Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008220

Physical Location & Seq

Genomic Coordinates Reverse (-)

2417689 .. 2422914

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG033000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAAAAGAGGAAGGAAGTTGAAGAGAAGGCAAAGGAGAAGGGTGAGACCCCGGTTATGTTCAGCCATTTGGGACCACCTAAAAGACGAACAACTGCTGAAGAAGAAGAAAGAGCAAAGCATCCGAAGCCTGAGGATTCTGTTTACTACCACCCAACCTTGAATCCTACTGGGGCCCCACCACCTGGAAAGCCTCCAATGTTTCAATCATCGATAGGGCCAAGAATTCCTTTATCTGCTGCTTCATCAAGTGGGGCTGCATCATCCACTGAGGATGGTATTTTGGCTGATCCTCTGCTCAATTCTGGTGATGGCTCCGTTCTACCGGAGTCTTTACCTCTACCTCCTCCGCCTCCATTGCCGCCCAACCCTGCAGCTGCAAACTCAGGTATCTCACTGCCACCACCTCCACCTCCTCCTCCTGGACCCCTGCCTCCTAAAGAGGAGATTGCTAATCGCACTCTACTTCCCCCTCCTCCACCTCTTCACCAGTCTGCACAGCCACCTCCACCTGGTATCAGTGGAAACGAGAGGGAGAACAATCAATCTCCATTTTCTGATCAACCACCTGCCAAGGATCTCGCACAGGTACTTCCTCCCCCTCCTGGTTTGCCTCCAAATTCAGCAAATACTCAATTTGAAGGTGCAACTTCTGATGCTGAAACCAATAATACTCTAGTGACCAGGGATCTTACTAAAATGGTTCCACCACCACCTCCTCCAAGACAACAACCTCCAGTGCCTGGACCCACCCTGATTCCAAATATACATCCTGATGTGTTACCTCCAGGTATCTCTCGTTTTCCTCCACCGCCACCTCCACCAGATATGCGGCCACCATTATCCGCTCCTGGACTTCCCAGTCGACCAGGTCCACCAGGCATGATGGTCCCAATGATTCCCAGGCCACCATATGGACCTCCCCCTGGACCTCCCCCAATGATGAGACCACCACTTCCACCTGGCCCCCCTCCTACATTTCAAGAAGATGACCATGCAGCCTACGGCGTGGCTGCTCATCATAAACCATCATATATTAAATCGGCAGCATCTACTGTTGTTAAGAGGCCTCTAGCTCAGCACACTCCAGAACTTACAGCCATGGTAAGTTGTTTCTCTTTCAGTAGCTATAATATGTGTCACCAGTCCCTTATGGTAGTAGCAGCATATATTGCATTGCAGGTTACTATAAGAAGTATTGCTTTCTGCATCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map03040 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

NpwBP Wbp11

Protein Analysis

405

Amino Acids

42.77

Weight (kDa)

7.16

Isoelectric Point (pI)

