pycom14g12720

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014930
Physical Location & Seq
Forward (+)
15736374 .. 15737261
888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGGATGTTATTAACAAGGTGCTCAATGTTACAATTCCTCCCATGTCCCTCGCCTTGTTGCTCTTCGTTCTGCCACCCTATCTCTTCTTCAAGCTTCTCCTCTCCGCCGCACAACATGTTTTTAGTGAAGATGTGGCCGGAAAAGTCATACTCATTACCGGAGCTTCCGCCGGCATATATAGGAGAGACGACCATCTGGCATATGAGTATGCTAGAAGAGGAGGTTGTCTAGCTCTTGTTGCCAGAAGAGAAAACCGACTACGTGACGTGGCCAACACAGCCGTTTGCTTTGGCTCCCCAGATGTTCTCGCAATCACTGCAGATGTTTCAAAGGTTGAAGATTGTAAGCACTGTGTTGATGTAACGGTGAATCATTTTGGACGTTGTAATCGATCACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

135

Amino Acids

14.7

Weight (kDa)

8.33

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 48 - 128 5.3e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 105, 108, 168
AcoI YGGCCR 2 cut(s) 135, 270
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 3 cut(s) 91, 330, 338
AjiI CACGTC 1 cut(s) 268
AluBI AGCT 3 cut(s) 94, 164, 233
AluI AGCT 3 cut(s) 94, 164, 233
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 2 cut(s) 135, 270
AsuHPI GGTGA 2 cut(s) 379, 387
BalI TGGCCA 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 3 cut(s) 213, 230, 399
BfmI CTRYAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse118I RCCGGY 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 391
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 89, 234
BshFI GGCC 2 cut(s) 137, 272
BshVI ATCGAT 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 3 cut(s) 138, 159, 171
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 180
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 2 cut(s) 137, 272
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 392
BspACI CCGC 3 cut(s) 105, 108, 168
BspANI GGCC 2 cut(s) 137, 272
BspDI ATCGAT 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 322
BspQI GCTCTTC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 353, 367
Bst6I CTCTTC 4 cut(s) 68, 89, 211, 241
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 395
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 392
BstMWI GCNNNNNNNGC 3 cut(s) 239, 278, 317
BstNSI RCATGY 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 391
BsuRI GGCC 2 cut(s) 137, 272
BsuTUI ATCGAT 1 cut(s) 391
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 349
Cac8I GCNNGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 391
CviAII CATG 2 cut(s) 43, 116
CviJI RGCY 7 cut(s) 94, 137, 164, 233, 272, 281, 294
CviKI_1 RGCY 7 cut(s) 94, 137, 164, 233, 272, 281, 294
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
EaeI YGGCCR 2 cut(s) 135, 270
Eam1104I CTCTTC 4 cut(s) 68, 89, 211, 241
EarI CTCTTC 4 cut(s) 68, 89, 211, 241
EciI GGCGGA 2 cut(s) 94, 157
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 2 cut(s) 46, 119
FaiI YATR 9 cut(s) 44, 117, 149, 176, 178, 180, 202, 204, 210
FaqI GGGAC 1 cut(s) 31
FatI CATG 2 cut(s) 42, 115
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 3 cut(s) 213, 230, 399
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 2 cut(s) 137, 272
HapII CCGG 3 cut(s) 138, 159, 171
Hin1II CATG 2 cut(s) 46, 119
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 370
HpaII CCGG 3 cut(s) 138, 159, 171
HphI GGTGA 2 cut(s) 379, 387
HpyCH4III ACNGT 2 cut(s) 353, 367
HpyCH4IV ACGT 3 cut(s) 262, 267, 382
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 278, 317
HpySE526I ACGT 3 cut(s) 262, 267, 382
Hsp92II CATG 2 cut(s) 46, 119
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 1 cut(s) 392
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 2 cut(s) 161, 299
LpnPI CCDG 6 cut(s) 151, 172, 182, 184, 256, 312
MaeI CTAG 3 cut(s) 213, 230, 399
MaeII ACGT 3 cut(s) 262, 267, 382
MaeIII GTNAC 3 cut(s) 28, 263, 361
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 7 cut(s) 55, 76, 79, 140, 228, 258, 350
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 272
MnlI CCTC 5 cut(s) 48, 59, 110, 212, 215
Mox20I TGGCCA 1 cut(s) 272
MroNI GCCGGC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 272
MseI TTAA 2 cut(s) 12, 403
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 3 cut(s) 138, 159, 171
MwoI GCNNNNNNNGC 3 cut(s) 239, 278, 317
NaeI GCCGGC 1 cut(s) 172
NdeI CATATG 1 cut(s) 202
NdeII GATC 1 cut(s) 392
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 2 cut(s) 46, 119
NlaIV GGNNCC 1 cut(s) 295
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 1 cut(s) 119
PciI ACATGT 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 263
PscI ACATGT 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 12, 403
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 392
SduI GDGCHC 1 cut(s) 24
SfcI CTRYAG 1 cut(s) 318
Sse9I AATT 1 cut(s) 33
SsiI CCGC 3 cut(s) 105, 108, 168
SspMI CTAG 3 cut(s) 213, 230, 399
TaaI ACNGT 2 cut(s) 353, 367
TaiI ACGT 3 cut(s) 265, 270, 385
TaqI TCGA 1 cut(s) 391
TasI AATT 1 cut(s) 33
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 2 cut(s) 12, 403
Tru9I TTAA 2 cut(s) 12, 403
TscAI CASTG 2 cut(s) 322, 356
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspRI CASTG 2 cut(s) 322, 356
XceI RCATGY 1 cut(s) 119
XspI CTAG 3 cut(s) 213, 230, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.