pycom14g17790

COBRA-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
19605755 .. 19608479
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGGAGCCTCAGTGCTTCTCAGCCGTTGGATCCATAGCCAAGCTCACCAGCTTCACCATTCTGCTCGCCTTCTTGCTTTCCTGCTTCAGTTTTACTTCTACAGAAGCCTATGATGCTCTTGATCCAACTGGGAATATCACGATTAAATGGGATGTCATCAGCTGGACTCCGGATGGTTATGTTGCAGTAGTTACAATGTTTAACTTCCAGCAGTATCGACATATACAAGCGCCAGGTTGGACTTTGGGATGGACATGGGCGAAAAAGGAAGTAATCTGGAGCATGGTGGGAGCACAAACAACAGAACAAGGGGATTGCTCAAAATACAAGGGGAACGTCCCACATTGCTGTAAAAAGGATCCCACAGTTGTGGATTTGTTGCCTGGAACCCCCTACAATCAGCAGATTGCAAACTGCTGCAAGGGGGGAGTCATGCAATCGTGGATCCAGGACCCACCCAATGCCATAAGTTCGTTTCAGGTAAGTGTGGGTGCTGCTGGAACAACGAACAAAACTGTCAGACTGCCGAAAAACTTCACATTGAGAGCACCAGGGCCTGGATATTCTTGTGGGATAGCAAAGATTGTTAAACCAACCAGATTTCTAACCTCGGACAAAAGGAGATGGACCCAAGCCATGATGACCTGGAACGTTACATGCACGTACTCGCAGTTTCTAGCTCAAAAGACACCCACGTGTTGTGTTTCGCTCTCCTCCTTCTACAATGAAACCATAGTGAGCTGTCCCACTTGTGCCTGTGGCTGCCAGAACAACGCTACAGACCCAGGAAGCTGTGTAGAGCCAAAGAATCCATACTTAGCTTCAGCTGTAGCTGGTTCCGGGAAATCTGCTAACACTCCTCTAGTCCAGTGTACCAGTCATATGTGTCCAATCCGAGTACATTGGCATGTTAAGCTCAATTACAAGGATTACTGGAGGGTGAAAGTCACAATTACAAATTTCAATTACAGAATGAACTACACGCTGTGGAATCTTGTCGTGCAACATCCAAACTTTGATAATTTGACCAAGATTTTCAGTTTCAATTACAAGTCATTAACTCCTTATGTTGGCTTAAATGATACAGCCATGTTGTGGGGAGTAAAGTTTTATAACGATTTCCTCTCGGAAGCTGGTCCACTTGGAAATGTGCAGTCAGAGCTCCTATTTCGAAAGGATACGTCAACTTTTACTTTTGAAAAGGGTTGGGCTTTTCCTCGAAGGATTTATTTCAACGGAGACAACTGTGTAATGCCACCTCCGGATGCCTACCCATGGTTGCCGAATGCCAGTCCCAAACGTATTATTAGCATACTTGGTCCAGTCATGACTGCCTTCGCATCTCTGGTAATCTTATTGGCTTATGCGTAG

Protein Analysis

457

Amino Acids

50.86

Weight (kDa)

8.92

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COBRA PF04833 60 - 223 1.6e-68 COBRA-like protein
COB_C PF25079 232 - 425 2.7e-62 COBRA family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60920 AT5G60920
fragaria_vesca FvH4_5g13550
malus_domestica MD06G1203700.v1.1 MD14G1214800.v1.1
prunus_persica Prupe.5G207800_v2.0.a1
pyrus_communis pycom06g18190 pycom14g17790
rosa_chinensis RchiOBHm_Chr7g0183381
rosa_laevigata RLG00000005051
rosa_multiflora Rmu_sc0000951.1_g000012
rosa_roxburghii Rroxscaffold_3G00270490
rosa_rugosa Rorug06G0457600
rosa_samantha Rh7AG058700 Rh7BG058700 Rh7DG058400
rosa_wichuraiana Rw7G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AccB7I CCANNNNNTGG 2 cut(s) 557, 1095
AccIII TCCGGA 2 cut(s) 169, 1261
AclI AACGTT 1 cut(s) 651
AclWI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
AcsI RAATTY 1 cut(s) 958