71.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62640 AT5G62640 AT5G62640
fragaria_vesca	FvH4_5g15820 FvH4_5g15820
malus_domestica	MD06G1185300.v1.1 MD14G1191200.v1.1
prunus_persica	Prupe.5G184200_v2.0.a1 Prupe.5G184200_v2.0.a1
pyrus_communis	pycom06g16480 pycom14g15930
rosa_chinensis	RchiOBHm_Chr7g0180271 RchiOBHm_Chr7g0180311
rosa_laevigata	RLG00000005278
rosa_multiflora	Rmu_co8238381.1_g000001 Rmu_ssc0000099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273000
rosa_rugosa	Rorug06G0431900
rosa_samantha	Rh7AG032500 Rh7CG034300 Rh7DG032700 Rh7DG033000
rosa_wichuraiana	Rw7G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
AasI	GACNNNNNNGTC	1 cut(s)	861
Acc36I	ACCTGC	2 cut(s)	577, 1171
AccB7I	CCANNNNNTGG	3 cut(s)	185, 743, 914
AccBSI	CCGCTC	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	865
AciI	CCGC	5 cut(s)	350, 362, 812, 832, 846
AclWI	GGATC	3 cut(s)	284, 585, 696
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	2 cut(s)	225, 619
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	7 cut(s)	185, 422, 512, 605, 743, 914, 926
AgsI	TTSAA	5 cut(s)	23, 163, 206, 641, 983
AluBI	AGCT	3 cut(s)	377, 1076, 1128
AluI	AGCT	3 cut(s)	377, 1076, 1128
Alw26I	GTCTC	2 cut(s)	41, 940
AlwI	GGATC	3 cut(s)	284, 585, 696
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	6 cut(s)	174, 218, 833, 905, 964, 1067
ApaI	GGGCCC	1 cut(s)	178
ApeKI	GCWGC	8 cut(s)	239, 257, 374, 377, 998, 1013, 1046, 1163
ApoI	RAATTY	2 cut(s)	225, 619
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	4 cut(s)	56, 320, 479, 1133
AvaII	GGWCC	7 cut(s)	74, 425, 746, 872, 889, 917, 929
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BanII	GRGCYC	1 cut(s)	178
BbvI	GCAGC	8 cut(s)	226, 244, 364, 386, 1000, 1010, 1058, 1175
BccI	CCATC	4 cut(s)	269, 305, 880, 1036
BceAI	ACGGC	1 cut(s)	1021
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	41, 940
BfaI	CTAG	2 cut(s)	677, 1073
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	2 cut(s)	577, 1171
BlpI	GCTNAGC	1 cut(s)	1077
Bme18I	GGWCC	7 cut(s)	74, 425, 746, 872, 889, 917, 929
BmrI	ACTGGG	2 cut(s)	180, 855
BmsI	GCATC	4 cut(s)	130, 269, 646, 1058
BmuI	ACTGGG	2 cut(s)	180, 855
BpmI	CTGGAG	3 cut(s)	720, 771, 1071
Bpu1102I	GCTNAGC	1 cut(s)	1077
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	212
BsaI	GGTCTC	2 cut(s)	41, 940
BsaJI	CCNNGG	6 cut(s)	51, 573, 684, 902, 925, 1101
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	7 cut(s)	185, 422, 512, 605, 743, 914, 926
Bse1I	ACTGG	5 cut(s)	175, 490, 737, 861, 1144
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	2 cut(s)	356, 1175
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	6 cut(s)	51, 573, 684, 902, 925, 1101
BseGI	GGATG	4 cut(s)	121, 263, 280, 769
BseLI	CCNNNNNNNGG	7 cut(s)	185, 422, 512, 605, 743, 914, 926
BseMI	GCAATG	2 cut(s)	356, 1175
BseMII	CTCAG	4 cut(s)	123, 261, 399, 1091
BseNI	ACTGG	5 cut(s)	175, 490, 737, 861, 1144
BseRI	GAGGAG	6 cut(s)	336, 405, 408, 458, 465, 708
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	8 cut(s)	226, 244, 364, 386, 1000, 1010, 1058, 1175
BsgI	GTGCAG	1 cut(s)	480
BshFI	GGCC	6 cut(s)	176, 220, 835, 907, 966, 1069
BshVI	ATCGAT	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	53, 326
BslFI	GGGAC	3 cut(s)	87, 875, 1132
