Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013676

Physical Location & Seq

Genomic Coordinates Reverse (-)

19281451 .. 19282775

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAAGAAGATCAAGAGTTGAAGTATGTGTGCAAGTTCTGCACCAAGAGCTTCCCCTGCGGCAGATCCTTGGGAGGTCACATGAAATCTCACTTGACCAACCATTCGCCGGAAACAGAGGAAAAGCTCAACAGCGGCAGAGTTAAGCCCTCGTCAGGCAACAATGGTGGTTCTGATTTCGGAGGAGGACCACATCAGCAACCCGGTTACGACCTCAGGGAGAATCCGAAAAAAACTTTGAGACTCGCGGATTTGAGTGAGGAGACTTCGTTTCTTCTGGACAAGTTTTGTAGAGAATGTGGCAAAGGGTTTCAGTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCAGAAAAAGAAAGAGTTTCGATTGAGAGCTTTGAAGAACATGAAGGTTCTTGGACTAGCCAATCAGACAACGAAACTCCTACTGCTGCTGCTCCCAATCGGAAAAGAAGATCGGGGAGAAGAAGAACAAGGTACATGGGAGCAACAACTTCCTCTTCTAATTTTTCAATTGCTAATGCTTCTGTTCCTGCTACTACTACTTCCTCTGTTTCCGAGACTGAGCAGGAACAAGAAGAGGTTGCTATGTGTTTGATGATGCTTTCGAGGGATTCGAGTCACTGGGGCGGGTTAAAATTAGTACCTCATAACTCTCCCGATGACAATTCAGGGTTCTCCGATTCTCCATCATCAGTTAGAACAATTGCGGATATTAAGGGTAAGATTGATGAAACTTTGAAACTGAAGAACAAACTCACTAAAAAGGTATTGGAGCCTCGAGATTTCGAGTCCCTAGCAGTACTAGAAGGTAGAAAATCCAAGTTTTGCTCTTCTGATGGCGGGTTTTCAAAGAATGATAAATTGGGTTCCAACAAGTACAACTCAAGCAAGAGAAAGATCAGAGAGGCTTGTGATTTCGAATTGAGGTCGGATAAGACCCCGAAAAAATCGAATACTAGTAGAGCTGATGCTTTGGATTCTGAAGTAGTAGTATGCAAGAGTTCACAAAGGAGAAGCAAATTCGAATGTACTACTTGCAACAAGGTTTTTCGATCGTACCAAGCTCTCGGAGGCCATAGGGCAAGTCACAAGAAGATCAAAGGATGCTTCGCCTCGAAGATCGAAAGCAAGCAGTGCAAAGAGTACAAAAGGGCATTCCTGTCCAATTTGCTACAGAGTTTTTCCATCAGGGCAAGCATTGGGAGGGCACAAGAGATCGATCCATTTGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

415

Amino Acids

46.26

Weight (kDa)

