pycom14g15930

WW domain binding protein 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0008220
Physical Location & Seq
Reverse (-)
18379473 .. 18383339
3867 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1530 bp
ATGAAGACGACGAAGGGAGGGAAGGTGATGAACCCTACGGACGCTTACCGGAAGGAGCTCCGGAAGAAGGAATTGAAACGGAATAAAAAAGAACGAAAGAAGGTGAGAGAGGTGGGGATCTTGAAGAAGGATCCCGATACTTTGAAAGAGCAGATTGATAAGCTGGAAATGATGAAGGCTGATGGCGCTCTTGACAAGGCAAGAAAACACAAGAAGAGGCAACTAGAGGATACACTTAACCTTGTTATAAAGAAGCAGAAGGAATATGTAGAGAAACAGAAAGAAAAGGGCGAGGTCCCAGTTATGTTCAGTCATTTGGGGCCGCCTAAAAGACGAAAGACTGCAGAAGAAGAGGAGAGAGCGAAGCATCCGATGCCTGAGGACTCAGTTTACTTCCATCCGACCCTGAATCCTACTGGTGCCCCACCACCTGGAAAGCCTCCAATGTTTAAATCGTCAATAGGACCAAGAATTCCCTTATCTGGTGCTTCGTCAAGTGGTGCTGCATCATCCTCTAAAATGGAGTCAGAGGACGCTGTACCTCTGGCTGAATCTGGTGACAATGGCCCTGGTGATGGCTCTGTCATACCTGAGTCCTTGCCGCTACCTCCTCCGCCTCCATTGCCGCCTAACCCTGCAGCTACAAACCCAGGTATCTCATTGCCGCCACCACCACCACCCCCACCTCCAGGACCCCTGCCTAAAGAGCAGATTTCTAATCACCCCCTACTTCCCCCTCCACCTTTTCAACAGTCCGCCCAGCCTCCTCCTCCTGGTATCAGCGGAAATGAGAAGGAACAAAATCAATCTTCATTGTCTGATCTAACCTCTAAGGACTCCACACAGGTGCATACCATGCTTCCTCCTCCTCCTCCTCCACCTCCAGGTTTACTGCCTAAGTCAACAAATAATCAGTCGGGAGGTGCAACATCTGACGCTGAAACCAATAATGCTCAACTTACCAAGGATTTTACTAACATGGTTCCACCACCTCTTCCTCCTCCTCCTCCTCCTCCAAGACAACAACCTCCAGTTCCTGGACCCACCCTTATTCCAAATTTACATCCTGATGTATTGCCCCCAGGTCCCCCGGGAATGATGGTCCCAATGGTCCCCAGGCCCCCATACGGTCCTCCCCCTGGACCTCCCCCAATGATGAGACCACCACTTCCACCTGGGCCTCCTCCTACTTATCAAGAAGATGATTATGCTGCTCGAGTGGCTGCCCATCAGAAACCTTCATATGTTAAATCTGCAGCATCTACTGTTGTGAAGAGGCCTCTGGCTCAGCACACTCCAGAACTTACATCCATGGTTCCTGCATCTGTTCGGGTAAGGAGAGAGATGGCCGCCCCAAAAGCAAAAGCAAAACCTTCACTCCCAACCACAGCAGCACCTACCCAGTCAGCAACTCCTCCTGTTAAACCAGAGTCAGCAAACTCGTCGTCAGCACCAAAAGGCAAGAGCATAGATGACTCGTATATGGCTTTCCTGGAGGACATGAAGGCGCTCGGAGCACTTGAAGGTTGA

Protein Analysis

510

Amino Acids

54.37

Weight (kDa)

