pycom14g12940

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
15964349 .. 15967858
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1647 bp
ATGGCTAGTCAAGGCGGTTCTTCGAGGAGAAGTCTGTCATTGACGAACACATCGTTGCAGGACAAGAAGAAACCCTCTGATGCTAGTAACGGAGGCCCTGATTCTGCCGGAAAATCTTTCACAGCTTCTCGTTCAATGGGGCTAACTGGAGAGCGTACAGTGAAACGGTTGCGGCTATCAAAGGCTCTGACGGTACCTGAAAATACCAGTGTTCAAGAAGCTTGTCGTCGGATGGCTGCTCGTAGAGTCGATGCTTTGTTGTTGACGGACTCTAATGCATTGTTATGTGGAATACTTACGGACAAGGATATAGCGACAAGGGTTATTTCTCGTGAGCTTGATCTTGAAGAAACCCTTGTTTCTAAAGTTATGACAAGGAACCCAATATTTGTTCTTTCAGACACTCTTGCTGTTGAGGCCCTTCAGAAAATGGTGCAAGGGAAATTCAGACATTTGCCTGTTGTGGAGAATGGAGAGGTCATTGCTTTACTTGATATAGCAAAGTGTTTATATGATGCCATTGCTCGAATGGAAAGAGCAGCTGAAAAGGGAAAGGCTATTGCTGCTGCTGTGGAAGGTGTTGAAAAACATTGGGGCACATCTAGCTCTGATGCAGGTTCCAATACATTCGTTGAGACACTTCGAGAGCGTTTGTTTAGACCATCCTTGTCAACAATCATTCTGGAGAGTACAAAGGTTTTAATAGTTTCACCAACAGATACAGTTTTGATGACAACAAAGAAGATGCAGGAAATGCGAGTAAGCTCAGCAGTCGTGACAATTGACAACAAGCCAAGAGGAATTCTTACCTCAAAAGATATCTTAATGCGCGTAATATCACAAAATCTTCCTCCGAAGACCACTCTTGTAGAGAAGGTCATGACTCCAAATCCAGAATGTGCTACAGTTGATACACCAATCCTCGATGCGTTGCATACCATGCATGATGGAAAGTTTTTACACATTCCTGTTCTCGACAGAGATGGAGCTGTAGTTGCCGTTGTTGATGTACTTCATATCACTCATGCTGCTGTGGCCACTGTTGGAAATACTGCTGGAGTGAGTAATGAGGCCGCAACCAATATGATGCAAAAGTTTTGGGATTCTGCCATGGCCTTGAGTCCCAATGATGATGACGATGAGTCTCGGAGTGAAAATTCGTTGAAACTGGCTTCTGAGAGCGCAGTGACAGGGAGATCACTTCCCTTTCCGCTGTCCAATTTTCCAAATACGTTTGCTTTCAAACTTCAAGATAAAAGGGGTCGAATGCATAGATTCACTTGCAATATTCAGAATTTGACAGAACTTATAACCTCCATCATTCAGAGAATGGGAGATGACATTGACCGCAACAACCTTCCTCAAATTTTGTATGAAGATGAAGACCGTGATAAAGTTATATTGGCATCAGATAGTGATCTTGTAGCGTCTGTGGATCATGCAAAGCAAGTTGGTTGGAAGGGTTTGAGACTGCATTTGGATTATTCAGGAACACGCAGTCGCCAGCGAAGGGGTTCAGCTGCAGGAAATGTGGATTATGCATATGCAGATTCTGCATGGGCATCAGCATACAATGCTGCGGCAGCTGGGGCTGCTCTTGCTGTTGGCTTAGGCGTTTTAGCGTACCTGAAGAGATCCGGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

59.47

Weight (kDa)

8.15

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 60 - 107 6.2e-08 CBS domain
CBS PF00571 120 - 164 1e-08 CBS domain
CBS PF00571 230 - 278 3.4e-06 CBS domain
CBS PF00571 290 - 343 8.4e-08 CBS domain
PB1 PF00564 411 - 494 2.2e-14 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1310
Acc36I ACCTGC 1 cut(s) 605
Acc65I GGTACC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 1 cut(s) 831
AciI CCGC 6 cut(s) 15, 172, 1074, 1211, 1348, 1580
AclWI GGATC 2 cut(s) 1443, 1629
AcoI YGGCCR 1 cut(s) 1035
AcsI RAATTY 5 cut(s) 443, 801, 1156, 1294, 1365
