Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

18848510 .. 18851148

Gene Structure 2639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTGATCACCTGGTGTTGTGTGTTGACCGCTTCACAAAAACTGAAAGCTTGCAAGGGAGTGAGACCCCGGGATCTTCTGTAGAGGGTTCAAGCTCCCAATCTGCTGAGCTACCCGCTTGTGCCATTGATGTTAAGGGGGTCGGGGAGAAGGCTATAGCTGAAGAAGAAGAGCCTCTGATTCAGACGGTTGAATGTCGCATTTGCCAGGAAGAAGATAGCGTTAAGAATTTGGAGGTCCCCTGTTCTTGCAGCGGTAGCTTAAAATTCGCTCATAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAATTTGTGAAATTTGTCATCAGTCATACCAACCTGATTATACTGCCCCACCACCTCCTCCTCAGTCTGAAGATACCACAATTGACATCAGTGATGGTTGGACAATCTCTGGTACCCCTTTGGATTTGCGTGATCCTCGATTATTAGCAATGGCAGCGGCTGAACGTCACTTTCTAGAGGCCGAATATGATGAGTATTCTGACACAAATGCTAGTGGAGCAGCCTTTTGCCGCTCTGTTGCTCTAATTTTAATGGCTCTTCTTCTCTTGAGGCATGCATTGACCCTCCCCAATGGTGACGGGGATGATGATGATGATGCATCCACTTTTTTTTCTCTTTTCTTGCTCCGGGCTGCTGGTTTTCTTCTCCCGTGCTACATTATGGCTTGGGCTATCAGCATATTACAACGTCGAAGGCAAAGACAGGAAGCAGCAGCACTTGCGGCAACTGAGGTTGCATTTATGCTGCAGGCAGGGCAACGCAGGGGCTTGCAGTTCACAATAGCTCCGGGACCTGCAGTGACTCCGCATCAGGAGCCAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

288

Amino Acids

31.35

Weight (kDa)