AcuI CTGAAG 2 cut(s) 70, 807
AcvI CACGTG 1 cut(s) 696
AdeI CACNNNGTG 1 cut(s) 987
AfaI GTAC 3 cut(s) 665, 874, 900
AfiI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
AflIII ACRYGT 1 cut(s) 695
AgsI TTSAA 4 cut(s) 964, 1045, 1199, 1234
AjnI CCWGG 7 cut(s) 232, 382, 447, 550, 556, 644, 784
AleI CACNNNNGTG 2 cut(s) 368, 694
Alw21I GWGCWC 3 cut(s) 295, 550, 1164
Alw26I GTCTC 1 cut(s) 1233
AlwI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
AlwNI CAGNNNCTG 1 cut(s) 557
Aor13HI TCCGGA 2 cut(s) 169, 1261
AoxI GGCC 1 cut(s) 554
ApeKI GCWGC 3 cut(s) 417, 494, 762
ApoI RAATTY 1 cut(s) 958
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 5 cut(s) 451, 554, 627, 1136, 1319
AsuC2I CCSGG 1 cut(s) 841
AsuHPI GGTGA 3 cut(s) 37, 46, 952
AsuII TTCGAA 1 cut(s) 1171
AvaII GGWCC 4 cut(s) 451, 627, 1136, 1319
BamHI GGATCC 3 cut(s) 29, 358, 444
BanII GRGCYC 1 cut(s) 1164
BbrPI CACGTG 1 cut(s) 696
Bbv12I GWGCWC 3 cut(s) 295, 550, 1164
BbvI GCAGC 3 cut(s) 404, 481, 749
BccI CCATC 3 cut(s) 167, 243, 618
BceAI ACGGC 1 cut(s) 8
BciT130I CCWGG 7 cut(s) 234, 384, 449, 552, 558, 646, 786
BciVI GTATCC 1 cut(s) 1171
BcnI CCSGG 1 cut(s) 841
BcoDI GTCTC 1 cut(s) 1233
BfaI CTAG 2 cut(s) 677, 863
BfmI CTRYAG 3 cut(s) 99, 777, 828
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 1 cut(s) 1171
BisI GCNGC 3 cut(s) 418, 495, 763
BlsI GCNGC 3 cut(s) 419, 496, 764
Bme1390I CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
Bme18I GGWCC 4 cut(s) 451, 627, 1136, 1319
BmgT120I GGNCC 5 cut(s) 451, 554, 627, 1136, 1319
BmiI GGNNCC 8 cut(s) 6, 31, 360, 388, 446, 453, 629, 838
BmrFI CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 103, 1255, 1349
BmuI ACTGGG 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 298, 955
Bpu14I TTCGAA 1 cut(s) 1171
BpuMI CCSGG 1 cut(s) 841
BsaAI YACGTR 2 cut(s) 663, 696
BsaJI CCNNGG 4 cut(s) 551, 609, 784, 1274
BsaWI WCCGGW 2 cut(s) 169, 1261
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
Bse1I ACTGG 6 cut(s) 133, 868, 876, 938, 1290, 1322
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 2 cut(s) 169, 1261
BseBI CCWGG 7 cut(s) 234, 384, 449, 552, 558, 646, 786
BseDI CCNNGG 4 cut(s) 551, 609, 784, 1274
BseGI GGATG 5 cut(s) 157, 178, 254, 1006, 1270
BseLI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 23, 33
BseNI ACTGG 6 cut(s) 133, 868, 876, 938, 1290, 1322
BseRI GAGGAG 2 cut(s) 703, 849
BseXI GCAGC 3 cut(s) 404, 481, 749
BsgI GTGCAG 1 cut(s) 1172