9.19

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	97 - 119	5.1e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	344 - 368	8.2e-13	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14270 FvH4_5g14274
malus_domestica	MD06G1199800.v1.1 MD14G1209000.v1.1
prunus_persica	Prupe.5G201400_v2.0.a1
pyrus_communis	pycom06g17660 pycom14g17280
rosa_chinensis	RchiOBHm_Chr7g0182641
rosa_laevigata	RLG00000005112
rosa_multiflora	Rmu_sc0005811.1_g000012 Rmu_sc0027411.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271100
rosa_rugosa	Rorug06G0448700
rosa_samantha	Rh7AG052600 Rh7BG052200 Rh7CG053700 Rh7DG051900
rosa_wichuraiana	Rw7G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	6 cut(s)	60, 135, 248, 636, 716, 849
AclWI	GGATC	2 cut(s)	60, 1223
AcsI	RAATTY	1 cut(s)	1028
AcuI	CTGAAG	2 cut(s)	773, 1011
AfaI	GTAC	7 cut(s)	485, 651, 810, 887, 1039, 1067, 1154
AfiI	CCNNNNNNNGG	2 cut(s)	109, 155
AgsI	TTSAA	5 cut(s)	22, 386, 519, 748, 858
AhlI	ACTAGT	1 cut(s)	965
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	6 cut(s)	51, 127, 326, 381, 974, 1073
AluI	AGCT	6 cut(s)	51, 127, 326, 381, 974, 1073
Alw26I	GTCTC	3 cut(s)	235, 257, 560
AlwI	GGATC	2 cut(s)	60, 1223
Ama87I	CYCGRG	1 cut(s)	786
AoxI	GGCC	1 cut(s)	1081
ApeKI	GCWGC	2 cut(s)	437, 440
ApoI	RAATTY	1 cut(s)	1028
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	204
AsuII	TTCGAA	2 cut(s)	927, 1032
AvaI	CYCGRG	1 cut(s)	786
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	1219
BbvI	GCAGC	2 cut(s)	424, 427
BccI	CCATC	3 cut(s)	703, 839, 1202
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	235, 257, 560
BcuI	ACTAGT	1 cut(s)	965
BfaI	CTAG	4 cut(s)	408, 803, 812, 966
BfmI	CTRYAG	1 cut(s)	1181
BisI	GCNGC	4 cut(s)	61, 136, 438, 441
BlsI	GCNGC	4 cut(s)	62, 137, 439, 442
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	783, 877
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	3 cut(s)	597, 967, 1103
BmuI	ACTGGG	1 cut(s)	640
Bpu14I	TTCGAA	2 cut(s)	927, 1032
BpuEI	CTTGAG	1 cut(s)	877
BpuMI	CCSGG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	1227
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 155
Bse1I	ACTGG	1 cut(s)	635
Bse21I	CCTNAGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	1227
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	1118
BseLI	CCNNNNNNNGG	2 cut(s)	109, 155
BseMII	CTCAG	3 cut(s)	229, 366, 561
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	2 cut(s)	198, 275
BseSI	GKGCMC	1 cut(s)	1219
BseXI	GCAGC	2 cut(s)	424, 427
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	1064
BshFI	GGCC	1 cut(s)	1083
BshVI	ATCGAT	1 cut(s)	1227
BsiEI	CGRYCG	1 cut(s)	1064
BsiHKCI	CYCGRG	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	110, 204
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	2 cut(s)	109, 155
BsmAI	GTCTC	3 cut(s)	235, 257, 560
BsmFI	GGGAC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	1163
BsnI	GGCC	1 cut(s)	1083
BsoBI	CYCGRG	1 cut(s)	786
Bsp119I	TTCGAA	2 cut(s)	927, 1032
Bsp1286I	GDGCHC	1 cut(s)	1219
Bsp143I	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
BspACI	CCGC	6 cut(s)	60, 135, 248, 636, 716, 849
BspANI	GGCC	1 cut(s)	1083
BspCNI	CTCAG	3 cut(s)	228, 365, 562
BspDI	ATCGAT	1 cut(s)	1227
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	783, 877
BspPI	GGATC	2 cut(s)	60, 1223
BspQI	GCTCTTC	1 cut(s)	844
BspT104I	TTCGAA	2 cut(s)	927, 1032
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
BssT1I	CCWWGG	1 cut(s)	69
Bst6I	CTCTTC	3 cut(s)	511, 579, 844
BstAPI	GCANNNNNTGC	2 cut(s)	39, 1143
BstBI	TTCGAA	2 cut(s)	927, 1032
BstC8I	GCNNGC	2 cut(s)	1139, 1204
BstDEI	CTNAG	3 cut(s)	215, 352, 570
BstF5I	GGATG	1 cut(s)	1118
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	9 cut(s)	13, 68, 464, 909, 1064, 1107, 1131, 1227, 1231
BstMAI	GTCTC	3 cut(s)	235, 257, 560
BstMBI	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
BstMCI	CGRYCG	1 cut(s)	1064
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 48, 57, 1143
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	1181
BstSLI	GKGCMC	1 cut(s)	1219
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	424, 427
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	1239
BstYI	RGATCY	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	1227
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	1083
BsuTUI	ATCGAT	1 cut(s)	1227
BtsCI	GGATG	1 cut(s)	1118
BtsI	GCAGTG	1 cut(s)	1148
BtsIMutI	CAGTG	2 cut(s)	628, 1148
Cac8I	GCNNGC	2 cut(s)	1139, 1204
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	1227
Csp6I	GTAC	7 cut(s)	484, 650, 809, 886, 1038, 1066, 1153