4.63

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	66 - 111	5e-13	RING-variant domain
DUF3675	PF12428	117 - 237	1e-45	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
Acc65I	GGTACC	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	428
AccBSI	CCGCTC	1 cut(s)	549
AciI	CCGC	7 cut(s)	31, 117, 255, 473, 547, 758, 842
AclWI	GGATC	2 cut(s)	82, 443
AcsI	RAATTY	3 cut(s)	229, 266, 327
AcuI	CTGAAG	2 cut(s)	183, 405
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	93, 194, 860
AjnI	CCWGG	2 cut(s)	12, 207
AluBI	AGCT	6 cut(s)	51, 96, 112, 161, 261, 821
AluI	AGCT	6 cut(s)	51, 96, 112, 161, 261, 821
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	82, 443
AlwNI	CAGNNNCTG	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	7 cut(s)	252, 470, 536, 668, 746, 749, 781
ApoI	RAATTY	3 cut(s)	229, 266, 327
Asp718I	GGTACC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	238, 827
AsuC2I	CCSGG	4 cut(s)	71, 72, 665, 825
AsuHPI	GGTGA	2 cut(s)	17, 623
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	238, 827
BanI	GGYRCC	1 cut(s)	428
BbvI	GCAGC	7 cut(s)	264, 482, 548, 655, 758, 761, 768
BccI	CCATC	2 cut(s)	288, 404
BciT130I	CCWGG	2 cut(s)	14, 209
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	4 cut(s)	71, 72, 665, 825
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	491, 528
BfmI	CTRYAG	4 cut(s)	81, 156, 782, 831
BfuAI	ACCTGC	1 cut(s)	838
BlpI	GCTNAGC	1 cut(s)	108
Bme1390I	CCNGG	6 cut(s)	14, 71, 72, 209, 665, 825
Bme18I	GGWCC	2 cut(s)	238, 827
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	238, 827
BmiI	GGNNCC	4 cut(s)	240, 430, 828, 852
BmrFI	CCNGG	6 cut(s)	14, 71, 72, 209, 665, 825
BmsI	GCATC	3 cut(s)	622, 644, 853
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	4 cut(s)	71, 72, 665, 825
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	69, 70
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bse3DI	GCAATG	2 cut(s)	307, 471
BseBI	CCWGG	2 cut(s)	14, 209
BseDI	CCNNGG	2 cut(s)	69, 70
BseGI	GGATG	2 cut(s)	625, 635
BseMI	GCAATG	2 cut(s)	307, 471
BseMII	CTCAG	3 cut(s)	99, 392, 756
BseRI	GAGGAG	2 cut(s)	363, 366
BseXI	GCAGC	7 cut(s)	264, 482, 548, 655, 758, 761, 768
BshFI	GGCC	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	71, 664, 824
BslFI	GGGAC	2 cut(s)	224, 840
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	224, 840
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	7, 74, 448
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	7 cut(s)	31, 117, 255, 473, 547, 758, 842
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	100, 391, 757
BspLI	GGNNCC	4 cut(s)	240, 430, 828, 852
BspMAI	CTGCAG	2 cut(s)	786, 835
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	2 cut(s)	82, 443
BspQI	GCTCTTC	2 cut(s)	165, 579
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	549
BsrDI	GCAATG	2 cut(s)	307, 471
BssECI	CCNNGG	2 cut(s)	69, 70
BssMI	GATC	3 cut(s)	7, 74, 448
Bst2UI	CCWGG	2 cut(s)	14, 209
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	165, 579
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	4 cut(s)	53, 591, 786, 806
BstDEI	CTNAG	3 cut(s)	108, 378, 765
BstF5I	GGATG	2 cut(s)	625, 635
BstKTI	GATC	3 cut(s)	10, 77, 451
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	7, 74, 448
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 470, 533, 755, 758, 790, 850
BstNI	CCWGG	2 cut(s)	14, 209
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	6 cut(s)	12, 69, 70, 207, 663, 823
BstSFI	CTRYAG	4 cut(s)	81, 156, 782, 831
BstV1I	GCAGC	7 cut(s)	264, 482, 548, 655, 758, 761, 768
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	497
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	625, 635
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	412, 840
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	4 cut(s)	53, 591, 786, 806
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	238, 827
Cfr9I	CCCGGG	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	3 cut(s)	108, 378, 765
DpnI	GATC	3 cut(s)	9, 76, 450
DpnII	GATC	3 cut(s)	7, 74, 448
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	165, 579
EarI	CTCTTC	2 cut(s)	165, 579
