Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000099.1

Orthogroup ID

OG0008220

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3133

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgaagacgaccaagggaggtaaggtcatgaaccctacggacgcttatcgtaaggagctccgcaaaaaggaattgaaaaggaacaagaaagaaagaaagaaggtgagggaggtggggatcttgaagaaggatcctgagaccctgaaggagcagattgataagttgaataagcagaaggctgatggtgctctggacaaagcaagaaaacacaagaagaggcaactagaggatacacttaatcttgttatgaagaagaggaaggaagttgaagagaaggcaaaggagaagggtgagaccccggttatgttcagccatttgggaccacctaaaagacgaacaaccgctgaagaagaagaaagagcaaagcatccaaagcctgaggattctgtttactaccacccaaccttgaatcctactggggccccaccacctggaaagcctccaatgtttcaatcatcgatagggccaagaattcctttatctgctgcttcatcaagtggggctgcatcatccactgaggatggtattttggctgatcctctgctcaattctggtgatggctccgttctaccggagtctctacctctacctcctccgcctccattgccgcccaaccctgcagctgcaaactcaggtatctcactgccaccacctccacctcctcctcctggacccctgcctcctaaagaggagattgctaatcgcactctacttccccctcctccacctcttcaccagtctgcacagccacctccacctggtatcagtggaaacgagagggagaacaatcaatctccattttctgatcaaccacctgccaaggatctcacaccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map03040 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231

Pfam Domains

Protein Families

NpwBP Wbp11

Protein Analysis

278

Amino Acids

30.22

Weight (kDa)

9.64

Isoelectric Point (pI)

