pycom14g17500

histone deacetylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
19412238 .. 19415465
3228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1413 bp
ATGGGATTTTGTCTGTACAACAATGTAGCTATTGCAGCAAGTGTCCTTTTAAATGAAAAACCAGAATTGGGTATCAACAAAATTTTGATCGTTGACTGGGATGTGCATCATGGTAACGGTACTCAAAAGATGTTCTGGAAGGATCCTCGTGTTTTATTCTTCTCTGTTCATAGGCATGAGTTTGGAAGTTTTTATCCAGCTAATGATGACGGTTTCTATACTATGATTGGAGAAGGAGCAGGCGCAGGATACAACATTAATGTCCCCTGGGAAAATGCCGGGTGTGGGGATGCAGACTATTTTGCCGTTTGGGACCATATTTTGGTTCATGTTGCCAAGGAGTTTAATCCCGATTTAATTATAGTCTCTGCAGGATTTGATGCAGCTGCTGGTGATCCTCTAGGGGGTTGTCGTGTCACACCATATGGATACGCAGTTTTGTTGAAAAAGTTGATGAGTTTTGCGAATGGAAAAATCGTGTTGGCTTTAGAAGGAGGATACAATCTCAAGTCTATTGCAAATTCAACTCTTTCTTGTGTTAAAGTTCTGCTGGACGACAATCCTATACATGGGTCTTCAGATGCATACCCATTTGGGTCTACATGGCGTGTGATAAAAGCGGTTCGCCGGAAACTAAGTGCTTTCTGGCCATCACTTGCAGATGAATTACCAGAGACGCTAACCAATCAAACAGCTCCTCCAGCTTCGCATATTCTCACCTCAAGCTCTGATTCTGAAGCGGAGGACAATGAAGGTCCAAATGTCATACCTAAACATCTTGAGGAGGTTTTTCAAGATGTTATAGAGCCCTTCTCGAAGTTGAAAGTTGACGAAAGTATTCAAGGTGGACAGATGGAAGGTATGAAAAGGCCATATCTTGGTTGTGCGGACAAGACTCCCCCAAAGGAGATTATGTGGAAGACCTTCCCTCATCGCTTGTTCTTTGGTCGTGAATCTACACTTACATGGGGTCCTGGAGGAGTCGCTTTCCTTAATCCCGAAAGCAACATCCAGGATAAGACTTATATGTGCCTGTATAGAATTACGCTTGAGCAGTTTAACGATGTAATAGTCCAGGAAAACGTTGCAAGTTTTCCTATGAACTCTCCTTTGTTTGACTTGGCTGGTTTAGACTCAGTCATTAGTGAGGAGCCTCATTCTCTACAGGTTCAACTAAAGAAGTGTTGGTACGGTAATGTTATCTACTTGGGCAAGGAGCATGCTATTCCGATACTAACAATGACGTGTGCAAAATCACAAATGGAGGGCTTCAAATCCGGGGAGATTCCCTTGTGTGCTCCGGCCAAAAATTATGTCAACACAATCGCAAGGGGCTTGGTGGAAGGAAAACAACTTTCGCACGAGGCGGCTATGGCTTACTTACAAAAAGCTTCTGTTAACCCATGGGGATGA

Protein Analysis

471

Amino Acids

51.85

Weight (kDa)

5.42

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 1 - 182 9.2e-62 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 322, 878
AccI GTMKAC 1 cut(s) 599
AciI CCGC 4 cut(s) 620, 740, 887, 1367
AclI AACGTT 1 cut(s) 1083
AclWI GGATC 3 cut(s) 137, 150, 389
AcoI YGGCCR 2 cut(s) 647, 1302
AcsI RAATTY 2 cut(s) 81, 520
AcuI CTGAAG 2 cut(s) 561, 756
AfaI GTAC 3 cut(s) 17, 121, 1190
AfiI CCNNNNNNNGG 6 cut(s) 68, 285, 322, 404, 569, 878
AflIII ACRYGT 1 cut(s) 1244
AgsI TTSAA 7 cut(s) 445, 525, 794, 823, 842, 1172, 1273
AjiI CACGTC 1 cut(s) 1245
AjnI CCWGG 4 cut(s) 266, 973, 1011, 1074
AluBI AGCT 7 cut(s) 29, 200, 386, 695, 704, 726, 1391
AluI AGCT 7 cut(s) 29, 200, 386, 695, 704, 726, 1391
Alw21I GWGCWC 1 cut(s) 1300
Alw26I GTCTC 2 cut(s) 370, 668
AlwI GGATC 3 cut(s) 137, 150, 389
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 3 cut(s) 647, 869, 1302