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	238, 827
Eco57I	CTGAAG	2 cut(s)	183, 405
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	2 cut(s)	238, 827
EcoRII	CCWGG	2 cut(s)	12, 207
EcoT22I	ATGCAT	2 cut(s)	595, 637
FaeI	CATG	1 cut(s)	593
FaqI	GGGAC	2 cut(s)	224, 840
FatI	CATG	1 cut(s)	589
FauI	CCCGC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	622, 632
FspBI	CTAG	2 cut(s)	491, 528
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	3 cut(s)	71, 664, 824
Hin1II	CATG	1 cut(s)	593
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	181, 838
HpaII	CCGG	3 cut(s)	71, 664, 824
HphI	GGTGA	2 cut(s)	17, 623
Hpy166II	GTNNAC	2 cut(s)	28, 813
Hpy188I	TCNGA	4 cut(s)	180, 186, 385, 517
Hpy188III	TCNNGA	3 cut(s)	491, 583, 848
Hpy8I	GTNNAC	2 cut(s)	28, 813
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	3 cut(s)	145, 301, 723
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	481, 724
HpyCH4V	TGCA	9 cut(s)	55, 252, 300, 593, 635, 773, 784, 808, 833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 470, 533, 755, 758, 790, 850
HpyF3I	CTNAG	3 cut(s)	108, 378, 765
HpySE526I	ACGT	2 cut(s)	481, 724
Hsp92II	CATG	1 cut(s)	593
KpnI	GGTACC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 74, 448
LguI	GCTCTTC	2 cut(s)	165, 579
LmnI	GCTCC	5 cut(s)	101, 533, 666, 826, 850
Lsp1109I	GCAGC	7 cut(s)	264, 482, 548, 655, 758, 761, 768
LweI	GCATC	3 cut(s)	622, 644, 853
MabI	ACCWGGT	1 cut(s)	12
MaeI	CTAG	2 cut(s)	491, 528
MaeII	ACGT	2 cut(s)	481, 724
MaeIII	GTNAC	3 cut(s)	482, 611, 835
MalI	GATC	3 cut(s)	9, 76, 450
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	3 cut(s)	7, 74, 448
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 855
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	395
Mph1103I	ATGCAT	2 cut(s)	595, 637
MseI	TTAA	4 cut(s)	135, 225, 263, 566
MspA1I	CMGCKG	2 cut(s)	255, 473
MspI	CCGG	3 cut(s)	71, 664, 824
MspR9I	CCNGG	6 cut(s)	14, 71, 72, 209, 665, 825
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	2 cut(s)	14, 209
MwoI	GCNNNNNNNGC	7 cut(s)	258, 470, 533, 755, 758, 790, 850
NciI	CCSGG	4 cut(s)	71, 72, 665, 825
NdeII	GATC	3 cut(s)	7, 74, 448
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	4 cut(s)	240, 430, 828, 852
NmuCI	GTSAC	3 cut(s)	482, 611, 835
NsiI	ATGCAT	2 cut(s)	595, 637
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PciSI	GCTCTTC	2 cut(s)	165, 579
PfeI	GAWTC	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	823
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PpuMI	RGGWCCY	2 cut(s)	238, 827
Psp5II	RGGWCCY	2 cut(s)	238, 827
Psp6I	CCWGG	2 cut(s)	12, 207
PspGI	CCWGG	2 cut(s)	12, 207
PspN4I	GGNNCC	4 cut(s)	240, 430, 828, 852
PspPI	GGNCC	2 cut(s)	238, 827
PspPPI	RGGWCCY	2 cut(s)	238, 827
PstI	CTGCAG	2 cut(s)	786, 835
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SapI	GCTCTTC	2 cut(s)	165, 579
SaqAI	TTAA	4 cut(s)	135, 225, 263, 566
Sau3AI	GATC	3 cut(s)	7, 74, 448
Sau96I	GGNCC	2 cut(s)	238, 827
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	6 cut(s)	14, 71, 72, 209, 665, 825
SexAI	ACCWGGT	1 cut(s)	12
SfaNI	GCATC	3 cut(s)	622, 644, 853
SfcI	CTRYAG	4 cut(s)	81, 156, 782, 831
SinI	GGWCC	2 cut(s)	238, 827
SmaI	CCCGGG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 855
SsiI	CCGC	7 cut(s)	31, 117, 255, 473, 547, 758, 842
SspMI	CTAG	2 cut(s)	491, 528
StyD4I	CCNGG	6 cut(s)	12, 69, 70, 207, 663, 823
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	484, 727
TaqI	TCGA	2 cut(s)	454, 727
TasI	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 855
TauI	GCSGC	3 cut(s)	476, 549, 761
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	135, 225, 263, 566
Tru9I	TTAA	4 cut(s)	135, 225, 263, 566
TscAI	CASTG	2 cut(s)	412, 840
TseFI	GTSAC	3 cut(s)	482, 611, 835
TseI	GCWGC	7 cut(s)	252, 470, 536, 668, 746, 749, 781
Tsp45I	GTSAC	3 cut(s)	482, 611, 835
TspMI	CCCGGG	1 cut(s)	70
TspRI	CASTG	2 cut(s)	412, 840
VpaK11BI	GGWCC	2 cut(s)	238, 827
XapI	RAATTY	3 cut(s)	229, 266, 327
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	1 cut(s)	593
XmaI	CCCGGG	1 cut(s)	70
XspI	CTAG	2 cut(s)	491, 528
Zsp2I	ATGCAT	2 cut(s)	595, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.