Rw7G002700

WW domain binding protein 11

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
2223331 .. 2228086
4756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002700.1

Sequence Viewer

Length: 1578 bp
ATGAAGACGACCAAGGGAGGCAAGGTCATGAACCCTACGGACGCTTATCGTAAGGAGCTCCGCAAAAAGGAATTGAAAAGGAACAAGAAAGAAAGAAAGAAGGTGAGGGAGGTGGGGATCTTGAAGAAGGATCCTGAGACCCTGAAGGAGCAGATTGATAAGTTGAATAAGCAGAAGGCTGATGGTGCTCTGGACAAAGCAAGAAAACACAAGAAAAGGCAACTAGAGGATACACTTAATCTTGTTATGAAAAAGAGGAAGGAAGTTGAAGAGAAGGCAAAGGAGAAGGGTGAGACCCCGGTTATGTTCAGCCATTTGGGACCACCTAAAAGACGAACAACCGCTGAAGAAGAAGAAAGAGCAAAGCATCCGAAGCCTGAGGATTCTGTTTACTACCACCCAACCTTGAATCCTACTGGGGCCCCACCACCTGGAAAGCCTCCAATGTTTCAATCATCGATAGGGCCAAGAATTCCTTTATCTGCTGCTTCATCAAGTGGGGCTGCATCATCCACTGAGGATGGTATTTTGGCTGATCCTCTGCTCAATTCTGGTGATGGCTCCGTTCTACCGGAGTCTTTACCTCTACCTCCTCCGCCTCCATTGCCGCCCAACCCTGCAGCTGCAAACTCAGGTATCTCACTGCCACCACCTCCACCTCCTCCTCCTGGACCCCTGCCTCCTAAAGAGGAGATTGCTAATCGCACTCTACTTCCCCCTCCTCCACCTCTTCACCAGTCTGCACAGCCACCTCCACCTGGTATCAGTGGAAACGAGAGGGAGAACAATCAATCTCCATTTTCTGATCAACCACCTGCCAAGGATCTCGCACAGGTACTTCCTCCCCCTCCTGGTTTGCCTCCAAATTCAGCAAATACTCAATTTGAAGGTGCAACTTCTGATGCTGAAACCAATAATACTCTAGTGACCAGGGATCTTACTAAAATGGTTCCACCACCACCTCCTCCAAGACAACAACCTCCAGTGCCTGGACCCACCCTGATTCCAAATATACATCCTGATGTGTTACCTCCAGGTATCTCTCGTTTTCCTCCACCGCCACCTCCACCAGATATGCGGCCACCATTATCCGCACCTGGACTTCCCAGTCGACCAGGTCCACCAGGCATGATGGTCCCAATGATTCCCAGGCCACCATATGGACCTCCCCCTGGACCTCCCCCAATGATGAGACCACCACTTCCACCTGGCCCCCCTCCTACATTTCAAGAAGATGACCATGCAGCCTACGGCGTGGCTGCTCATCATAAACCATCATATATTAAATCGGCAGCATCTACTGTTGTTAAGAGGCCTCTAGCTCAGCACACTCCAGAACTTACAGCCATGGTTCCTGCATCTGTTCGGGTTAGGAGAGAGATGGCTGCCCCCAAAGCAAAAGCAAAAGCATCACTCCCAACATCACTCCCAACTACAGCAGCAGCTGCCCGGCCAGTAACTACTGTTGTGAAACCAGATTCAGCGAACTCATCGTCAGCACCAAAGGCAGGAAGCATTGATGACTCTTACATGGCCTTCCTGGAGGACATGAAGGCACTTGGTGCACTTGAAGGTTGA

Protein Analysis

525

Amino Acids

55.92

Weight (kDa)