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 5 cut(s) 157, 195, 691, 1011, 1625
AfiI CCNNNNNNNGG 1 cut(s) 1510
AgsI TTSAA 7 cut(s) 135, 215, 347, 584, 1165, 1243, 1250
AhdI GACNNNNNGTC 1 cut(s) 1141
AluBI AGCT 9 cut(s) 125, 221, 337, 542, 606, 765, 989, 1520, 1586
AluI AGCT 9 cut(s) 125, 221, 337, 542, 606, 765, 989, 1520, 1586
Alw26I GTCTC 3 cut(s) 629, 1149, 1462
AlwI GGATC 2 cut(s) 1443, 1629
AlwNI CAGNNNCTG 1 cut(s) 1553
AoxI GGCC 5 cut(s) 94, 417, 1035, 1071, 1113
ApeKI GCWGC 9 cut(s) 236, 539, 563, 566, 1028, 1520, 1577, 1583, 1592
ApoI RAATTY 5 cut(s) 443, 801, 1156, 1294, 1365
Asp700I GAANNNNTTC 1 cut(s) 1513
Asp718I GGTACC 1 cut(s) 193
AspLEI GCGC 2 cut(s) 831, 1184
AspS9I GGNCC 2 cut(s) 95, 418
AsuHPI GGTGA 1 cut(s) 702
BaeGI GKGCMC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 863, 1389
BbvI GCAGC 9 cut(s) 223, 550, 551, 553, 1015, 1507, 1564, 1579, 1595
BccI CCATC 5 cut(s) 226, 670, 941, 977, 1325
BceAI ACGGC 1 cut(s) 983
BcoDI GTCTC 3 cut(s) 629, 1149, 1462
BfaI CTAG 3 cut(s) 6, 84, 603
BfmI CTRYAG 3 cut(s) 903, 990, 1521
BfuAI ACCTGC 1 cut(s) 605
BlpI GCTNAGC 1 cut(s) 766
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmgT120I GGNCC 2 cut(s) 95, 418
BmiI GGNNCC 3 cut(s) 195, 380, 619
BmsI GCATC 9 cut(s) 70, 241, 505, 601, 735, 916, 1077, 1415, 1571
BpiI GAAGAC 2 cut(s) 863, 1389
BpmI CTGGAG 3 cut(s) 168, 704, 1077
Bpu10I CCTNAGC 1 cut(s) 1609
Bpu1102I GCTNAGC 1 cut(s) 766
BpuEI CTTGAG 1 cut(s) 1138
BsaBI GATNNNNATC 1 cut(s) 1416
BsaJI CCNNGG 1 cut(s) 1110
BsaWI WCCGGW 1 cut(s) 1637
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 1 cut(s) 1510
Bse1I ACTGG 3 cut(s) 151, 207, 1173
Bse3DI GCAATG 2 cut(s) 480, 519
Bse8I GATNNNNATC 1 cut(s) 1416
BseDI CCNNGG 1 cut(s) 1110
BseGI GGATG 2 cut(s) 237, 662
BseJI GATNNNNATC 1 cut(s) 1416
BseLI CCNNNNNNNGG 1 cut(s) 1510
BseMI GCAATG 2 cut(s) 480, 519
BseMII CTCAG 2 cut(s) 780, 1167
BseNI ACTGG 3 cut(s) 151, 207, 1173
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 9 cut(s) 223, 550, 551, 553, 1015, 1507, 1564, 1579, 1595
BseYI CCCAGC 1 cut(s) 1586
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 5 cut(s) 96, 419, 1037, 1073, 1115
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 108, 1638
BslFI GGGAC 1 cut(s) 1107
BslI CCNNNNNNNGG 1 cut(s) 1510
BsmAI GTCTC 3 cut(s) 629, 1149, 1462
BsmFI GGGAC 1 cut(s) 1107
BsmI GAATGC 1 cut(s) 1272
BsnI GGCC 5 cut(s) 96, 419, 1037, 1073, 1115
Bsp1286I GDGCHC 1 cut(s) 599
