Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008220

Physical Location & Seq

Genomic Coordinates Reverse (-)

18379473 .. 18383339

Gene Structure 3867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGAAGACGACGAAGGGAGGGAAGGTGATGAACCCTACGGACGCTTACCGGAAGGAGCTCCGGAAGAAGGAATTGAAACGGAATAAAAAAGAACGAAAGAAGGTGAGAGAGGTGGGGATCTTGAAGAAGGATCCCGATACTTTGAAAGAGCAGATTGATAAGCTGGAAATGATGAAGGCTGATGGCGCTCTTGACAAGGCAAGAAAACACAAGAAGAGGCAACTAGAGGATACACTTAACCTTGTTATAAAGAAGCAGAAGGAATATGTAGAGAAACAGAAAGAAAAGGGCGAGGTCCCAGTTATGTTCAGTCATTTGGGGCCGCCTAAAAGACGAAAGACTGCAGAAGAAGAGGAGAGAGCGAAGCATCCGATGCCTGAGGACTCAGTTTACTTCCATCCGACCCTGAATCCTACTGGTGCCCCACCACCTGGAAAGCCTCCAATGTTTAAATCGTCAATAGGACCAAGAATTCCCTTATCTGGTGCTTCGTCAAGTGGTGCTGCATCATCCTCTAAAATGGAGTCAGAGGACGCTGTACCTCTGGCTGAATCTGGTGACAATGGCCCTGGTGATGGCTCTGTCATACCTGAGTCCTTGCCGCTACCTCCTCCGCCTCCATTGCCGCCTAACCCTGCAGCTACAAACCCAGGTATCTCATTGCCGCCACCACCACCACCCCCACCTCCAGGACCCCTGCCTAAAGAGCAGATTTCTAATCACCCCCTACTTCCCCCTCCACCTTTTCAACAGTCCGCCCAGCCTCCTCCTCCTGGTATCAGCGGAAATGAGAAGGAACAAAATCAATCTTCATTGTCTGATCTAACCTCTAAGGACTCCACACAGGTGCATACCATGCTTCCTCCTCCTCCTCCTCCACCTCCAGGTTTACTGCCTAAGTCAACAAATAATCAGTCGGGAGGTGCAACATCTGACGCTGAAACCAATAATGCTCAACTTACCAAGGATTTTACTAACATGGTTCCACCACCTCTTCCTCCTCCTCCTCCTCCTCCAAGACAACAACCTCCAGTTCCTGGACCCACCCTTATTCCAAATTTACATCCTGATGTATTGCCCCCAGGTCCCCCGGGAATGATGGTCCCAATGGTCCCCAGGCCCCCATACGGTCCTCCCCCTGGACCTCCCCCAATGATGAGACCACCACTTCCACCTGGGCCTCCTCCTACTTATCAAGAAGATGATTATGCTGCTCGAGTGGCTGCCCATCAGAAACCTTCATATGTTAAATCTGCAGCATCTACTGTTGTGAAGAGGCCTCTGGCTCAGCACACTCCAGAACTTACATCCATGGTTCCTGCATCTGTTCGGGTAAGGAGAGAGATGGCCGCCCCAAAAGCAAAAGCAAAACCTTCACTCCCAACCACAGCAGCACCTACCCAGTCAGCAACTCCTCCTGTTAAACCAGAGTCAGCAAACTCGTCGTCAGCACCAAAAGGCAAGAGCATAGATGACTCGTATATGGCTTTCCTGGAGGACATGAAGGCGCTCGGAGCACTTGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map03040 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

NpwBP Wbp11

Protein Analysis

510

Amino Acids

54.37

Weight (kDa)