9.67

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wbp11 PF09429 7 - 84 1.8e-22 WW domain binding protein 11
NpwBP PF12622 126 - 154 2.1e-10 mRNA biogenesis factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 823
AasI GACNNNNNNGTC 1 cut(s) 1107
Acc36I ACCTGC 1 cut(s) 823
AccB7I CCANNNNNTGG 3 cut(s) 431, 989, 1160
AccI GTMKAC 1 cut(s) 1111
AciI CCGC 7 cut(s) 61, 342, 596, 608, 1058, 1078, 1092
AclWI GGATC 6 cut(s) 125, 125, 138, 530, 831, 942
AcoI YGGCCR 2 cut(s) 1079, 1451
AcsI RAATTY 2 cut(s) 471, 865
AcuI CTGAAG 2 cut(s) 164, 366
AdeI CACNNNGTG 1 cut(s) 1562
AfaI GTAC 1 cut(s) 837
AfiI CCNNNNNNNGG 9 cut(s) 67, 431, 668, 758, 851, 989, 1160, 1172, 1508
AgsI TTSAA 9 cut(s) 76, 124, 166, 269, 409, 452, 887, 1229, 1571
AluBI AGCT 4 cut(s) 58, 623, 1322, 1445
AluI AGCT 4 cut(s) 58, 623, 1322, 1445
Alw21I GWGCWC 3 cut(s) 60, 190, 1567
Alw26I GTCTC 3 cut(s) 131, 287, 1186
Alw44I GTGCAC 1 cut(s) 1563
AlwI GGATC 6 cut(s) 125, 125, 138, 530, 831, 942
AlwNI CAGNNNCTG 2 cut(s) 989, 1445
AoxI GGCC 8 cut(s) 420, 464, 1079, 1151, 1210, 1313, 1451, 1533
ApaI GGGCCC 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 1563
ApoI RAATTY 2 cut(s) 471, 865
ArsI GACNNNNNNTTYG 2 cut(s) 1478, 1510
AsuC2I CCSGG 2 cut(s) 299, 1450
AsuHPI GGTGA 4 cut(s) 115, 302, 566, 725
AvaII GGWCC 7 cut(s) 320, 671, 992, 1118, 1135, 1163, 1175
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 2 cut(s) 424, 1567
BaeI ACNNNNGTAYC 2 cut(s) 619, 652
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 2 cut(s) 60, 424
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 3 cut(s) 60, 190, 1567
BccI CCATC 6 cut(s) 176, 515, 551, 1126, 1282, 1375
BceAI ACGGC 1 cut(s) 1267
BciVI GTATCC 1 cut(s) 223
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 2 cut(s) 299, 1450
BcoDI GTCTC 3 cut(s) 131, 287, 1186
BfaI CTAG 3 cut(s) 224, 923, 1319
BfmI CTRYAG 2 cut(s) 618, 1434
BfuAI ACCTGC 1 cut(s) 823
BfuI GTATCC 1 cut(s) 223
BlpI GCTNAGC 1 cut(s) 1323
Bme18I GGWCC 7 cut(s) 320, 671, 992, 1118, 1135, 1163, 1175
BmrI ACTGGG 2 cut(s) 426, 1101
BmsI GCATC 6 cut(s) 376, 515, 892, 1304, 1367, 1418
BmuI ACTGGG 2 cut(s) 426, 1101
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 4 cut(s) 966, 1017, 1317, 1562
Bpu1102I GCTNAGC 1 cut(s) 1323
BpuMI CCSGG 2 cut(s) 299, 1450
Bsa29I ATCGAT 1 cut(s) 458
BsaI GGTCTC 3 cut(s) 131, 287, 1186
BsaJI CCNNGG 7 cut(s) 12, 297, 819, 930, 1148, 1171, 1347
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 9 cut(s) 67, 431, 668, 758, 851, 989, 1160, 1172, 1508
Bse1I ACTGG 5 cut(s) 421, 736, 983, 1107, 1454
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 602
BseCI ATCGAT 1 cut(s) 458
