	1 cut(s)	526
BseBI	CCWGG	4 cut(s)	308, 344, 459, 503
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	264, 467, 502
BseGI	GGATG	3 cut(s)	274, 301, 490
BseLI	CCNNNNNNNGG	5 cut(s)	84, 95, 307, 469, 518
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	4 cut(s)	88, 342, 462, 510
BshVI	ATCGAT	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	519
BslI	CCNNNNNNNGG	5 cut(s)	84, 95, 307, 469, 518
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	4 cut(s)	88, 342, 462, 510
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	24, 319, 404, 408
Bsp19I	CCATGG	2 cut(s)	264, 467
BspACI	CCGC	3 cut(s)	54, 69, 181
BspANI	GGCC	4 cut(s)	88, 342, 462, 510
BspCNI	CTCAG	1 cut(s)	96
BspDI	ATCGAT	1 cut(s)	407
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	524
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	264, 467, 502
BssMI	GATC	4 cut(s)	24, 319, 404, 408
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	2 cut(s)	264, 467
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	4 cut(s)	308, 344, 459, 503
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	200, 464
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	2 cut(s)	264, 467
BstF5I	GGATG	3 cut(s)	274, 301, 490
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	4 cut(s)	27, 322, 407, 411
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	4 cut(s)	24, 319, 404, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 507
BstNI	CCWGG	4 cut(s)	308, 344, 459, 503
BstSCI	CCNGG	5 cut(s)	306, 342, 457, 501, 518
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	4 cut(s)	88, 342, 462, 510
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	264, 467
BtsCI	GGATG	3 cut(s)	274, 301, 490
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	200, 464
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	407
CviAII	CATG	3 cut(s)	265, 412, 468
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	4 cut(s)	26, 321, 406, 410
DpnII	GATC	4 cut(s)	24, 319, 404, 408
EaeI	YGGCCR	2 cut(s)	340, 460
Ecl136II	GAGCTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	264, 467
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	41
EcoRII	CCWGG	4 cut(s)	306, 342, 457, 501
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	264, 467
EcoT38I	GRGCYC	1 cut(s)	43
ErhI	CCWWGG	2 cut(s)	264, 467
FaeI	CATG	3 cut(s)	268, 415, 471
FaiI	YATR	7 cut(s)	255, 257, 266, 413, 432, 469, 491
FatI	CATG	3 cut(s)	264, 411, 467
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	3 cut(s)	281, 308, 497
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	139
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	88, 342, 462, 510
HapII	CCGG	1 cut(s)	519
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	3 cut(s)	268, 415, 471
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	7, 19
HpaII	CCGG	1 cut(s)	519
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	146, 412, 440
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 507
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	268, 415, 471
HspAI	GCGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	24, 319, 404, 408
LmnI	GCTCC	4 cut(s)	195, 217, 250, 346
Lsp1109I	GCAGC	1 cut(s)	150
MalI	GATC	4 cut(s)	26, 321, 406, 410
MboI	GATC	4 cut(s)	24, 319, 404, 408
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	2 cut(s)	342, 462
MluCI	AATT	2 cut(s)	92, 279
MluNI	TGGCCA	2 cut(s)	342, 462
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	41, 99, 167, 200, 241, 445, 470
Mox20I	TGGCCA	2 cut(s)	342, 462
MscI	TGGCCA	2 cut(s)	342, 462
MseI	TTAA	3 cut(s)	282, 335, 515
Msp20I	TGGCCA	2 cut(s)	342, 462
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	5 cut(s)	308, 344, 459, 503, 520
MvaI	CCWGG	4 cut(s)	308, 344, 459, 503
MwoI	GCNNNNNNNGC	2 cut(s)	27, 507
NciI	CCSGG	1 cut(s)	520
NcoI	CCATGG	2 cut(s)	264, 467
NdeII	GATC	4 cut(s)	24, 319, 404, 408
NlaIII	CATG	3 cut(s)	268, 415, 471
NlaIV	GGNNCC	1 cut(s)	524
NsbI	TGCGCA	1 cut(s)	395
PagI	TCATGA	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	43
Psp6I	CCWGG	4 cut(s)	306, 342, 457, 501
PspGI	CCWGG	4 cut(s)	306, 342, 457, 501
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	282, 335, 515
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	4 cut(s)	24, 319, 404, 408
Sau96I	GGNCC	1 cut(s)	509
ScrFI	CCNGG	5 cut(s)	308, 344, 459, 503, 520
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	9 cut(s)	11, 23, 43, 159, 222, 309, 423, 431, 460
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	92, 279
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	3 cut(s)	54, 69, 181
SstI	GAGCTC	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	5 cut(s)	306, 342, 457, 501, 518
StyI	CCWWGG	2 cut(s)	264, 467
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	153, 407
TasI	AATT	2 cut(s)	92, 279
Tru1I	TTAA	3 cut(s)	282, 335, 515
Tru9I	TTAA	3 cut(s)	282, 335, 515
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	285, 428
TspRI	CASTG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.