BshFI GGCC 1 cut(s) 556
BsiHKAI GWGCWC 3 cut(s) 295, 550, 1164
BsiSI CCGG 3 cut(s) 170, 840, 1262
BslFI GGGAC 3 cut(s) 323, 729, 1278
BslI CCNNNNNNNGG 4 cut(s) 557, 1070, 1095, 1275
BsmAI GTCTC 1 cut(s) 1233
BsmFI GGGAC 3 cut(s) 323, 729, 1278
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 3 cut(s) 295, 550, 1164
Bsp13I TCCGGA 2 cut(s) 169, 1261
Bsp143I GATC 4 cut(s) 29, 121, 358, 444
Bsp19I CCATGG 1 cut(s) 1274
BspANI GGCC 1 cut(s) 556
BspCNI CTCAG 2 cut(s) 22, 32
BspEI TCCGGA 2 cut(s) 169, 1261
BspHI TCATGA 1 cut(s) 1326
BspLI GGNNCC 8 cut(s) 6, 31, 360, 388, 446, 453, 629, 838
BspPI GGATC 7 cut(s) 24, 37, 116, 353, 366, 439, 452
BspT104I TTCGAA 1 cut(s) 1171
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 6 cut(s) 133, 868, 876, 938, 1290, 1322
BssECI CCNNGG 4 cut(s) 551, 609, 784, 1274
BssMI GATC 4 cut(s) 29, 121, 358, 444
BssT1I CCWWGG 1 cut(s) 1274
Bst2UI CCWGG 7 cut(s) 234, 384, 449, 552, 558, 646, 786
Bst4CI ACNGT 3 cut(s) 367, 517, 1247
BstBAI YACGTR 2 cut(s) 663, 696
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 9, 19, 817
BstDSI CCRYGG 1 cut(s) 1274
BstF5I GGATG 5 cut(s) 157, 178, 254, 1006, 1270
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 4 cut(s) 32, 124, 361, 447
BstMAI GTCTC 1 cut(s) 1233
BstMBI GATC 4 cut(s) 29, 121, 358, 444
BstMWI GCNNNNNNNGC 3 cut(s) 113, 913, 1159
BstNI CCWGG 7 cut(s) 234, 384, 449, 552, 558, 646, 786
BstNSI RCATGY 2 cut(s) 660, 911
BstSCI CCNGG 8 cut(s) 232, 382, 447, 550, 556, 644, 784, 839
BstSFI CTRYAG 3 cut(s) 99, 777, 828
BstV1I GCAGC 3 cut(s) 404, 481, 749
BstX2I RGATCY 3 cut(s) 29, 358, 444
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 3 cut(s) 29, 358, 444
BsuI GTATCC 1 cut(s) 1171
BsuRI GGCC 1 cut(s) 556
BtgI CCRYGG 1 cut(s) 1274
BtsCI GGATG 5 cut(s) 157, 178, 254, 1006, 1270
BtsIMutI CAGTG 2 cut(s) 17, 875
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 557
CciI TCATGA 1 cut(s) 1326
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 5 cut(s) 451, 554, 627, 1136, 1319
Csp6I GTAC 3 cut(s) 664, 873, 899
CviAII CATG 9 cut(s) 255, 283, 433, 637, 657, 908, 1090, 1275, 1327
CviQI GTAC 3 cut(s) 664, 873, 899
DdeI CTNAG 3 cut(s) 9, 19, 817
DpnI GATC 4 cut(s) 31, 123, 360, 446
DpnII GATC 4 cut(s) 29, 121, 358, 444
DraIII CACNNNGTG 1 cut(s) 987
Ecl136II GAGCTC 1 cut(s) 1162
Eco130I CCWWGG 1 cut(s) 1274
Eco24I GRGCYC 1 cut(s) 1164
Eco47I GGWCC 4 cut(s) 451, 627, 1136, 1319
Eco53kI GAGCTC 1 cut(s) 1162