BseDI CCNNGG 7 cut(s) 12, 297, 819, 930, 1148, 1171, 1347
BseGI GGATG 4 cut(s) 367, 509, 526, 1015
BseLI CCNNNNNNNGG 9 cut(s) 67, 431, 668, 758, 851, 989, 1160, 1172, 1508
BseMI GCAATG 1 cut(s) 602
BseMII CTCAG 5 cut(s) 126, 369, 507, 645, 1337
BseNI ACTGG 5 cut(s) 421, 736, 983, 1107, 1454
BseRI GAGGAG 6 cut(s) 582, 651, 654, 704, 711, 954
BseSI GKGCMC 2 cut(s) 424, 1567
BsgI GTGCAG 1 cut(s) 726
BshFI GGCC 8 cut(s) 422, 466, 1081, 1153, 1212, 1315, 1453, 1535
BshVI ATCGAT 1 cut(s) 458
BsiHKAI GWGCWC 3 cut(s) 60, 190, 1567
BsiSI CCGG 3 cut(s) 299, 572, 1450
BslFI GGGAC 2 cut(s) 333, 1121
BslI CCNNNNNNNGG 9 cut(s) 67, 431, 668, 758, 851, 989, 1160, 1172, 1508
BsmAI GTCTC 3 cut(s) 131, 287, 1186
BsmFI GGGAC 2 cut(s) 333, 1121
BsnI GGCC 8 cut(s) 422, 466, 1081, 1153, 1212, 1315, 1453, 1535
Bso31I GGTCTC 3 cut(s) 131, 287, 1186
Bsp120I GGGCCC 1 cut(s) 420
Bsp1286I GDGCHC 4 cut(s) 60, 190, 424, 1567
Bsp143I GATC 6 cut(s) 117, 130, 535, 805, 823, 934
Bsp1720I GCTNAGC 1 cut(s) 1323
Bsp19I CCATGG 1 cut(s) 1347
BspACI CCGC 7 cut(s) 61, 342, 596, 608, 1058, 1078, 1092
BspANI GGCC 8 cut(s) 422, 466, 1081, 1153, 1212, 1315, 1453, 1535
BspCNI CTCAG 5 cut(s) 127, 370, 508, 644, 1336
BspDI ATCGAT 1 cut(s) 458
BspHI TCATGA 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 6 cut(s) 125, 125, 138, 530, 831, 942
BspTNI GGTCTC 3 cut(s) 131, 287, 1186
BsrDI GCAATG 1 cut(s) 602
BsrI ACTGG 5 cut(s) 421, 736, 983, 1107, 1454
BssECI CCNNGG 7 cut(s) 12, 297, 819, 930, 1148, 1171, 1347
BssMI GATC 6 cut(s) 117, 130, 535, 805, 823, 934
BssT1I CCWWGG 3 cut(s) 12, 819, 1347
Bst4CI ACNGT 2 cut(s) 1303, 1465
Bst6I CTCTTC 2 cut(s) 264, 735
BstAPI GCANNNNNTGC 2 cut(s) 1445, 1562
BstDEI CTNAG 5 cut(s) 135, 378, 516, 631, 1323
BstDSI CCRYGG 1 cut(s) 1347
BstF5I GGATG 4 cut(s) 367, 509, 526, 1015
BstKTI GATC 6 cut(s) 120, 133, 538, 808, 826, 937
BstMAI GTCTC 3 cut(s) 131, 287, 1186
BstMBI GATC 6 cut(s) 117, 130, 535, 805, 823, 934
BstMWI GCNNNNNNNGC 7 cut(s) 185, 373, 604, 1394, 1445, 1505, 1562
BstSFI CTRYAG 2 cut(s) 618, 1434
BstSLI GKGCMC 2 cut(s) 424, 1567
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 4 cut(s) 117, 130, 823, 934
BstYI RGATCY 4 cut(s) 117, 130, 823, 934
Bsu15I ATCGAT 1 cut(s) 458
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 8 cut(s) 422, 466, 1081, 1153, 1212, 1315, 1453, 1535
BsuTUI ATCGAT 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 1347
BtsCI GGATG 4 cut(s) 367, 509, 526, 1015
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 4 cut(s) 513, 641, 772, 990
BveI ACCTGC 1 cut(s) 823
CaiI CAGNNNCTG 2 cut(s) 989, 1445
CciI TCATGA 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 458