BslI	CCNNNNNNNGG	7 cut(s)	185, 422, 512, 605, 743, 914, 926
BsmAI	GTCTC	2 cut(s)	41, 940
BsmFI	GGGAC	3 cut(s)	87, 875, 1132
BsnI	GGCC	6 cut(s)	176, 220, 835, 907, 966, 1069
Bso31I	GGTCTC	2 cut(s)	41, 940
Bsp120I	GGGCCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	289, 559, 577, 688
Bsp1720I	GCTNAGC	1 cut(s)	1077
Bsp19I	CCATGG	1 cut(s)	1101
BspACI	CCGC	5 cut(s)	350, 362, 812, 832, 846
BspANI	GGCC	6 cut(s)	176, 220, 835, 907, 966, 1069
BspCNI	CTCAG	4 cut(s)	124, 262, 398, 1090
BspDI	ATCGAT	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	2 cut(s)	577, 1171
BspPI	GGATC	3 cut(s)	284, 585, 696
BspTNI	GGTCTC	2 cut(s)	41, 940
BsrBI	CCGCTC	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	356, 1175
BsrI	ACTGG	5 cut(s)	175, 490, 737, 861, 1144
BssECI	CCNNGG	6 cut(s)	51, 573, 684, 902, 925, 1101
BssMI	GATC	4 cut(s)	289, 559, 577, 688
BssT1I	CCWWGG	2 cut(s)	573, 1101
Bst4CI	ACNGT	1 cut(s)	1057
Bst6I	CTCTTC	2 cut(s)	18, 489
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstDEI	CTNAG	4 cut(s)	132, 270, 385, 1077
BstDSI	CCRYGG	1 cut(s)	1101
BstF5I	GGATG	4 cut(s)	121, 263, 280, 769
BstKTI	GATC	4 cut(s)	292, 562, 580, 691
BstMAI	GTCTC	2 cut(s)	41, 940
BstMBI	GATC	4 cut(s)	289, 559, 577, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 358, 1172
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	8 cut(s)	226, 244, 364, 386, 1000, 1010, 1058, 1175
BstX2I	RGATCY	2 cut(s)	577, 688
BstYI	RGATCY	2 cut(s)	577, 688
Bsu15I	ATCGAT	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	6 cut(s)	176, 220, 835, 907, 966, 1069
BsuTUI	ATCGAT	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	1101
BtsCI	GGATG	4 cut(s)	121, 263, 280, 769
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	4 cut(s)	267, 395, 526, 744
BveI	ACCTGC	2 cut(s)	577, 1171
CaiI	CAGNNNCTG	1 cut(s)	743
ClaI	ATCGAT	1 cut(s)	212
CsiI	ACCWGGT	2 cut(s)	511, 868
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	3 cut(s)	883, 995, 1102
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	4 cut(s)	132, 270, 385, 1077
DpnI	GATC	4 cut(s)	291, 561, 579, 690
DpnII	GATC	4 cut(s)	289, 559, 577, 688
DrdI	GACNNNNNNGTC	1 cut(s)	861
DseDI	GACNNNNNNGTC	1 cut(s)	861
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	2 cut(s)	18, 489
EarI	CTCTTC	2 cut(s)	18, 489
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	573, 1101
Eco147I	AGGCCT	1 cut(s)	1069
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	2 cut(s)	41, 940
Eco47I	GGWCC	7 cut(s)	74, 425, 746, 872, 889, 917, 929
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	2 cut(s)	174, 175
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	573, 1101
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	573, 1101
FaeI	CATG	3 cut(s)	886, 998, 1105
FalI	AAGNNNNNCTT	4 cut(s)	214, 246, 1186, 1218
FaqI	GGGAC	3 cut(s)	87, 875, 1132
FatI	CATG	3 cut(s)	882, 994, 1101
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	865
FokI	GGATG	4 cut(s)	108, 250, 287, 756
FriOI	GRGCYC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	677, 1073
GsuI	CTGGAG	3 cut(s)	720, 771, 1071
HaeIII	GGCC	6 cut(s)	176, 220, 835, 907, 966, 1069
HapII	CCGG	2 cut(s)	53, 326
Hin1II	CATG	3 cut(s)	886, 998, 1105
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	5 cut(s)	137, 163, 329, 757, 898
HpaII	CCGG	2 cut(s)	53, 326