9.53

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wbp11 PF09429 7 - 83 6.9e-23 WW domain binding protein 11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 2 cut(s) 431, 1037
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 8 cut(s) 323, 602, 614, 626, 665, 756, 783, 1350
AclWI GGATC 3 cut(s) 125, 125, 138
AcoI YGGCCR 1 cut(s) 1347
AcsI RAATTY 2 cut(s) 471, 1057
AfaI GTAC 1 cut(s) 540
AgsI TTSAA 5 cut(s) 76, 124, 145, 749, 1523
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 3 cut(s) 58, 163, 641
AluI AGCT 3 cut(s) 58, 163, 641
Alw21I GWGCWC 2 cut(s) 60, 1519
Alw26I GTCTC 1 cut(s) 1153
AlwI GGATC 3 cut(s) 125, 125, 138
AlwNI CAGNNNCTG 1 cut(s) 1037
Ama87I CYCGRG 2 cut(s) 1090, 1215
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 6 cut(s) 320, 565, 1118, 1178, 1277, 1347
ApeKI GCWGC 6 cut(s) 503, 638, 1211, 1223, 1256, 1391
ApoI RAATTY 2 cut(s) 471, 1057
ArsI GACNNNNNNTTYG 4 cut(s) 899, 931, 1430, 1462
AspLEI GCGC 2 cut(s) 188, 1510
AsuC2I CCSGG 2 cut(s) 1091, 1092
AsuHPI GGTGA 5 cut(s) 37, 115, 569, 584, 713
AvaI CYCGRG 2 cut(s) 1090, 1215
AvaII GGWCC 9 cut(s) 295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
AxyI CCTNAGG 1 cut(s) 378
BaeGI GKGCMC 1 cut(s) 424
BaeI ACNNNNGTAYC 2 cut(s) 637, 670
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 60, 1519
BbvI GCAGC 6 cut(s) 490, 650, 1198, 1210, 1268, 1403
BccI CCATC 6 cut(s) 176, 405, 569, 1093, 1236, 1339
BcgI CGANNNNNNTGC 2 cut(s) 1425, 1459
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 2 cut(s) 1091, 1092
BcoDI GTCTC 1 cut(s) 1153
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 3 cut(s) 342, 636, 1254
BfoI RGCGCY 2 cut(s) 189, 1511
BfuI GTATCC 1 cut(s) 223
BlpI GCTNAGC 1 cut(s) 1287
Bme18I GGWCC 9 cut(s) 295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
BmeT110I CYCGRG 2 cut(s) 1090, 1215
BmrI ACTGGG 2 cut(s) 293, 1396
BmsI GCATC 5 cut(s) 363, 376, 515, 1268, 1331
BmuI ACTGGG 2 cut(s) 293, 1396
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 5 cut(s) 672, 867, 1014, 1281, 1514
Bpu1102I GCTNAGC 1 cut(s) 1287
BpuMI CCSGG 2 cut(s) 1091, 1092
BsaI GGTCTC 1 cut(s) 1153
BsaWI WCCGGW 2 cut(s) 48, 60
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 1362, 1392
Bse1I ACTGG 4 cut(s) 299, 421, 1031, 1402
Bse21I CCTNAGG 1 cut(s) 378
Bse3DI GCAATG 2 cut(s) 620, 659
BseAI TCCGGA 1 cut(s) 60
BseGI GGATG 5 cut(s) 367, 397, 509, 1063, 1307
BseMI GCAATG 2 cut(s) 620, 659
BseMII CTCAG 4 cut(s) 369, 399, 582, 1301
BseNI ACTGG 4 cut(s) 299, 421, 1031, 1402
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 6 cut(s) 490, 650, 1198, 1210, 1268, 1403
BseYI CCCAGC 1 cut(s) 759
BshFI GGCC 6 cut(s) 322, 567, 1120, 1180, 1279, 1349
BshNI GGYRCC 1 cut(s) 419
BsiHKAI GWGCWC 2 cut(s) 60, 1519
BsiHKCI CYCGRG 2 cut(s) 1090, 1215
BsiSI CCGG 3 cut(s) 49, 61, 1091
BslFI GGGAC 4 cut(s) 281, 1071, 1088, 1097
BsmAI GTCTC 1 cut(s) 1153
BsmFI GGGAC 4 cut(s) 281, 1071, 1088, 1097
BsnI GGCC 6 cut(s) 322, 567, 1120, 1180, 1279, 1349
Bso31I GGTCTC 1 cut(s) 1153
BsoBI CYCGRG 2 cut(s) 1090, 1215
Bsp1286I GDGCHC 3 cut(s) 60, 424, 1519
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 117, 130, 820
Bsp1720I GCTNAGC 1 cut(s) 1287
Bsp19I CCATGG 1 cut(s) 1311
BspACI CCGC 8 cut(s) 323, 602, 614, 626, 665, 756, 783, 1350
BspANI GGCC 6 cut(s) 322, 567, 1120, 1180, 1279, 1349
BspCNI CTCAG 4 cut(s) 370, 398, 583, 1300