ApeKI GCWGC 3 cut(s) 35, 383, 386
ApoI RAATTY 2 cut(s) 81, 520
ArsI GACNNNNNNTTYG 2 cut(s) 1299, 1331
AseI ATTAAT 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 837, 923
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 313, 755, 971
AsuC2I CCSGG 2 cut(s) 280, 1279
AsuHPI GGTGA 2 cut(s) 404, 709
AvaII GGWCC 3 cut(s) 313, 755, 971
BalI TGGCCA 1 cut(s) 649
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 810
BarI GAAGNNNNNNTAC 2 cut(s) 1172, 1204
BauI CACGAG 2 cut(s) 147, 1361
BbsI GAAGAC 2 cut(s) 567, 926
Bbv12I GWGCWC 1 cut(s) 1300
BbvI GCAGC 3 cut(s) 47, 373, 395
BccI CCATC 2 cut(s) 658, 847
BceAI ACGGC 1 cut(s) 290
BciT130I CCWGG 4 cut(s) 268, 975, 1013, 1076
BciVI GTATCC 3 cut(s) 242, 422, 491
BcnI CCSGG 2 cut(s) 280, 1279
BcoDI GTCTC 2 cut(s) 370, 668
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 2 cut(s) 369, 1163
BfuI GTATCC 3 cut(s) 242, 422, 491
BisI GCNGC 4 cut(s) 36, 384, 387, 1368
BlsI GCNGC 4 cut(s) 37, 385, 388, 1369
Bme1390I CCNGG 6 cut(s) 268, 280, 975, 1013, 1076, 1279
Bme18I GGWCC 3 cut(s) 313, 755, 971
BmgBI CACGTC 1 cut(s) 1245
BmgT120I GGNCC 3 cut(s) 313, 755, 971
BmiI GGNNCC 4 cut(s) 144, 314, 972, 1152
BmrFI CCNGG 6 cut(s) 268, 280, 975, 1013, 1076, 1279
BmrI ACTGGG 1 cut(s) 106
BmsI GCATC 4 cut(s) 115, 280, 370, 571
BmuI ACTGGG 1 cut(s) 106
BpiI GAAGAC 2 cut(s) 567, 926
BplI GAGNNNNNCTC 2 cut(s) 797, 829
BpmI CTGGAG 2 cut(s) 684, 996
BpuEI CTTGAG 4 cut(s) 491, 706, 800, 1070
BpuMI CCSGG 2 cut(s) 280, 1279
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 5 cut(s) 266, 267, 336, 1278, 1403
BsaXI ACNNNNNCTCC 4 cut(s) 682, 712, 899, 929
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 285, 322, 404, 569, 878
Bse1I ACTGG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 4 cut(s) 268, 975, 1013, 1076
BseDI CCNNGG 5 cut(s) 266, 267, 336, 1278, 1403
BseGI GGATG 3 cut(s) 106, 295, 1008
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 6 cut(s) 68, 285, 322, 404, 569, 878
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 4 cut(s) 687, 797, 993, 1163
BseXI GCAGC 3 cut(s) 47, 373, 395
BshFI GGCC 3 cut(s) 649, 871, 1304
BsiHKAI GWGCWC 1 cut(s) 1300
BsiSI CCGG 4 cut(s) 279, 628, 1278, 1301
BslFI GGGAC 2 cut(s) 248, 326
BslI CCNNNNNNNGG 6 cut(s) 68, 285, 322, 404, 569, 878
BsmAI GTCTC 2 cut(s) 370, 668
BsmBI CGTCTC 1 cut(s) 668
BsmFI GGGAC 2 cut(s) 248, 326
BsnI GGCC 3 cut(s) 649, 871, 1304
Bsp1286I GDGCHC 2 cut(s) 810, 1300
