pycom14g12730

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014930
Physical Location & Seq
Forward (+)
15737594 .. 15738257
664 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGAACATGGCTACAAAAGCAGCAGCGATAGCCTTTTACGAGACGTTGAAAGTTGAAATTGGTAGGGAAGTTGGAATAACAATCGTGACTCCGGGAATGATTGAATCGGAAATTTCGCAAGGAAAATTCTTATCCAAGGAAGGCCAAGTGGTATTAGATCTAGAATTGAGAGATCTTGAAGTAAGCATAACACCGATCATGCCGGTGAAGGAGGCCGCCAAATCAATCGTGGACAGCGCATGCCGAGGAGAAAATTGTTTGACAGTACCAGCTTGGGTTTGGCAGTCATTTTACTGGAAGGTGTATTTCCCTGAGATGCTGGAGTGGTGTAACCGTACGCTTCTTATAAGTAAAGTGGGCAATGACGAGAGGGATACGCTGAGTAAGAAGCTCCTGTACCTAACTGGCCTGAAGCAGCATCTGTATGCAGAGATGGTTCGAGACCCTCATGTTAAAGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

5.48

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50770
fragaria_vesca FvH4_5g08730
malus_domestica MD14G1152800.v1.1
prunus_persica Prupe.5G147800_v2.0.a1
pyrus_communis pycom14g12720 pycom14g12730
rosa_chinensis RchiOBHm_Chr7g0189551
rosa_laevigata RLG00000004601
rosa_multiflora Rmu_sc0001924.1_g000012
rosa_roxburghii Rroxscaffold_3G00265310
rosa_rugosa Rorug06G0498900
rosa_samantha Rh7AG103900 Rh7BG106600 Rh7CG108700 Rh7DG106000
rosa_wichuraiana Rw7G008970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AciI CCGC 1 cut(s) 216
AcsI RAATTY 2 cut(s) 111, 125
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 3 cut(s) 267, 337, 398
AgsI TTSAA 4 cut(s) 49, 56, 104, 179
AluBI AGCT 2 cut(s) 272, 391
AluI AGCT 2 cut(s) 272, 391
Alw26I GTCTC 2 cut(s) 35, 435
AlwNI CAGNNNCTG 1 cut(s) 421
AoxI GGCC 3 cut(s) 142, 213, 406
ApeKI GCWGC 3 cut(s) 20, 23, 415
ApoI RAATTY 2 cut(s) 111, 125
AspLEI GCGC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbvI GCAGC 3 cut(s) 32, 35, 427
BccI CCATC 1 cut(s) 427
BciVI GTATCC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 35, 435
BfaI CTAG 1 cut(s) 161
BfuI GTATCC 1 cut(s) 367
BglII AGATCT 2 cut(s) 157, 172
BisI GCNGC 4 cut(s) 21, 24, 216, 416
BlsI GCNGC 4 cut(s) 22, 25, 217, 417
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 306, 427
BpmI CTGGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 135, 244
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 299, 409
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 2 cut(s) 135, 244
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 303, 371
BseNI ACTGG 2 cut(s) 299, 409
BseRI GAGGAG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 32, 35, 427
BshFI GGCC 3 cut(s) 144, 215, 408
BsiSI CCGG 2 cut(s) 92, 203
BsiWI CGTACG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 35, 435
BsmBI CGTCTC 1 cut(s) 35
BsnI GGCC 3 cut(s) 144, 215, 408
Bso31I GGTCTC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 157, 172, 195
BspACI CCGC 1 cut(s) 216
BspANI GGCC 3 cut(s) 144, 215, 408
BspCNI CTCAG 2 cut(s) 304, 372
BspTNI GGTCTC 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 2 cut(s) 299, 409
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 135, 244
BssMI GATC 3 cut(s) 157, 172, 195
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 265, 335
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 312, 380
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 160, 175, 198
BstMAI GTCTC 2 cut(s) 35, 435
BstMBI GATC 3 cut(s) 157, 172, 195
BstMWI GCNNNNNNNGC 2 cut(s) 17, 29
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 3 cut(s) 32, 35, 427
BstX2I RGATCY 2 cut(s) 157, 172
BstYI RGATCY 2 cut(s) 157, 172
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 144, 215, 408