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 2 cut(s) 757, 1114
Csp6I GTAC 1 cut(s) 836
CviAII CATG 6 cut(s) 28, 1129, 1241, 1348, 1531, 1549
CviQI GTAC 1 cut(s) 836
DdeI CTNAG 5 cut(s) 135, 378, 516, 631, 1323
DpnI GATC 6 cut(s) 119, 132, 537, 807, 825, 936
DpnII GATC 6 cut(s) 117, 130, 535, 805, 823, 934
DraIII CACNNNGTG 1 cut(s) 1562
DrdI GACNNNNNNGTC 1 cut(s) 1107
DseDI GACNNNNNNGTC 1 cut(s) 1107
EaeI YGGCCR 2 cut(s) 1079, 1451
Eam1104I CTCTTC 2 cut(s) 264, 735
EarI CTCTTC 2 cut(s) 264, 735
EciI GGCGGA 1 cut(s) 585
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 12, 819, 1347
Eco147I AGGCCT 1 cut(s) 1315
Eco24I GRGCYC 2 cut(s) 60, 424
Eco31I GGTCTC 3 cut(s) 131, 287, 1186
Eco47I GGWCC 7 cut(s) 320, 671, 992, 1118, 1135, 1163, 1175
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 164, 366
Eco81I CCTNAGG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 2 cut(s) 420, 421
EcoRI GAATTC 1 cut(s) 471
EcoT14I CCWWGG 3 cut(s) 12, 819, 1347
EcoT38I GRGCYC 2 cut(s) 60, 424
ErhI CCWWGG 3 cut(s) 12, 819, 1347
FaeI CATG 6 cut(s) 31, 1132, 1244, 1351, 1534, 1552
FalI AAGNNNNNCTT 2 cut(s) 460, 492
FaqI GGGAC 2 cut(s) 333, 1121
FatI CATG 6 cut(s) 27, 1128, 1240, 1347, 1530, 1548
FauNDI CATATG 1 cut(s) 1159
FbaI TGATCA 1 cut(s) 805
FblI GTMKAC 1 cut(s) 1111
FokI GGATG 4 cut(s) 354, 496, 533, 1002
FriOI GRGCYC 2 cut(s) 60, 424
FspBI CTAG 3 cut(s) 224, 923, 1319
GsuI CTGGAG 4 cut(s) 966, 1017, 1317, 1562
HaeIII GGCC 8 cut(s) 422, 466, 1081, 1153, 1212, 1315, 1453, 1535
HapII CCGG 3 cut(s) 299, 572, 1450
HgaI GACGC 1 cut(s) 50
Hin1II CATG 6 cut(s) 31, 1132, 1244, 1351, 1534, 1552
HincII GTYRAC 1 cut(s) 1112
HindII GTYRAC 1 cut(s) 1112
HinfI GANTC 7 cut(s) 383, 409, 575, 1003, 1144, 1478, 1523
HpaII CCGG 3 cut(s) 299, 572, 1450
HphI GGTGA 4 cut(s) 115, 302, 566, 725
Hpy166II GTNNAC 4 cut(s) 391, 1112, 1121, 1565
Hpy188I TCNGA 3 cut(s) 372, 805, 901
Hpy188III TCNNGA 7 cut(s) 28, 121, 134, 191, 1019, 1229, 1334
Hpy8I GTNNAC 4 cut(s) 391, 1112, 1121, 1565
HpyCH4III ACNGT 2 cut(s) 1303, 1465
HpyCH4V TGCA 8 cut(s) 506, 620, 626, 743, 893, 1244, 1358, 1565
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 373, 604, 1394, 1445, 1505, 1562
HpyF3I CTNAG 5 cut(s) 135, 378, 516, 631, 1323
Hsp92II CATG 6 cut(s) 31, 1132, 1244, 1351, 1534, 1552
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 6 cut(s) 117, 130, 535, 805, 823, 934
LmnI GCTCC 4 cut(s) 55, 63, 148, 566
LweI GCATC 6 cut(s) 376, 515, 892, 1304, 1367, 1418
MabI ACCWGGT 2 cut(s) 757, 1114
MaeI CTAG 3 cut(s) 224, 923, 1319
MaeIII GTNAC 3 cut(s) 925, 1026, 1456
MalI GATC 6 cut(s) 119, 132, 537, 807, 825, 936
MboI GATC 6 cut(s) 117, 130, 535, 805, 823, 934