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 87, 142, 394
Bsp19I CCATGG 1 cut(s) 1403
BspACI CCGC 4 cut(s) 620, 740, 887, 1367
BspANI GGCC 3 cut(s) 649, 871, 1304
BspCNI CTCAG 1 cut(s) 1148
BspLI GGNNCC 4 cut(s) 144, 314, 972, 1152
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 3 cut(s) 137, 150, 389
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 5 cut(s) 266, 267, 336, 1278, 1403
BssMI GATC 3 cut(s) 87, 142, 394
BssSI CACGAG 2 cut(s) 147, 1361
BssT1I CCWWGG 2 cut(s) 336, 1403
Bst2BI CACGAG 2 cut(s) 147, 1361
Bst2UI CCWGG 4 cut(s) 268, 975, 1013, 1076
Bst4CI ACNGT 3 cut(s) 119, 212, 1193
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 241, 1221
BstDEI CTNAG 2 cut(s) 635, 1135
BstDSI CCRYGG 1 cut(s) 1403
BstF5I GGATG 3 cut(s) 106, 295, 1008
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 3 cut(s) 90, 145, 397
BstMAI GTCTC 2 cut(s) 370, 668
BstMBI GATC 3 cut(s) 87, 142, 394
BstMWI GCNNNNNNNGC 3 cut(s) 35, 701, 1373
BstNI CCWGG 4 cut(s) 268, 975, 1013, 1076
BstNSI RCATGY 1 cut(s) 1223
BstSCI CCNGG 6 cut(s) 266, 278, 973, 1011, 1074, 1277
BstSFI CTRYAG 2 cut(s) 369, 1163
BstV1I GCAGC 3 cut(s) 47, 373, 395
BstV2I GAAGAC 2 cut(s) 567, 926
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 3 cut(s) 242, 422, 491
BsuRI GGCC 3 cut(s) 649, 871, 1304
BtgI CCRYGG 1 cut(s) 1403
BtgZI GCGATG 1 cut(s) 917
BtrI CACGTC 1 cut(s) 1245
BtsCI GGATG 3 cut(s) 106, 295, 1008
Cac8I GCNNGC 2 cut(s) 241, 1221
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 313, 755, 971
CseI GACGC 1 cut(s) 685
Csp6I GTAC 3 cut(s) 16, 120, 1189
CviAII CATG 8 cut(s) 110, 176, 329, 569, 603, 966, 1220, 1404
CviQI GTAC 3 cut(s) 16, 120, 1189
DdeI CTNAG 2 cut(s) 635, 1135
DpnI GATC 3 cut(s) 89, 144, 396
DpnII GATC 3 cut(s) 87, 142, 394
DraI TTTAAA 1 cut(s) 51
EaeI YGGCCR 2 cut(s) 647, 1302
Eco130I CCWWGG 2 cut(s) 336, 1403
Eco24I GRGCYC 1 cut(s) 810
Eco47I GGWCC 3 cut(s) 313, 755, 971
Eco57I CTGAAG 2 cut(s) 561, 756
EcoO109I RGGNCCY 1 cut(s) 971
EcoRII CCWGG 4 cut(s) 266, 973, 1011, 1074
EcoT14I CCWWGG 2 cut(s) 336, 1403
EcoT22I ATGCAT 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 336, 1403
Esp3I CGTCTC 1 cut(s) 668
FaeI CATG 8 cut(s) 113, 179, 332, 572, 606, 969, 1223, 1407
FaqI GGGAC 2 cut(s) 248, 326
FatI CATG 8 cut(s) 109, 175, 328, 568, 602, 965, 1219, 1403
FauNDI CATATG 1 cut(s) 424
FblI GTMKAC 1 cut(s) 599
Fnu4HI GCNGC 4 cut(s) 36, 384, 387, 1368
FokI GGATG 3 cut(s) 113, 302, 995
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 4 cut(s) 36, 384, 387, 1368