Eco57I CTGAAG 2 cut(s) 70, 807
Eco72I CACGTG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 1162
EcoO109I RGGNCCY 2 cut(s) 451, 554
EcoRII CCWGG 7 cut(s) 232, 382, 447, 550, 556, 644, 784
EcoT14I CCWWGG 1 cut(s) 1274
EcoT38I GRGCYC 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1274
FaeI CATG 9 cut(s) 258, 286, 436, 640, 660, 911, 1093, 1278, 1330
FaqI GGGAC 3 cut(s) 323, 729, 1278
FatI CATG 9 cut(s) 254, 282, 432, 636, 656, 907, 1089, 1274, 1326
FauNDI CATATG 1 cut(s) 882
Fnu4HI GCNGC 3 cut(s) 418, 495, 763
FokI GGATG 5 cut(s) 164, 185, 261, 993, 1277
FriOI GRGCYC 1 cut(s) 1164
Fsp4HI GCNGC 3 cut(s) 418, 495, 763
FspBI CTAG 2 cut(s) 677, 863
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 418, 495, 763
GsuI CTGGAG 2 cut(s) 298, 955
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 556
HapII CCGG 3 cut(s) 170, 840, 1262
HhaI GCGC 1 cut(s) 232
Hin1II CATG 9 cut(s) 258, 286, 436, 640, 660, 911, 1093, 1278, 1330
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 1185
HindII GTYRAC 1 cut(s) 1185
HinfI GANTC 4 cut(s) 166, 429, 808, 991
HpaII CCGG 3 cut(s) 170, 840, 1262
HphI GGTGA 3 cut(s) 37, 46, 952
Hpy166II GTNNAC 3 cut(s) 873, 1139, 1185
Hpy188I TCNGA 5 cut(s) 521, 613, 896, 1129, 1159
Hpy188III TCNNGA 6 cut(s) 119, 139, 170, 277, 1262, 1327
Hpy8I GTNNAC 3 cut(s) 873, 1139, 1185
HpyAV CCTTC 4 cut(s) 79, 727, 1215, 1345
HpyCH4III ACNGT 3 cut(s) 367, 517, 1247
HpyCH4IV ACGT 6 cut(s) 336, 651, 662, 695, 1181, 1300
HpyCH4V TGCA 7 cut(s) 185, 410, 420, 436, 660, 1003, 1153
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 913, 1159
HpyF3I CTNAG 3 cut(s) 9, 19, 817
HpySE526I ACGT 6 cut(s) 336, 651, 662, 695, 1181, 1300
Hsp92II CATG 9 cut(s) 258, 286, 436, 640, 660, 911, 1093, 1278, 1330
HspAI GCGC 1 cut(s) 230
Kpn2I TCCGGA 2 cut(s) 169, 1261
Kzo9I GATC 4 cut(s) 29, 121, 358, 444
LmnI GCTCC 4 cut(s) 4, 279, 290, 1167
Lsp1109I GCAGC 3 cut(s) 404, 481, 749
LweI GCATC 3 cut(s) 103, 1255, 1349
MaeI CTAG 2 cut(s) 677, 863
MaeII ACGT 6 cut(s) 336, 651, 662, 695, 1181, 1300
MaeIII GTNAC 3 cut(s) 190, 652, 946
MalI GATC 4 cut(s) 31, 123, 360, 446
MboI GATC 4 cut(s) 29, 121, 358, 444
MflI RGATCY 3 cut(s) 29, 358, 444
MhlI GDGCHC 3 cut(s) 295, 550, 1164
MluCI AATT 6 cut(s) 919, 951, 958, 964, 1021, 1045
MlyI GAGTC 2 cut(s) 160, 438
MmeI TCCRAC 3 cut(s) 7, 149, 218
MnlI CCTC 8 cut(s) 18, 619, 724, 870, 930, 1133, 1227, 1269
MroI TCCGGA 2 cut(s) 169, 1261
MroXI GAANNNNTTC 1 cut(s) 533