Bsp143I GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
Bsp1720I GCTNAGC 1 cut(s) 766
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 6 cut(s) 15, 172, 1074, 1211, 1348, 1580
BspANI GGCC 5 cut(s) 96, 419, 1037, 1073, 1115
BspCNI CTCAG 2 cut(s) 779, 1168
BspFNI CGCG 1 cut(s) 831
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 3 cut(s) 195, 380, 619
BspMAI CTGCAG 1 cut(s) 1525
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 1443, 1629
BspT107I GGYRCC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 480, 519
BsrI ACTGG 3 cut(s) 151, 207, 1173
BssECI CCNNGG 1 cut(s) 1110
BssMI GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 1110
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 7 cut(s) 160, 168, 193, 724, 907, 1042, 1388
Bst6I CTCTTC 1 cut(s) 1625
BstAPI GCANNNNNTGC 4 cut(s) 754, 940, 1553, 1574
BstC8I GCNNGC 1 cut(s) 1505
BstDEI CTNAG 3 cut(s) 766, 1176, 1609
BstDSI CCRYGG 1 cut(s) 1110
BstF5I GGATG 2 cut(s) 237, 662
BstFNI CGCG 1 cut(s) 831
BstHHI GCGC 2 cut(s) 831, 1184
BstKTI GATC 5 cut(s) 343, 1199, 1420, 1438, 1637
BstMAI GTCTC 3 cut(s) 629, 1149, 1462
BstMBI GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
BstSFI CTRYAG 3 cut(s) 903, 990, 1521
BstSLI GKGCMC 1 cut(s) 599
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 9 cut(s) 223, 550, 551, 553, 1015, 1507, 1564, 1579, 1595
BstV2I GAAGAC 2 cut(s) 863, 1389
BstX2I RGATCY 1 cut(s) 1634
BstYI RGATCY 1 cut(s) 1634
BsuRI GGCC 5 cut(s) 96, 419, 1037, 1073, 1115
BtgI CCRYGG 1 cut(s) 1110
BtsCI GGATG 2 cut(s) 237, 662
BtsI GCAGTG 1 cut(s) 1191
BtsIMutI CAGTG 4 cut(s) 165, 214, 1038, 1191
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 1505
CaiI CAGNNNCTG 1 cut(s) 1553
CciI TCATGA 1 cut(s) 879
CfoI GCGC 2 cut(s) 831, 1184
Cfr13I GGNCC 2 cut(s) 95, 418
CseI GACGC 1 cut(s) 1416
Csp6I GTAC 5 cut(s) 156, 194, 690, 1010, 1624
CviAII CATG 7 cut(s) 880, 940, 944, 1025, 1111, 1439, 1557
CviQI GTAC 5 cut(s) 156, 194, 690, 1010, 1624
DdeI CTNAG 3 cut(s) 766, 1176, 1609
DpnI GATC 5 cut(s) 342, 1198, 1419, 1437, 1636
DpnII GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
DriI GACNNNNNGTC 1 cut(s) 1141
EaeI YGGCCR 1 cut(s) 1035
Eam1104I CTCTTC 1 cut(s) 1625
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EarI CTCTTC 1 cut(s) 1625
Eco130I CCWWGG 1 cut(s) 1110
Eco32I GATATC 1 cut(s) 820
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 2 cut(s) 95, 418
EcoRI GAATTC 1 cut(s) 801