9.53

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62640 AT5G62640 AT5G62640
fragaria_vesca	FvH4_5g15820 FvH4_5g15820
malus_domestica	MD06G1185300.v1.1 MD14G1191200.v1.1
prunus_persica	Prupe.5G184200_v2.0.a1 Prupe.5G184200_v2.0.a1
pyrus_communis	pycom06g16480 pycom14g15930
rosa_chinensis	RchiOBHm_Chr7g0180271 RchiOBHm_Chr7g0180311
rosa_laevigata	RLG00000005278
rosa_multiflora	Rmu_co8238381.1_g000001 Rmu_ssc0000099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273000
rosa_rugosa	Rorug06G0431900
rosa_samantha	Rh7AG032500 Rh7CG034300 Rh7DG032700 Rh7DG033000
rosa_wichuraiana	Rw7G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	2 cut(s)	431, 1037
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	8 cut(s)	323, 602, 614, 626, 665, 756, 783, 1350
AclWI	GGATC	3 cut(s)	125, 125, 138
AcoI	YGGCCR	1 cut(s)	1347
AcsI	RAATTY	2 cut(s)	471, 1057
AfaI	GTAC	1 cut(s)	540
AgsI	TTSAA	5 cut(s)	76, 124, 145, 749, 1523
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	3 cut(s)	58, 163, 641
AluI	AGCT	3 cut(s)	58, 163, 641
Alw21I	GWGCWC	2 cut(s)	60, 1519
Alw26I	GTCTC	1 cut(s)	1153
AlwI	GGATC	3 cut(s)	125, 125, 138
AlwNI	CAGNNNCTG	1 cut(s)	1037
Ama87I	CYCGRG	2 cut(s)	1090, 1215
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	6 cut(s)	320, 565, 1118, 1178, 1277, 1347
ApeKI	GCWGC	6 cut(s)	503, 638, 1211, 1223, 1256, 1391
ApoI	RAATTY	2 cut(s)	471, 1057
ArsI	GACNNNNNNTTYG	4 cut(s)	899, 931, 1430, 1462
AspLEI	GCGC	2 cut(s)	188, 1510
AsuC2I	CCSGG	2 cut(s)	1091, 1092
AsuHPI	GGTGA	5 cut(s)	37, 115, 569, 584, 713
AvaI	CYCGRG	2 cut(s)	1090, 1215
AvaII	GGWCC	9 cut(s)	295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	637, 670
BamHI	GGATCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	60, 1519
BbvI	GCAGC	6 cut(s)	490, 650, 1198, 1210, 1268, 1403
BccI	CCATC	6 cut(s)	176, 405, 569, 1093, 1236, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	1425, 1459
BciVI	GTATCC	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	1091, 1092
BcoDI	GTCTC	1 cut(s)	1153
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	3 cut(s)	342, 636, 1254
BfoI	RGCGCY	2 cut(s)	189, 1511
BfuI	GTATCC	1 cut(s)	223
BlpI	GCTNAGC	1 cut(s)	1287
Bme18I	GGWCC	9 cut(s)	295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
BmeT110I	CYCGRG	2 cut(s)	1090, 1215
BmrI	ACTGGG	2 cut(s)	293, 1396
BmsI	GCATC	5 cut(s)	363, 376, 515, 1268, 1331
BmuI	ACTGGG	2 cut(s)	293, 1396
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	5 cut(s)	672, 867, 1014, 1281, 1514
Bpu1102I	GCTNAGC	1 cut(s)	1287
BpuMI	CCSGG	2 cut(s)	1091, 1092
BsaI	GGTCTC	1 cut(s)	1153
BsaWI	WCCGGW	2 cut(s)	48, 60
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 1362, 1392