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 421
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 202
Csp6I GTAC 3 cut(s) 266, 336, 397
CviAII CATG 4 cut(s) 7, 199, 240, 449
CviJI RGCY 7 cut(s) 11, 32, 144, 215, 272, 391, 408
CviKI_1 RGCY 7 cut(s) 11, 32, 144, 215, 272, 391, 408
CviQI GTAC 3 cut(s) 266, 336, 397
DdeI CTNAG 2 cut(s) 312, 380
DpnI GATC 3 cut(s) 159, 174, 197
DpnII GATC 3 cut(s) 157, 172, 195
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 431
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 4 cut(s) 10, 202, 243, 452
FaiI YATR 7 cut(s) 8, 188, 200, 241, 347, 426, 450
FatI CATG 4 cut(s) 6, 198, 239, 448
Fnu4HI GCNGC 4 cut(s) 21, 24, 216, 416
Fsp4HI GCNGC 4 cut(s) 21, 24, 216, 416
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 238
GluI GCNGC 4 cut(s) 21, 24, 216, 416
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 3 cut(s) 144, 215, 408
HapII CCGG 2 cut(s) 92, 203
HhaI GCGC 1 cut(s) 239
Hin1II CATG 4 cut(s) 10, 202, 243, 452
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 2 cut(s) 88, 104
HpaII CCGG 2 cut(s) 92, 203
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 4 cut(s) 85, 161, 176, 440
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 134, 202, 292
HpyCH4III ACNGT 2 cut(s) 265, 335
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 29
HpyF3I CTNAG 2 cut(s) 312, 380
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 4 cut(s) 10, 202, 243, 452
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 3 cut(s) 157, 172, 195
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 9 cut(s) 105, 216, 280, 282, 305, 324, 390, 407, 422
Lsp1109I GCAGC 3 cut(s) 32, 35, 427
LweI GCATC 2 cut(s) 306, 427
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 85, 329
MalI GATC 3 cut(s) 159, 174, 197
MboI GATC 3 cut(s) 157, 172, 195
MflI RGATCY 2 cut(s) 157, 172
MluCI AATT 5 cut(s) 57, 111, 125, 164, 253
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 4 cut(s) 205, 239, 363, 456
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 2 cut(s) 203, 423
MspI CCGG 2 cut(s) 92, 203
MspR9I CCNGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 17, 29
NciI CCSGG 1 cut(s) 93
NdeII GATC 3 cut(s) 157, 172, 195
NlaIII CATG 4 cut(s) 10, 202, 243, 452
NmeAIII GCCGAG 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 243
PaeI GCATGC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 104
Pfl23II CGTACG 1 cut(s) 335
PfoI TCCNGGA 1 cut(s) 91
PkrI GCNGC 4 cut(s) 22, 25, 217, 417
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 347
PspLI CGTACG 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 2 cut(s) 157, 172
RsaI GTAC 3 cut(s) 267, 337, 398
RsaNI GTAC 3 cut(s) 266, 336, 397
RseI CAYNNNNRTG 2 cut(s) 203, 423
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 4 cut(s) 21, 24, 216, 416
Sau3AI GATC 3 cut(s) 157, 172, 195
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 93
SetI ASST 5 cut(s) 47, 274, 303, 393, 402
SfaNI GCATC 2 cut(s) 306, 427
SmiMI CAYNNNNRTG 2 cut(s) 203, 423
SphI GCATGC 1 cut(s) 243
Sse9I AATT 5 cut(s) 57, 111, 125, 164, 253
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 265, 335
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 439
TasI AATT 5 cut(s) 57, 111, 125, 164, 253
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 20, 23, 415
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 111, 125
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 2 cut(s) 226, 276
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.