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 1 cut(s) 1110
EcoT22I ATGCAT 4 cut(s) 280, 945, 1272, 1543
ErhI CCWWGG 1 cut(s) 1110
FaeI CATG 7 cut(s) 883, 943, 947, 1028, 1114, 1442, 1560
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 1107
FatI CATG 7 cut(s) 879, 939, 943, 1024, 1110, 1438, 1556
FauNDI CATATG 1 cut(s) 1543
FokI GGATG 2 cut(s) 244, 649
FspBI CTAG 3 cut(s) 6, 84, 603
GlaI GCGC 2 cut(s) 830, 1183
GsaI CCCAGC 1 cut(s) 1590
GsuI CTGGAG 3 cut(s) 168, 704, 1077
HaeIII GGCC 5 cut(s) 96, 419, 1037, 1073, 1115
HapII CCGG 2 cut(s) 108, 1638
HgaI GACGC 1 cut(s) 1416
HhaI GCGC 2 cut(s) 831, 1184
Hin1II CATG 7 cut(s) 883, 943, 947, 1028, 1114, 1442, 1560
Hin6I GCGC 2 cut(s) 829, 1182
HinP1I GCGC 2 cut(s) 829, 1182
HincII GTYRAC 2 cut(s) 264, 672
HindII GTYRAC 2 cut(s) 264, 672
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 9 cut(s) 101, 246, 269, 883, 1103, 1120, 1142, 1275, 1550
HpaII CCGG 2 cut(s) 108, 1638
HphI GGTGA 1 cut(s) 702
Hpy166II GTNNAC 2 cut(s) 264, 672
Hpy8I GTNNAC 2 cut(s) 264, 672
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 6 cut(s) 431, 569, 868, 1367, 1453, 1503
HpyCH4III ACNGT 7 cut(s) 160, 168, 193, 724, 907, 1042, 1388
HpyCH4IV ACGT 1 cut(s) 1232
HpyF3I CTNAG 3 cut(s) 766, 1176, 1609
HpySE526I ACGT 1 cut(s) 1232
Hsp92II CATG 7 cut(s) 883, 943, 947, 1028, 1114, 1442, 1560
HspAI GCGC 2 cut(s) 829, 1182
KpnI GGTACC 1 cut(s) 197
Kzo9I GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
LmnI GCTCC 1 cut(s) 986
Lsp1109I GCAGC 9 cut(s) 223, 550, 551, 553, 1015, 1507, 1564, 1579, 1595
LweI GCATC 9 cut(s) 70, 241, 505, 601, 735, 916, 1077, 1415, 1571
MaeI CTAG 3 cut(s) 6, 84, 603
MaeII ACGT 1 cut(s) 1232
MaeIII GTNAC 4 cut(s) 86, 775, 1186, 1640
MalI GATC 5 cut(s) 342, 1198, 1419, 1437, 1636
MboI GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
MboII GAAGA 9 cut(s) 12, 79, 359, 754, 839, 868, 1388, 1394, 1642
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 1 cut(s) 1634
MhlI GDGCHC 1 cut(s) 599
MlsI TGGCCA 1 cut(s) 1037
MluCI AATT 7 cut(s) 443, 780, 801, 1156, 1219, 1294, 1365
MluNI TGGCCA 1 cut(s) 1037
MlyI GAGTC 5 cut(s) 255, 263, 877, 1129, 1151
MmeI TCCRAC 3 cut(s) 209, 1024, 1436
Mox20I TGGCCA 1 cut(s) 1037
Mph1103I ATGCAT 4 cut(s) 280, 945, 1272, 1543
MroXI GAANNNNTTC 1 cut(s) 1513
MscI TGGCCA 1 cut(s) 1037
MseI TTAA 2 cut(s) 701, 824
MslI CAYNNNNRTG 1 cut(s) 283
Msp20I TGGCCA 1 cut(s) 1037
MspA1I CMGCKG 4 cut(s) 542, 1213, 1520, 1586
MspI CCGG 2 cut(s) 108, 1638