63.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62640 AT5G62640 AT5G62640
fragaria_vesca	FvH4_5g15820 FvH4_5g15820
malus_domestica	MD06G1185300.v1.1 MD14G1191200.v1.1
prunus_persica	Prupe.5G184200_v2.0.a1 Prupe.5G184200_v2.0.a1
pyrus_communis	pycom06g16480 pycom14g15930
rosa_chinensis	RchiOBHm_Chr7g0180271 RchiOBHm_Chr7g0180311
rosa_laevigata	RLG00000005278
rosa_multiflora	Rmu_co8238381.1_g000001 Rmu_ssc0000099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273000
rosa_rugosa	Rorug06G0431900
rosa_samantha	Rh7AG032500 Rh7CG034300 Rh7DG032700 Rh7DG033000
rosa_wichuraiana	Rw7G002700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	4 cut(s)	61, 342, 596, 608
AclWI	GGATC	5 cut(s)	125, 125, 138, 530, 831
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	2 cut(s)	164, 366
AfiI	CCNNNNNNNGG	4 cut(s)	67, 431, 668, 758
AgsI	TTSAA	6 cut(s)	76, 124, 166, 269, 409, 452
AjnI	CCWGG	3 cut(s)	430, 667, 757
AluBI	AGCT	2 cut(s)	58, 623
AluI	AGCT	2 cut(s)	58, 623
Alw21I	GWGCWC	2 cut(s)	60, 190
Alw26I	GTCTC	3 cut(s)	131, 287, 582
AlwI	GGATC	5 cut(s)	125, 125, 138, 530, 831
AoxI	GGCC	2 cut(s)	420, 464
ApaI	GGGCCC	1 cut(s)	424
ApeKI	GCWGC	4 cut(s)	485, 503, 620, 623
ApoI	RAATTY	1 cut(s)	471
AspS9I	GGNCC	5 cut(s)	320, 420, 421, 464, 671
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	4 cut(s)	115, 302, 566, 725
AvaII	GGWCC	2 cut(s)	320, 671
AxyI	CCTNAGG	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	424
BaeI	ACNNNNGTAYC	2 cut(s)	619, 652
BamHI	GGATCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	60, 424
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	60, 190
BbvI	GCAGC	4 cut(s)	472, 490, 610, 632
BccI	CCATC	3 cut(s)	176, 515, 551
BciT130I	CCWGG	3 cut(s)	432, 669, 759
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	131, 287, 582
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	823
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	486, 504, 608, 621, 624
BlsI	GCNGC	5 cut(s)	487, 505, 609, 622, 625
Bme1390I	CCNGG	4 cut(s)	299, 432, 669, 759
Bme18I	GGWCC	2 cut(s)	320, 671
BmgT120I	GGNCC	5 cut(s)	320, 420, 421, 464, 671
BmiI	GGNNCC	7 cut(s)	132, 321, 421, 422, 423, 562, 673
BmrFI	CCNGG	4 cut(s)	299, 432, 669, 759
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	376, 515
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	458
BsaI	GGTCTC	2 cut(s)	131, 287
BsaJI	CCNNGG	3 cut(s)	12, 297, 819
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 431, 668, 758
Bse1I	ACTGG	2 cut(s)	421, 736
Bse21I	CCTNAGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	3 cut(s)	432, 669, 759
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	3 cut(s)	12, 297, 819
BseGI	GGATG	3 cut(s)	367, 509, 526
BseLI	CCNNNNNNNGG	4 cut(s)	67, 431, 668, 758
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	4 cut(s)	126, 369, 507, 645
BseNI	ACTGG	2 cut(s)	421, 736
BseRI	GAGGAG	5 cut(s)	582, 651, 654, 704, 711
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	4 cut(s)	472, 490, 610, 632
BsgI	GTGCAG	1 cut(s)	726
BshFI	GGCC	2 cut(s)	422, 466
BshVI	ATCGAT	1 cut(s)	458
BsiHKAI	GWGCWC	2 cut(s)	60, 190
BsiSI	CCGG	2 cut(s)	299, 572
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	67, 431, 668, 758
BsmAI	GTCTC	3 cut(s)	131, 287, 582
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	422, 466
Bso31I	GGTCTC	2 cut(s)	131, 287
Bsp120I	GGGCCC	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	60, 190, 424
Bsp143I	GATC	5 cut(s)	117, 130, 535, 805, 823
BspACI	CCGC	4 cut(s)	61, 342, 596, 608
BspANI	GGCC	2 cut(s)	422, 466
BspCNI	CTCAG	4 cut(s)	127, 370, 508, 644
BspDI	ATCGAT	1 cut(s)	458
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	7 cut(s)	132, 321, 421, 422, 423, 562, 673
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	5 cut(s)	125, 125, 138, 530, 831
BspTNI	GGTCTC	2 cut(s)	131, 287
BsrDI	GCAATG	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	421, 736
BssECI	CCNNGG	3 cut(s)	12, 297, 819
BssMI	GATC	5 cut(s)	117, 130, 535, 805, 823
BssT1I	CCWWGG	2 cut(s)	12, 819
Bst2UI	CCWGG	3 cut(s)	432, 669, 759
Bst6I	CTCTTC	4 cut(s)	209, 248, 264, 735
BstDEI	CTNAG	4 cut(s)	135, 378, 516, 631
BstF5I	GGATG	3 cut(s)	367, 509, 526
BstKTI	GATC	5 cut(s)	120, 133, 538, 808, 826
BstMAI	GTCTC	3 cut(s)	131, 287, 582
BstMBI	GATC	5 cut(s)	117, 130, 535, 805, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 373, 604
BstNI	CCWGG	3 cut(s)	432, 669, 759
BstSCI	CCNGG	4 cut(s)	297, 430, 667, 757
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	472, 490, 610, 632
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	3 cut(s)	117, 130, 823
BstYI	RGATCY	3 cut(s)	117, 130, 823
Bsu15I	ATCGAT	1 cut(s)	458