Bse1I	ACTGG	4 cut(s)	299, 421, 1031, 1402
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	2 cut(s)	620, 659
BseAI	TCCGGA	1 cut(s)	60
BseGI	GGATG	5 cut(s)	367, 397, 509, 1063, 1307
BseMI	GCAATG	2 cut(s)	620, 659
BseMII	CTCAG	4 cut(s)	369, 399, 582, 1301
BseNI	ACTGG	4 cut(s)	299, 421, 1031, 1402
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	6 cut(s)	490, 650, 1198, 1210, 1268, 1403
BseYI	CCCAGC	1 cut(s)	759
BshFI	GGCC	6 cut(s)	322, 567, 1120, 1180, 1279, 1349
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	60, 1519
BsiHKCI	CYCGRG	2 cut(s)	1090, 1215
BsiSI	CCGG	3 cut(s)	49, 61, 1091
BslFI	GGGAC	4 cut(s)	281, 1071, 1088, 1097
BsmAI	GTCTC	1 cut(s)	1153
BsmFI	GGGAC	4 cut(s)	281, 1071, 1088, 1097
BsnI	GGCC	6 cut(s)	322, 567, 1120, 1180, 1279, 1349
Bso31I	GGTCTC	1 cut(s)	1153
BsoBI	CYCGRG	2 cut(s)	1090, 1215
Bsp1286I	GDGCHC	3 cut(s)	60, 424, 1519
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	117, 130, 820
Bsp1720I	GCTNAGC	1 cut(s)	1287
Bsp19I	CCATGG	1 cut(s)	1311
BspACI	CCGC	8 cut(s)	323, 602, 614, 626, 665, 756, 783, 1350
BspANI	GGCC	6 cut(s)	322, 567, 1120, 1180, 1279, 1349
BspCNI	CTCAG	4 cut(s)	370, 398, 583, 1300
BspEI	TCCGGA	1 cut(s)	60
BspMAI	CTGCAG	3 cut(s)	346, 640, 1258
BspPI	GGATC	3 cut(s)	125, 125, 138
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	1153
BsrDI	GCAATG	2 cut(s)	620, 659
BsrI	ACTGG	4 cut(s)	299, 421, 1031, 1402
BssMI	GATC	3 cut(s)	117, 130, 820
BssT1I	CCWWGG	2 cut(s)	963, 1311
Bst4CI	ACNGT	3 cut(s)	753, 1130, 1267
Bst6I	CTCTTC	4 cut(s)	209, 345, 999, 1268
BstAPI	GCANNNNNTGC	2 cut(s)	373, 856
BstDEI	CTNAG	6 cut(s)	378, 385, 591, 831, 897, 1287
BstDSI	CCRYGG	1 cut(s)	1311
BstF5I	GGATG	5 cut(s)	367, 397, 509, 1063, 1307
BstH2I	RGCGCY	2 cut(s)	189, 1511
BstHHI	GCGC	2 cut(s)	188, 1510
BstKTI	GATC	3 cut(s)	120, 133, 823
BstMAI	GTCTC	1 cut(s)	1153
BstMBI	GATC	3 cut(s)	117, 130, 820
BstMWI	GCNNNNNNNGC	8 cut(s)	185, 373, 622, 706, 856, 1220, 1358, 1514
BstSFI	CTRYAG	3 cut(s)	342, 636, 1254
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	6 cut(s)	490, 650, 1198, 1210, 1268, 1403
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	117, 130
BstYI	RGATCY	2 cut(s)	117, 130
Bsu36I	CCTNAGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	6 cut(s)	322, 567, 1120, 1180, 1279, 1349
BtgI	CCRYGG	1 cut(s)	1311
BtsCI	GGATG	5 cut(s)	367, 397, 509, 1063, 1307
CaiI	CAGNNNCTG	1 cut(s)	1037
CfoI	GCGC	2 cut(s)	188, 1510
Cfr9I	CCCGGG	1 cut(s)	1090
CseI	GACGC	3 cut(s)	50, 542, 944
Csp6I	GTAC	1 cut(s)	539
CviAII	CATG	4 cut(s)	856, 979, 1312, 1501
CviQI	GTAC	1 cut(s)	539
DdeI	CTNAG	6 cut(s)	378, 385, 591, 831, 897, 1287