MboII GAAGA 8 cut(s) 16, 136, 281, 359, 362, 365, 722, 1244
MflI RGATCY 4 cut(s) 117, 130, 823, 934
MhlI GDGCHC 4 cut(s) 60, 190, 424, 1567
MluCI AATT 5 cut(s) 71, 471, 547, 865, 881
MlyI GAGTC 2 cut(s) 584, 1517
MseI TTAA 3 cut(s) 237, 1284, 1308
MslI CAYNNNNRTG 1 cut(s) 1020
MspA1I CMGCKG 3 cut(s) 344, 623, 1445
MspI CCGG 3 cut(s) 299, 572, 1450
MwoI GCNNNNNNNGC 7 cut(s) 185, 373, 604, 1394, 1445, 1505, 1562
NciI CCSGG 2 cut(s) 299, 1450
NcoI CCATGG 1 cut(s) 1347
NdeI CATATG 1 cut(s) 1159
NdeII GATC 6 cut(s) 117, 130, 535, 805, 823, 934
NlaIII CATG 6 cut(s) 31, 1132, 1244, 1351, 1534, 1552
NmuCI GTSAC 1 cut(s) 925
PagI TCATGA 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 823
PceI AGGCCT 1 cut(s) 1315
PfeI GAWTC 5 cut(s) 383, 409, 1003, 1144, 1478
PflFI GACNNNGTC 1 cut(s) 1116
PflMI CCANNNNNTGG 3 cut(s) 431, 989, 1160
PfoI TCCNGGA 2 cut(s) 667, 1539
PleI GAGTC 2 cut(s) 583, 1517
PpsI GAGTC 2 cut(s) 583, 1517
Psp124BI GAGCTC 1 cut(s) 60
PspOMI GGGCCC 1 cut(s) 420
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 2 cut(s) 989, 1445
PsuI RGATCY 4 cut(s) 117, 130, 823, 934
PsyI GACNNNGTC 1 cut(s) 1116
PvuII CAGCTG 2 cut(s) 623, 1445
RsaI GTAC 1 cut(s) 837
RsaNI GTAC 1 cut(s) 836
RseI CAYNNNNRTG 1 cut(s) 1020
SacI GAGCTC 1 cut(s) 60
SalI GTCGAC 1 cut(s) 1110
SaqAI TTAA 3 cut(s) 237, 1284, 1308
Sau3AI GATC 6 cut(s) 117, 130, 535, 805, 823, 934
SchI GAGTC 2 cut(s) 584, 1517
SduI GDGCHC 4 cut(s) 60, 190, 424, 1567
SexAI ACCWGGT 2 cut(s) 757, 1114
SfaNI GCATC 6 cut(s) 376, 515, 892, 1304, 1367, 1418
SfcI CTRYAG 2 cut(s) 618, 1434
SinI GGWCC 7 cut(s) 320, 671, 992, 1118, 1135, 1163, 1175
SmiMI CAYNNNNRTG 1 cut(s) 1020
Sse9I AATT 5 cut(s) 71, 471, 547, 865, 881
SseBI AGGCCT 1 cut(s) 1315
SsiI CCGC 7 cut(s) 61, 342, 596, 608, 1058, 1078, 1092
SspMI CTAG 3 cut(s) 224, 923, 1319
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 1315
StyI CCWWGG 3 cut(s) 12, 819, 1347
TaaI ACNGT 2 cut(s) 1303, 1465
TaqI TCGA 2 cut(s) 458, 1111
TasI AATT 5 cut(s) 71, 471, 547, 865, 881
TauI GCSGC 2 cut(s) 610, 1081
TfiI GAWTC 5 cut(s) 383, 409, 1003, 1144, 1478
Tru1I TTAA 3 cut(s) 237, 1284, 1308
Tru9I TTAA 3 cut(s) 237, 1284, 1308
TscAI CASTG 4 cut(s) 520, 648, 772, 990
TseFI GTSAC 1 cut(s) 925
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 5 cut(s) 17, 44, 263, 480, 1565
TspGWI ACGGA 2 cut(s) 53, 553
TspRI CASTG 4 cut(s) 520, 648, 772, 990
Tth111I GACNNNGTC 1 cut(s) 1116
Van91I CCANNNNNTGG 3 cut(s) 431, 989, 1160
VneI GTGCAC 1 cut(s) 1563
VpaK11BI GGWCC 7 cut(s) 320, 671, 992, 1118, 1135, 1163, 1175
XapI RAATTY 2 cut(s) 471, 865
XmiI GTMKAC 1 cut(s) 1111
XspI CTAG 3 cut(s) 224, 923, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.