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	4 cut(s)	82, 340, 392, 487
CviQI	GTAC	7 cut(s)	484, 650, 809, 886, 1038, 1066, 1153
DdeI	CTNAG	3 cut(s)	215, 352, 570
DpnI	GATC	9 cut(s)	12, 67, 463, 908, 1063, 1106, 1130, 1226, 1230
DpnII	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
Eam1104I	CTCTTC	3 cut(s)	511, 579, 844
EarI	CTCTTC	3 cut(s)	511, 579, 844
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	773, 1011
Eco81I	CCTNAGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	786
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	85, 343, 395, 490
FaiI	YATR	9 cut(s)	27, 83, 341, 393, 488, 596, 657, 1003, 1086
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	4 cut(s)	81, 339, 391, 486
FauI	CCCGC	2 cut(s)	629, 842
Fnu4HI	GCNGC	4 cut(s)	61, 136, 438, 441
FokI	GGATG	1 cut(s)	1125
Fsp4HI	GCNGC	4 cut(s)	61, 136, 438, 441
FspBI	CTAG	4 cut(s)	408, 803, 812, 966
GluI	GCNGC	4 cut(s)	61, 136, 438, 441
HaeIII	GGCC	1 cut(s)	1083
HapII	CCGG	2 cut(s)	110, 204
Hin1II	CATG	4 cut(s)	85, 343, 395, 490
HinfI	GANTC	7 cut(s)	223, 243, 620, 625, 689, 797, 986
HpaII	CCGG	2 cut(s)	110, 204
Hpy166II	GTNNAC	1 cut(s)	1013
Hpy188III	TCNNGA	4 cut(s)	14, 278, 665, 788
Hpy8I	GTNNAC	1 cut(s)	1013
HpyAV	CCTTC	2 cut(s)	389, 809
HpyCH4V	TGCA	5 cut(s)	33, 42, 1005, 1047, 1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 48, 57, 1143
HpyF3I	CTNAG	3 cut(s)	215, 352, 570
Hsp92II	CATG	4 cut(s)	85, 343, 395, 490
Kzo9I	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
LguI	GCTCTTC	1 cut(s)	844
LmnI	GCTCC	3 cut(s)	448, 491, 781
Lsp1109I	GCAGC	2 cut(s)	424, 427
LweI	GCATC	3 cut(s)	597, 967, 1103
MaeI	CTAG	4 cut(s)	408, 803, 812, 966
MaeIII	GTNAC	5 cut(s)	77, 206, 335, 626, 1094
MalI	GATC	9 cut(s)	12, 67, 463, 908, 1063, 1106, 1130, 1226, 1230
MboI	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
MfeI	CAATTG	2 cut(s)	519, 711
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	1219
MluCI	AATT	9 cut(s)	511, 519, 644, 673, 711, 869, 929, 1028, 1174
MlyI	GAGTC	3 cut(s)	237, 634, 806
MmeI	TCCRAC	2 cut(s)	903, 918
MseI	TTAA	3 cut(s)	144, 641, 723
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	2 cut(s)	110, 204
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	2 cut(s)	519, 711
Mva1269I	GAATGC	1 cut(s)	1163
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	4 cut(s)	39, 48, 57, 1143
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
NlaIII	CATG	4 cut(s)	85, 343, 395, 490
NlaIV	GGNNCC	2 cut(s)	783, 877
NmuCI	GTSAC	4 cut(s)	77, 335, 626, 1094
NspV	TTCGAA	2 cut(s)	927, 1032
PaeR7I	CTCGAG	1 cut(s)	786
PciSI	GCTCTTC	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PctI	GAATGC	1 cut(s)	1163
PfeI	GAWTC	4 cut(s)	223, 620, 689, 986
PkrI	GCNGC	4 cut(s)	62, 137, 439, 442
Ple19I	CGATCG	1 cut(s)	1064
PleI	GAGTC	3 cut(s)	237, 633, 805
PpsI	GAGTC	3 cut(s)	237, 633, 805
PspN4I	GGNNCC	2 cut(s)	783, 877
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	1064
RsaI	GTAC	7 cut(s)	485, 651, 810, 887, 1039, 1067, 1154
RsaNI	GTAC	7 cut(s)	484, 650, 809, 886, 1038, 1066, 1153
SapI	GCTCTTC	1 cut(s)	844
SaqAI	TTAA	3 cut(s)	144, 641, 723
SatI	GCNGC	4 cut(s)	61, 136, 438, 441
Sau3AI	GATC	9 cut(s)	10, 65, 461, 906, 1061, 1104, 1128, 1224, 1228
Sau96I	GGNCC	1 cut(s)	188
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	3 cut(s)	237, 634, 806
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	1219
SfaNI	GCATC	3 cut(s)	597, 967, 1103
SfcI	CTRYAG	1 cut(s)	1181
Sfr274I	CTCGAG	1 cut(s)	786
SfuI	TTCGAA	2 cut(s)	927, 1032
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	786
SmlI	CTYRAG	2 cut(s)	786, 892
SmoI	CTYRAG	2 cut(s)	786, 892
SpeI	ACTAGT	1 cut(s)	965
Sse9I	AATT	9 cut(s)	511, 519, 644, 673, 711, 869, 929, 1028, 1174
SsiI	CCGC	6 cut(s)	60, 135, 248, 636, 716, 849
SspMI	CTAG	4 cut(s)	408, 803, 812, 966
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	69
TasI	AATT	9 cut(s)	511, 519, 644, 673, 711, 869, 929, 1028, 1174
TatI	WGTACW	4 cut(s)	808, 885, 1037, 1152
TauI	GCSGC	2 cut(s)	63, 138
TfiI	GAWTC	4 cut(s)	223, 620, 689, 986
Tru1I	TTAA	3 cut(s)	144, 641, 723
Tru9I	TTAA	3 cut(s)	144, 641, 723
TscAI	CASTG	2 cut(s)	635, 1148
TseFI	GTSAC	4 cut(s)	77, 335, 626, 1094
TseI	GCWGC	2 cut(s)	437, 440
Tsp45I	GTSAC	4 cut(s)	77, 335, 626, 1094
TspDTI	ATGAA	4 cut(s)	98, 356, 408, 753
TspRI	CASTG	2 cut(s)	635, 1148
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	1028
XhoI	CTCGAG	1 cut(s)	786
XspI	CTAG	4 cut(s)	408, 803, 812, 966
ZrmI	AGTACT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.