DpnI	GATC	3 cut(s)	119, 132, 822
DpnII	GATC	3 cut(s)	117, 130, 820
DraI	TTTAAA	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	1347
Eam1104I	CTCTTC	4 cut(s)	209, 345, 999, 1268
EarI	CTCTTC	4 cut(s)	209, 345, 999, 1268
EciI	GGCGGA	2 cut(s)	603, 745
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	963, 1311
Eco147I	AGGCCT	1 cut(s)	1279
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	1153
Eco47I	GGWCC	9 cut(s)	295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
Eco53kI	GAGCTC	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	2 cut(s)	1090, 1215
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	4 cut(s)	295, 692, 1085, 1119
EcoRI	GAATTC	1 cut(s)	471
EcoT14I	CCWWGG	2 cut(s)	963, 1311
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	963, 1311
FaeI	CATG	4 cut(s)	859, 982, 1315, 1504
FaqI	GGGAC	4 cut(s)	281, 1071, 1088, 1097
FatI	CATG	4 cut(s)	855, 978, 1311, 1500
FauNDI	CATATG	1 cut(s)	1243
FokI	GGATG	5 cut(s)	354, 384, 496, 1050, 1294
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	2 cut(s)	187, 1509
GsaI	CCCAGC	1 cut(s)	763
GsuI	CTGGAG	5 cut(s)	672, 867, 1014, 1281, 1514
HaeII	RGCGCY	2 cut(s)	189, 1511
HaeIII	GGCC	6 cut(s)	322, 567, 1120, 1180, 1279, 1349
HapII	CCGG	3 cut(s)	49, 61, 1091
HgaI	GACGC	3 cut(s)	50, 542, 944
HhaI	GCGC	2 cut(s)	188, 1510
Hin1II	CATG	4 cut(s)	859, 982, 1315, 1504
Hin6I	GCGC	2 cut(s)	186, 1508
HinP1I	GCGC	2 cut(s)	186, 1508
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HinfI	GANTC	8 cut(s)	383, 409, 524, 551, 593, 836, 1430, 1475
HpaII	CCGG	3 cut(s)	49, 61, 1091
HphI	GGTGA	5 cut(s)	37, 115, 569, 584, 713
Hpy166II	GTNNAC	3 cut(s)	391, 890, 903
Hpy188I	TCNGA	7 cut(s)	372, 402, 529, 820, 934, 1233, 1514
Hpy188III	TCNNGA	8 cut(s)	61, 121, 134, 191, 918, 1067, 1196, 1298
Hpy8I	GTNNAC	3 cut(s)	391, 890, 903
Hpy99I	CGWCG	2 cut(s)	13, 1447
HpyCH4III	ACNGT	3 cut(s)	753, 1130, 1267
HpyCH4V	TGCA	7 cut(s)	344, 506, 638, 850, 926, 1256, 1322
HpyF10VI	GCNNNNNNNGC	8 cut(s)	185, 373, 622, 706, 856, 1220, 1358, 1514
HpyF3I	CTNAG	6 cut(s)	378, 385, 591, 831, 897, 1287
Hsp92II	CATG	4 cut(s)	859, 982, 1315, 1504
HspAI	GCGC	2 cut(s)	186, 1508
Kpn2I	TCCGGA	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	117, 130, 820
LmnI	GCTCC	3 cut(s)	55, 63, 1514
Lsp1109I	GCAGC	6 cut(s)	490, 650, 1198, 1210, 1268, 1403
LweI	GCATC	5 cut(s)	363, 376, 515, 1268, 1331
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	3 cut(s)	119, 132, 822
MboI	GATC	3 cut(s)	117, 130, 820
MflI	RGATCY	2 cut(s)	117, 130
MhlI	GDGCHC	3 cut(s)	60, 424, 1519
MluCI	AATT	3 cut(s)	71, 471, 1057
MlyI	GAGTC	6 cut(s)	377, 533, 602, 830, 1439, 1469