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 1272
MvnI CGCG 1 cut(s) 831
NcoI CCATGG 1 cut(s) 1110
NdeI CATATG 1 cut(s) 1543
NdeII GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
NlaIII CATG 7 cut(s) 883, 943, 947, 1028, 1114, 1442, 1560
NlaIV GGNNCC 3 cut(s) 195, 380, 619
NmuCI GTSAC 2 cut(s) 775, 1186
NsiI ATGCAT 4 cut(s) 280, 945, 1272, 1543
PagI TCATGA 1 cut(s) 879
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PctI GAATGC 1 cut(s) 1272
PdmI GAANNNNTTC 1 cut(s) 1513
PfeI GAWTC 4 cut(s) 101, 1103, 1275, 1550
PleI GAGTC 5 cut(s) 254, 263, 877, 1128, 1150
PpsI GAGTC 5 cut(s) 254, 263, 877, 1128, 1150
PsiI TTATAA 1 cut(s) 1310
PspFI CCCAGC 1 cut(s) 1586
PspN4I GGNNCC 3 cut(s) 195, 380, 619
PspPI GGNCC 2 cut(s) 95, 418
PstI CTGCAG 1 cut(s) 1525
PstNI CAGNNNCTG 1 cut(s) 1553
PsuI RGATCY 1 cut(s) 1634
PvuII CAGCTG 3 cut(s) 542, 1520, 1586
RsaI GTAC 5 cut(s) 157, 195, 691, 1011, 1625
RsaNI GTAC 5 cut(s) 156, 194, 690, 1010, 1624
RseI CAYNNNNRTG 1 cut(s) 283
SaqAI TTAA 2 cut(s) 701, 824
Sau3AI GATC 5 cut(s) 340, 1196, 1417, 1435, 1634
Sau96I GGNCC 2 cut(s) 95, 418
SchI GAGTC 5 cut(s) 255, 263, 877, 1129, 1151
SduI GDGCHC 1 cut(s) 599
SfaNI GCATC 9 cut(s) 70, 241, 505, 601, 735, 916, 1077, 1415, 1571
SfcI CTRYAG 3 cut(s) 903, 990, 1521
SmiMI CAYNNNNRTG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
Sse9I AATT 7 cut(s) 443, 780, 801, 1156, 1219, 1294, 1365
SsiI CCGC 6 cut(s) 15, 172, 1074, 1211, 1348, 1580
SspI AATATT 2 cut(s) 387, 1288
SspMI CTAG 3 cut(s) 6, 84, 603
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 7 cut(s) 160, 168, 193, 724, 907, 1042, 1388
TaiI ACGT 1 cut(s) 1235
TaqI TCGA 7 cut(s) 23, 249, 526, 643, 924, 975, 1264
TasI AATT 7 cut(s) 443, 780, 801, 1156, 1219, 1294, 1365
TatI WGTACW 2 cut(s) 689, 1009
TauI GCSGC 3 cut(s) 175, 1076, 1583
TfiI GAWTC 4 cut(s) 101, 1103, 1275, 1550
Tru1I TTAA 2 cut(s) 701, 824
Tru9I TTAA 2 cut(s) 701, 824
TscAI CASTG 4 cut(s) 165, 214, 1045, 1191
TseFI GTSAC 2 cut(s) 775, 1186
TseI GCWGC 9 cut(s) 236, 539, 563, 566, 1028, 1520, 1577, 1583, 1592
Tsp45I GTSAC 2 cut(s) 775, 1186
TspDTI ATGAA 3 cut(s) 1004, 1389, 1395
TspGWI ACGGA 3 cut(s) 105, 281, 314
TspRI CASTG 4 cut(s) 165, 214, 1045, 1191
XapI RAATTY 5 cut(s) 443, 801, 1156, 1294, 1365
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 1513
XspI CTAG 3 cut(s) 6, 84, 603
Zsp2I ATGCAT 4 cut(s) 280, 945, 1272, 1543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.