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 244
GluI GCNGC 4 cut(s) 36, 384, 387, 1368
GsuI CTGGAG 2 cut(s) 684, 996
HaeIII GGCC 3 cut(s) 649, 871, 1304
HapII CCGG 4 cut(s) 279, 628, 1278, 1301
HgaI GACGC 1 cut(s) 685
HhaI GCGC 1 cut(s) 245
Hin1II CATG 8 cut(s) 113, 179, 332, 572, 606, 969, 1223, 1407
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 4 cut(s) 94, 829, 1318, 1399
HindII GTYRAC 4 cut(s) 94, 829, 1318, 1399
HindIII AAGCTT 1 cut(s) 1389
HinfI GANTC 6 cut(s) 731, 895, 953, 981, 1133, 1285
HpaI GTTAAC 1 cut(s) 1399
HpaII CCGG 4 cut(s) 279, 628, 1278, 1301
HphI GGTGA 2 cut(s) 404, 709
Hpy166II GTNNAC 6 cut(s) 94, 600, 829, 848, 1318, 1399
Hpy188I TCNGA 4 cut(s) 580, 730, 736, 1230
Hpy188III TCNNGA 7 cut(s) 136, 350, 779, 794, 814, 950, 998
Hpy8I GTNNAC 6 cut(s) 94, 600, 829, 848, 1318, 1399
HpyAV CCTTC 8 cut(s) 133, 227, 485, 746, 820, 851, 934, 1337
HpyCH4III ACNGT 3 cut(s) 119, 212, 1193
HpyCH4IV ACGT 2 cut(s) 1083, 1244
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 701, 1373
HpyF3I CTNAG 2 cut(s) 635, 1135
HpySE526I ACGT 2 cut(s) 1083, 1244
Hsp92II CATG 8 cut(s) 113, 179, 332, 572, 606, 969, 1223, 1407
HspAI GCGC 1 cut(s) 243
KspAI GTTAAC 1 cut(s) 1399
Kzo9I GATC 3 cut(s) 87, 142, 394
LmnI GCTCC 5 cut(s) 236, 700, 1150, 1216, 1303
Lsp1109I GCAGC 3 cut(s) 47, 373, 395
LweI GCATC 4 cut(s) 115, 280, 370, 571
MaeI CTAG 1 cut(s) 401
MaeII ACGT 2 cut(s) 1083, 1244
MaeIII GTNAC 2 cut(s) 113, 415
MalI GATC 3 cut(s) 89, 144, 396
MboI GATC 3 cut(s) 87, 142, 394
MboII GAAGA 3 cut(s) 151, 567, 931
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 810, 1300
MlsI TGGCCA 1 cut(s) 649
MluCI AATT 7 cut(s) 65, 81, 357, 520, 665, 1041, 1309
MluNI TGGCCA 1 cut(s) 649
MlyI GAGTC 3 cut(s) 889, 990, 1127
Mox20I TGGCCA 1 cut(s) 649
Mph1103I ATGCAT 1 cut(s) 586
MroXI GAANNNNTTC 2 cut(s) 837, 923
MscI TGGCCA 1 cut(s) 649
MseI TTAA 8 cut(s) 50, 258, 345, 356, 540, 993, 1059, 1398
MslI CAYNNNNRTG 3 cut(s) 174, 964, 1408
Msp20I TGGCCA 1 cut(s) 649
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 4 cut(s) 279, 628, 1278, 1301
MspR9I CCNGG 6 cut(s) 268, 280, 975, 1013, 1076, 1279
MvaI CCWGG 4 cut(s) 268, 975, 1013, 1076
MwoI GCNNNNNNNGC 3 cut(s) 35, 701, 1373
NciI CCSGG 2 cut(s) 280, 1279
NcoI CCATGG 1 cut(s) 1403
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 87, 142, 394
NlaIII CATG 8 cut(s) 113, 179, 332, 572, 606, 969, 1223, 1407
NlaIV GGNNCC 4 cut(s) 144, 314, 972, 1152
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 1223