BspEI TCCGGA 1 cut(s) 60
BspMAI CTGCAG 3 cut(s) 346, 640, 1258
BspPI GGATC 3 cut(s) 125, 125, 138
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 1153
BsrDI GCAATG 2 cut(s) 620, 659
BsrI ACTGG 4 cut(s) 299, 421, 1031, 1402
BssMI GATC 3 cut(s) 117, 130, 820
BssT1I CCWWGG 2 cut(s) 963, 1311
Bst4CI ACNGT 3 cut(s) 753, 1130, 1267
Bst6I CTCTTC 4 cut(s) 209, 345, 999, 1268
BstAPI GCANNNNNTGC 2 cut(s) 373, 856
BstDEI CTNAG 6 cut(s) 378, 385, 591, 831, 897, 1287
BstDSI CCRYGG 1 cut(s) 1311
BstF5I GGATG 5 cut(s) 367, 397, 509, 1063, 1307
BstH2I RGCGCY 2 cut(s) 189, 1511
BstHHI GCGC 2 cut(s) 188, 1510
BstKTI GATC 3 cut(s) 120, 133, 823
BstMAI GTCTC 1 cut(s) 1153
BstMBI GATC 3 cut(s) 117, 130, 820
BstMWI GCNNNNNNNGC 8 cut(s) 185, 373, 622, 706, 856, 1220, 1358, 1514
BstSFI CTRYAG 3 cut(s) 342, 636, 1254
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 6 cut(s) 490, 650, 1198, 1210, 1268, 1403
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 117, 130
BstYI RGATCY 2 cut(s) 117, 130
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 6 cut(s) 322, 567, 1120, 1180, 1279, 1349
BtgI CCRYGG 1 cut(s) 1311
BtsCI GGATG 5 cut(s) 367, 397, 509, 1063, 1307
CaiI CAGNNNCTG 1 cut(s) 1037
CfoI GCGC 2 cut(s) 188, 1510
Cfr9I CCCGGG 1 cut(s) 1090
CseI GACGC 3 cut(s) 50, 542, 944
Csp6I GTAC 1 cut(s) 539
CviAII CATG 4 cut(s) 856, 979, 1312, 1501
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 6 cut(s) 378, 385, 591, 831, 897, 1287
DpnI GATC 3 cut(s) 119, 132, 822
DpnII GATC 3 cut(s) 117, 130, 820
DraI TTTAAA 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 1347
Eam1104I CTCTTC 4 cut(s) 209, 345, 999, 1268
EarI CTCTTC 4 cut(s) 209, 345, 999, 1268
EciI GGCGGA 2 cut(s) 603, 745
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 963, 1311
Eco147I AGGCCT 1 cut(s) 1279
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 1153
Eco47I GGWCC 9 cut(s) 295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
Eco53kI GAGCTC 1 cut(s) 58
Eco81I CCTNAGG 1 cut(s) 378
Eco88I CYCGRG 2 cut(s) 1090, 1215
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 4 cut(s) 295, 692, 1085, 1119
EcoRI GAATTC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 963, 1311
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 2 cut(s) 963, 1311
FaeI CATG 4 cut(s) 859, 982, 1315, 1504
FaqI GGGAC 4 cut(s) 281, 1071, 1088, 1097
FatI CATG 4 cut(s) 855, 978, 1311, 1500
FauNDI CATATG 1 cut(s) 1243
FokI GGATG 5 cut(s) 354, 384, 496, 1050, 1294
FriOI GRGCYC 1 cut(s) 60
FspBI CTAG 1 cut(s) 224
GlaI GCGC 2 cut(s) 187, 1509
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 5 cut(s) 672, 867, 1014, 1281, 1514
HaeII RGCGCY 2 cut(s) 189, 1511
HaeIII GGCC 6 cut(s) 322, 567, 1120, 1180, 1279, 1349
HapII CCGG 3 cut(s) 49, 61, 1091
HgaI GACGC 3 cut(s) 50, 542, 944
HhaI GCGC 2 cut(s) 188, 1510
Hin1II CATG 4 cut(s) 859, 982, 1315, 1504
Hin6I GCGC 2 cut(s) 186, 1508
HinP1I GCGC 2 cut(s) 186, 1508
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 8 cut(s) 383, 409, 524, 551, 593, 836, 1430, 1475
HpaII CCGG 3 cut(s) 49, 61, 1091
HphI GGTGA 5 cut(s) 37, 115, 569, 584, 713
Hpy166II GTNNAC 3 cut(s) 391, 890, 903
Hpy188I TCNGA 7 cut(s) 372, 402, 529, 820, 934, 1233, 1514
Hpy188III TCNNGA 8 cut(s) 61, 121, 134, 191, 918, 1067, 1196, 1298
Hpy8I GTNNAC 3 cut(s) 391, 890, 903
Hpy99I CGWCG 2 cut(s) 13, 1447
HpyCH4III ACNGT 3 cut(s) 753, 1130, 1267