HphI	GGTGA	4 cut(s)	56, 320, 479, 1133
Hpy166II	GTNNAC	3 cut(s)	145, 866, 875
Hpy188I	TCNGA	3 cut(s)	126, 559, 655
Hpy188III	TCNNGA	3 cut(s)	773, 983, 1088
Hpy8I	GTNNAC	3 cut(s)	145, 866, 875
HpyAV	CCTTC	4 cut(s)	7, 22, 34, 635
HpyCH4III	ACNGT	1 cut(s)	1057
HpyCH4V	TGCA	9 cut(s)	260, 374, 380, 497, 647, 998, 1175, 1180, 1209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 358, 1172
HpyF3I	CTNAG	4 cut(s)	132, 270, 385, 1077
Hsp92II	CATG	3 cut(s)	886, 998, 1105
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	289, 559, 577, 688
LmnI	GCTCC	2 cut(s)	320, 853
Lsp1109I	GCAGC	8 cut(s)	226, 244, 364, 386, 1000, 1010, 1058, 1175
LweI	GCATC	4 cut(s)	130, 269, 646, 1058
MabI	ACCWGGT	2 cut(s)	511, 868
MaeI	CTAG	2 cut(s)	677, 1073
MaeIII	GTNAC	4 cut(s)	679, 780, 1139, 1183
MalI	GATC	4 cut(s)	291, 561, 579, 690
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	4 cut(s)	289, 559, 577, 688
MboII	GAAGA	6 cut(s)	35, 113, 116, 119, 476, 998
MflI	RGATCY	2 cut(s)	577, 688
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	5 cut(s)	225, 301, 619, 635, 1213
MlyI	GAGTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	1038, 1062
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	53, 326
MwoI	GCNNNNNNNGC	3 cut(s)	127, 358, 1172
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	1101
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	4 cut(s)	289, 559, 577, 688
NlaIII	CATG	3 cut(s)	886, 998, 1105
NmuCI	GTSAC	2 cut(s)	679, 1139
PaqCI	CACCTGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	1069
PfeI	GAWTC	4 cut(s)	137, 163, 757, 898
PflFI	GACNNNGTC	1 cut(s)	870
PflMI	CCANNNNNTGG	3 cut(s)	185, 743, 914
PfoI	TCCNGGA	2 cut(s)	421, 850
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspOMI	GGGCCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	577, 688
PsyI	GACNNNGTC	1 cut(s)	870
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	774
SalI	GTCGAC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	1038, 1062
Sau3AI	GATC	4 cut(s)	289, 559, 577, 688
SchI	GAGTC	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	178
SexAI	ACCWGGT	2 cut(s)	511, 868
SfaNI	GCATC	4 cut(s)	130, 269, 646, 1058
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	7 cut(s)	74, 425, 746, 872, 889, 917, 929
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	5 cut(s)	225, 301, 619, 635, 1213
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	5 cut(s)	350, 362, 812, 832, 846
SspMI	CTAG	2 cut(s)	677, 1073
StuI	AGGCCT	1 cut(s)	1069
StyI	CCWWGG	2 cut(s)	573, 1101
TaaI	ACNGT	1 cut(s)	1057
TaqI	TCGA	2 cut(s)	212, 865
TasI	AATT	5 cut(s)	225, 301, 619, 635, 1213
TauI	GCSGC	2 cut(s)	364, 835
TfiI	GAWTC	4 cut(s)	137, 163, 757, 898
Tru1I	TTAA	2 cut(s)	1038, 1062
Tru9I	TTAA	2 cut(s)	1038, 1062
TscAI	CASTG	4 cut(s)	274, 402, 526, 744
TseFI	GTSAC	2 cut(s)	679, 1139
TseI	GCWGC	8 cut(s)	239, 257, 374, 377, 998, 1013, 1046, 1163
Tsp45I	GTSAC	2 cut(s)	679, 1139
TspDTI	ATGAA	2 cut(s)	17, 234
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	4 cut(s)	274, 402, 526, 744
Tth111I	GACNNNGTC	1 cut(s)	870
Van91I	CCANNNNNTGG	3 cut(s)	185, 743, 914
VpaK11BI	GGWCC	7 cut(s)	74, 425, 746, 872, 889, 917, 929
XapI	RAATTY	2 cut(s)	225, 619
XmiI	GTMKAC	1 cut(s)	865
XspI	CTAG	2 cut(s)	677, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.