PaeI GCATGC 1 cut(s) 1223
PasI CCCWGGG 1 cut(s) 267
PdmI GAANNNNTTC 2 cut(s) 837, 923
PfeI GAWTC 3 cut(s) 731, 953, 1285
PflFI GACNNNGTC 1 cut(s) 1136
PflMI CCANNNNNTGG 2 cut(s) 322, 878
PfoI TCCNGGA 3 cut(s) 973, 1011, 1074
PkrI GCNGC 4 cut(s) 37, 385, 388, 1369
PleI GAGTC 3 cut(s) 889, 989, 1127
PpsI GAGTC 3 cut(s) 889, 989, 1127
PpuMI RGGWCCY 1 cut(s) 971
PshBI ATTAAT 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 971
Psp6I CCWGG 4 cut(s) 266, 973, 1011, 1074
PspGI CCWGG 4 cut(s) 266, 973, 1011, 1074
PspN4I GGNNCC 4 cut(s) 144, 314, 972, 1152
PspPI GGNCC 3 cut(s) 313, 755, 971
PspPPI RGGWCCY 1 cut(s) 971
PstI CTGCAG 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 1136
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 3 cut(s) 17, 121, 1190
RsaNI GTAC 3 cut(s) 16, 120, 1189
RseI CAYNNNNRTG 3 cut(s) 174, 964, 1408
SaqAI TTAA 8 cut(s) 50, 258, 345, 356, 540, 993, 1059, 1398
SatI GCNGC 4 cut(s) 36, 384, 387, 1368
Sau3AI GATC 3 cut(s) 87, 142, 394
Sau96I GGNCC 3 cut(s) 313, 755, 971
SchI GAGTC 3 cut(s) 889, 990, 1127
ScrFI CCNGG 6 cut(s) 268, 280, 975, 1013, 1076, 1279
SduI GDGCHC 2 cut(s) 810, 1300
SfaNI GCATC 4 cut(s) 115, 280, 370, 571
SfcI CTRYAG 2 cut(s) 369, 1163
SinI GGWCC 3 cut(s) 313, 755, 971
SmiMI CAYNNNNRTG 3 cut(s) 174, 964, 1408
SmlI CTYRAG 4 cut(s) 506, 721, 779, 1049
SmoI CTYRAG 4 cut(s) 506, 721, 779, 1049
SphI GCATGC 1 cut(s) 1223
Sse9I AATT 7 cut(s) 65, 81, 357, 520, 665, 1041, 1309
SsiI CCGC 4 cut(s) 620, 740, 887, 1367
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 6 cut(s) 266, 278, 973, 1011, 1074, 1277
StyI CCWWGG 2 cut(s) 336, 1403
TaaI ACNGT 3 cut(s) 119, 212, 1193
TaiI ACGT 2 cut(s) 1086, 1247
TaqI TCGA 1 cut(s) 815
TasI AATT 7 cut(s) 65, 81, 357, 520, 665, 1041, 1309
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 1370
TfiI GAWTC 3 cut(s) 731, 953, 1285
Tru1I TTAA 8 cut(s) 50, 258, 345, 356, 540, 993, 1059, 1398
Tru9I TTAA 8 cut(s) 50, 258, 345, 356, 540, 993, 1059, 1398
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 3 cut(s) 35, 383, 386
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 7 cut(s) 69, 158, 317, 678, 765, 878, 1115
Tth111I GACNNNGTC 1 cut(s) 1136
Van91I CCANNNNNTGG 2 cut(s) 322, 878
VpaK11BI GGWCC 3 cut(s) 313, 755, 971
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 2 cut(s) 81, 520
XceI RCATGY 1 cut(s) 1223
XmiI GTMKAC 1 cut(s) 599
XmnI GAANNNNTTC 2 cut(s) 837, 923
XspI CTAG 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.