HpyCH4V TGCA 7 cut(s) 344, 506, 638, 850, 926, 1256, 1322
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 373, 622, 706, 856, 1220, 1358, 1514
HpyF3I CTNAG 6 cut(s) 378, 385, 591, 831, 897, 1287
Hsp92II CATG 4 cut(s) 859, 982, 1315, 1504
HspAI GCGC 2 cut(s) 186, 1508
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 117, 130, 820
LmnI GCTCC 3 cut(s) 55, 63, 1514
Lsp1109I GCAGC 6 cut(s) 490, 650, 1198, 1210, 1268, 1403
LweI GCATC 5 cut(s) 363, 376, 515, 1268, 1331
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 557
MalI GATC 3 cut(s) 119, 132, 822
MboI GATC 3 cut(s) 117, 130, 820
MflI RGATCY 2 cut(s) 117, 130
MhlI GDGCHC 3 cut(s) 60, 424, 1519
MluCI AATT 3 cut(s) 71, 471, 1057
MlyI GAGTC 6 cut(s) 377, 533, 602, 830, 1439, 1469
MmeI TCCRAC 1 cut(s) 425
MroI TCCGGA 1 cut(s) 60
MseI TTAA 4 cut(s) 237, 450, 1248, 1422
MslI CAYNNNNRTG 2 cut(s) 845, 1068
MspA1I CMGCKG 1 cut(s) 783
MspI CCGG 3 cut(s) 49, 61, 1091
MwoI GCNNNNNNNGC 8 cut(s) 185, 373, 622, 706, 856, 1220, 1358, 1514
NciI CCSGG 2 cut(s) 1091, 1092
NcoI CCATGG 1 cut(s) 1311
NdeI CATATG 1 cut(s) 1243
NdeII GATC 3 cut(s) 117, 130, 820
NlaIII CATG 4 cut(s) 859, 982, 1315, 1504
NmuCI GTSAC 1 cut(s) 557
OliI CACNNNNGTG 1 cut(s) 845
PaeR7I CTCGAG 1 cut(s) 1215
PceI AGGCCT 1 cut(s) 1279
PfeI GAWTC 2 cut(s) 409, 551
PflMI CCANNNNNTGG 2 cut(s) 431, 1037
PfoI TCCNGGA 3 cut(s) 688, 1036, 1491
PleI GAGTC 6 cut(s) 377, 532, 601, 830, 1438, 1469
PpsI GAGTC 6 cut(s) 377, 532, 601, 830, 1438, 1469
PpuMI RGGWCCY 3 cut(s) 295, 692, 1085
PsiI TTATAA 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 3 cut(s) 295, 692, 1085
PspFI CCCAGC 1 cut(s) 759
PspPPI RGGWCCY 3 cut(s) 295, 692, 1085
PspXI VCTCGAGB 1 cut(s) 1215
PstI CTGCAG 3 cut(s) 346, 640, 1258
PstNI CAGNNNCTG 1 cut(s) 1037
PsuI RGATCY 2 cut(s) 117, 130
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 2 cut(s) 845, 1068
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 4 cut(s) 237, 450, 1248, 1422
Sau3AI GATC 3 cut(s) 117, 130, 820
SchI GAGTC 6 cut(s) 377, 533, 602, 830, 1439, 1469
SduI GDGCHC 3 cut(s) 60, 424, 1519
SfaNI GCATC 5 cut(s) 363, 376, 515, 1268, 1331
SfcI CTRYAG 3 cut(s) 342, 636, 1254
Sfr274I CTCGAG 1 cut(s) 1215
SinI GGWCC 9 cut(s) 295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
SlaI CTCGAG 1 cut(s) 1215
SmaI CCCGGG 1 cut(s) 1092
SmiMI CAYNNNNRTG 2 cut(s) 845, 1068
SmlI CTYRAG 1 cut(s) 1215
SmoI CTYRAG 1 cut(s) 1215
Sse9I AATT 3 cut(s) 71, 471, 1057
SseBI AGGCCT 1 cut(s) 1279
SsiI CCGC 8 cut(s) 323, 602, 614, 626, 665, 756, 783, 1350
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 1279
StyI CCWWGG 2 cut(s) 963, 1311
TaaI ACNGT 3 cut(s) 753, 1130, 1267
TaqI TCGA 1 cut(s) 1216
TasI AATT 3 cut(s) 71, 471, 1057
TauI GCSGC 5 cut(s) 325, 604, 628, 667, 1352
TfiI GAWTC 2 cut(s) 409, 551
Tru1I TTAA 4 cut(s) 237, 450, 1248, 1422
Tru9I TTAA 4 cut(s) 237, 450, 1248, 1422
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 6 cut(s) 503, 638, 1211, 1223, 1256, 1391
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 6 cut(s) 17, 44, 188, 801, 1230, 1517
TspGWI ACGGA 2 cut(s) 53, 94
TspMI CCCGGG 1 cut(s) 1090
Van91I CCANNNNNTGG 2 cut(s) 431, 1037
VpaK11BI GGWCC 9 cut(s) 295, 464, 692, 1040, 1085, 1102, 1111, 1130, 1142
XapI RAATTY 2 cut(s) 471, 1057
XhoI CTCGAG 1 cut(s) 1215
XmaI CCCGGG 1 cut(s) 1090
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.