Bsu36I	CCTNAGG	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	422, 466
BsuTUI	ATCGAT	1 cut(s)	458
BtsCI	GGATG	3 cut(s)	367, 509, 526
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	3 cut(s)	513, 641, 772
BveI	ACCTGC	1 cut(s)	823
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	5 cut(s)	320, 420, 421, 464, 671
ClaI	ATCGAT	1 cut(s)	458
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	757
CviAII	CATG	1 cut(s)	28
DdeI	CTNAG	4 cut(s)	135, 378, 516, 631
DpnI	GATC	5 cut(s)	119, 132, 537, 807, 825
DpnII	GATC	5 cut(s)	117, 130, 535, 805, 823
Eam1104I	CTCTTC	4 cut(s)	209, 248, 264, 735
EarI	CTCTTC	4 cut(s)	209, 248, 264, 735
EciI	GGCGGA	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	12, 819
Eco24I	GRGCYC	2 cut(s)	60, 424
Eco31I	GGTCTC	2 cut(s)	131, 287
Eco47I	GGWCC	2 cut(s)	320, 671
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	164, 366
Eco81I	CCTNAGG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	58
EcoO109I	RGGNCCY	2 cut(s)	420, 421
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	3 cut(s)	430, 667, 757
EcoT14I	CCWWGG	2 cut(s)	12, 819
EcoT38I	GRGCYC	2 cut(s)	60, 424
ErhI	CCWWGG	2 cut(s)	12, 819
FaeI	CATG	1 cut(s)	31
FaiI	YATR	3 cut(s)	29, 248, 305
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	486, 504, 608, 621, 624
FokI	GGATG	3 cut(s)	354, 496, 533
FriOI	GRGCYC	2 cut(s)	60, 424
Fsp4HI	GCNGC	5 cut(s)	486, 504, 608, 621, 624
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	5 cut(s)	486, 504, 608, 621, 624
HaeIII	GGCC	2 cut(s)	422, 466
HapII	CCGG	2 cut(s)	299, 572
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	3 cut(s)	383, 409, 575
HpaII	CCGG	2 cut(s)	299, 572
HphI	GGTGA	4 cut(s)	115, 302, 566, 725
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	805
Hpy188III	TCNNGA	4 cut(s)	28, 121, 134, 191
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	7 cut(s)	94, 121, 139, 169, 253, 268, 280
HpyCH4V	TGCA	4 cut(s)	506, 620, 626, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 373, 604
HpyF3I	CTNAG	4 cut(s)	135, 378, 516, 631
Hsp92II	CATG	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	5 cut(s)	117, 130, 535, 805, 823
LmnI	GCTCC	4 cut(s)	55, 63, 148, 566
Lsp1109I	GCAGC	4 cut(s)	472, 490, 610, 632
LweI	GCATC	2 cut(s)	376, 515
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	1 cut(s)	224
MalI	GATC	5 cut(s)	119, 132, 537, 807, 825
MboI	GATC	5 cut(s)	117, 130, 535, 805, 823
MflI	RGATCY	3 cut(s)	117, 130, 823
MhlI	GDGCHC	3 cut(s)	60, 190, 424
MluCI	AATT	3 cut(s)	71, 471, 547
MlyI	GAGTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	344, 623
MspI	CCGG	2 cut(s)	299, 572
MspR9I	CCNGG	4 cut(s)	299, 432, 669, 759
MvaI	CCWGG	3 cut(s)	432, 669, 759
MwoI	GCNNNNNNNGC	3 cut(s)	185, 373, 604
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	5 cut(s)	117, 130, 535, 805, 823
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	7 cut(s)	132, 321, 421, 422, 423, 562, 673
PagI	TCATGA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	823
PfeI	GAWTC	2 cut(s)	383, 409
PflMI	CCANNNNNTGG	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	667
PkrI	GCNGC	5 cut(s)	487, 505, 609, 622, 625
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
Psp124BI	GAGCTC	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	430, 667, 757
PspGI	CCWGG	3 cut(s)	430, 667, 757
PspN4I	GGNNCC	7 cut(s)	132, 321, 421, 422, 423, 562, 673
PspOMI	GGGCCC	1 cut(s)	420
PspPI	GGNCC	5 cut(s)	320, 420, 421, 464, 671
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	3 cut(s)	117, 130, 823
PvuII	CAGCTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	5 cut(s)	486, 504, 608, 621, 624
Sau3AI	GATC	5 cut(s)	117, 130, 535, 805, 823
Sau96I	GGNCC	5 cut(s)	320, 420, 421, 464, 671
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	4 cut(s)	299, 432, 669, 759
SduI	GDGCHC	3 cut(s)	60, 190, 424
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	2 cut(s)	376, 515
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	2 cut(s)	320, 671
Sse9I	AATT	3 cut(s)	71, 471, 547
SsiI	CCGC	4 cut(s)	61, 342, 596, 608
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	4 cut(s)	297, 430, 667, 757
StyI	CCWWGG	2 cut(s)	12, 819
TaqI	TCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	71, 471, 547
TauI	GCSGC	1 cut(s)	610
TfiI	GAWTC	2 cut(s)	383, 409
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	520, 648, 772
TseI	GCWGC	4 cut(s)	485, 503, 620, 623
TspDTI	ATGAA	4 cut(s)	17, 44, 263, 480
TspGWI	ACGGA	2 cut(s)	53, 553
TspRI	CASTG	3 cut(s)	520, 648, 772
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	320, 671
XapI	RAATTY	1 cut(s)	471
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.