MmeI	TCCRAC	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	4 cut(s)	237, 450, 1248, 1422
MslI	CAYNNNNRTG	2 cut(s)	845, 1068
MspA1I	CMGCKG	1 cut(s)	783
MspI	CCGG	3 cut(s)	49, 61, 1091
MwoI	GCNNNNNNNGC	8 cut(s)	185, 373, 622, 706, 856, 1220, 1358, 1514
NciI	CCSGG	2 cut(s)	1091, 1092
NcoI	CCATGG	1 cut(s)	1311
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	3 cut(s)	117, 130, 820
NlaIII	CATG	4 cut(s)	859, 982, 1315, 1504
NmuCI	GTSAC	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	1215
PceI	AGGCCT	1 cut(s)	1279
PfeI	GAWTC	2 cut(s)	409, 551
PflMI	CCANNNNNTGG	2 cut(s)	431, 1037
PfoI	TCCNGGA	3 cut(s)	688, 1036, 1491
PleI	GAGTC	6 cut(s)	377, 532, 601, 830, 1438, 1469
PpsI	GAGTC	6 cut(s)	377, 532, 601, 830, 1438, 1469
PpuMI	RGGWCCY	3 cut(s)	295, 692, 1085
PsiI	TTATAA	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	60
Psp5II	RGGWCCY	3 cut(s)	295, 692, 1085
PspFI	CCCAGC	1 cut(s)	759
PspPPI	RGGWCCY	3 cut(s)	295, 692, 1085
PspXI	VCTCGAGB	1 cut(s)	1215
PstI	CTGCAG	3 cut(s)	346, 640, 1258
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	2 cut(s)	117, 130
RsaI	GTAC	1 cut(s)	540
RsaNI	GTAC	1 cut(s)	539
RseI	CAYNNNNRTG	2 cut(s)	845, 1068
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	237, 450, 1248, 1422
Sau3AI	GATC	3 cut(s)	117, 130, 820
SchI	GAGTC	6 cut(s)	377, 533, 602, 830, 1439, 1469
SduI	GDGCHC	3 cut(s)	60, 424, 1519
SfaNI	GCATC	5 cut(s)	363, 376, 515, 1268, 1331
SfcI	CTRYAG	3 cut(s)	342, 636, 1254
Sfr274I	CTCGAG	1 cut(s)	1215
SinI	GGWCC	9 cut(s)	295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
SlaI	CTCGAG	1 cut(s)	1215
SmaI	CCCGGG	1 cut(s)	1092
SmiMI	CAYNNNNRTG	2 cut(s)	845, 1068
SmlI	CTYRAG	1 cut(s)	1215
SmoI	CTYRAG	1 cut(s)	1215
Sse9I	AATT	3 cut(s)	71, 471, 1057
SseBI	AGGCCT	1 cut(s)	1279
SsiI	CCGC	8 cut(s)	323, 602, 614, 626, 665, 756, 783, 1350
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	1279
StyI	CCWWGG	2 cut(s)	963, 1311
TaaI	ACNGT	3 cut(s)	753, 1130, 1267
TaqI	TCGA	1 cut(s)	1216
TasI	AATT	3 cut(s)	71, 471, 1057
TauI	GCSGC	5 cut(s)	325, 604, 628, 667, 1352
TfiI	GAWTC	2 cut(s)	409, 551
Tru1I	TTAA	4 cut(s)	237, 450, 1248, 1422
Tru9I	TTAA	4 cut(s)	237, 450, 1248, 1422
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	6 cut(s)	503, 638, 1211, 1223, 1256, 1391
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	17, 44, 188, 801, 1230, 1517
TspGWI	ACGGA	2 cut(s)	53, 94
TspMI	CCCGGG	1 cut(s)	1090
Van91I	CCANNNNNTGG	2 cut(s)	431, 1037
VpaK11BI	GGWCC	9 cut(s)	295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
XapI	RAATTY	2 cut(s)	471, 1057
XhoI	CTCGAG	1 cut(s)	1215
XmaI	CCCGGG	1 cut(s)	1090
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.