MseI TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
MslI CAYNNNNRTG 3 cut(s) 368, 694, 906
MspA1I CMGCKG 2 cut(s) 162, 827
MspI CCGG 3 cut(s) 170, 840, 1262
MspR9I CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 7 cut(s) 234, 384, 449, 552, 558, 646, 786
MwoI GCNNNNNNNGC 3 cut(s) 113, 913, 1159
NciI CCSGG 1 cut(s) 841
NcoI CCATGG 1 cut(s) 1274
NdeI CATATG 1 cut(s) 882
NdeII GATC 4 cut(s) 29, 121, 358, 444
NlaIII CATG 9 cut(s) 258, 286, 436, 640, 660, 911, 1093, 1278, 1330
NlaIV GGNNCC 8 cut(s) 6, 31, 360, 388, 446, 453, 629, 838
NmuCI GTSAC 1 cut(s) 946
NspI RCATGY 2 cut(s) 660, 911
NspV TTCGAA 1 cut(s) 1171
OliI CACNNNNGTG 2 cut(s) 368, 694
PagI TCATGA 1 cut(s) 1326
PctI GAATGC 1 cut(s) 1291
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 2 cut(s) 808, 991
PflMI CCANNNNNTGG 2 cut(s) 557, 1095
PfoI TCCNGGA 2 cut(s) 447, 839
PkrI GCNGC 3 cut(s) 419, 496, 764
PleI GAGTC 2 cut(s) 160, 437
PmaCI CACGTG 1 cut(s) 696
PmlI CACGTG 1 cut(s) 696
PpsI GAGTC 2 cut(s) 160, 437
Ppu21I YACGTR 2 cut(s) 663, 696
PpuMI RGGWCCY 1 cut(s) 451
PsiI TTATAA 1 cut(s) 1113
Psp124BI GAGCTC 1 cut(s) 1164
Psp1406I AACGTT 1 cut(s) 651
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 7 cut(s) 232, 382, 447, 550, 556, 644, 784
PspCI CACGTG 1 cut(s) 696
PspGI CCWGG 7 cut(s) 232, 382, 447, 550, 556, 644, 784
PspN4I GGNNCC 8 cut(s) 6, 31, 360, 388, 446, 453, 629, 838
PspPI GGNCC 5 cut(s) 451, 554, 627, 1136, 1319
PspPPI RGGWCCY 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 29, 358, 444
PvuII CAGCTG 2 cut(s) 162, 827
RsaI GTAC 3 cut(s) 665, 874, 900
RsaNI GTAC 3 cut(s) 664, 873, 899
RseI CAYNNNNRTG 3 cut(s) 368, 694, 906
SacI GAGCTC 1 cut(s) 1164
SaqAI TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
SatI GCNGC 3 cut(s) 418, 495, 763
Sau3AI GATC 4 cut(s) 29, 121, 358, 444
Sau96I GGNCC 5 cut(s) 451, 554, 627, 1136, 1319
SchI GAGTC 2 cut(s) 160, 438
ScrFI CCNGG 8 cut(s) 234, 384, 449, 552, 558, 646, 786, 841
SduI GDGCHC 3 cut(s) 295, 550, 1164
SfaNI GCATC 3 cut(s) 103, 1255, 1349
SfcI CTRYAG 3 cut(s) 99, 777, 828
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 4 cut(s) 451, 627, 1136, 1319
SmiMI CAYNNNNRTG 3 cut(s) 368, 694, 906
Sse9I AATT 6 cut(s) 919, 951, 958, 964, 1021, 1045
SspMI CTAG 2 cut(s) 677, 863
SstI GAGCTC 1 cut(s) 1164
StyD4I CCNGG 8 cut(s) 232, 382, 447, 550, 556, 644, 784, 839
StyI CCWWGG 1 cut(s) 1274
TaaI ACNGT 3 cut(s) 367, 517, 1247
TaiI ACGT 6 cut(s) 339, 654, 665, 698, 1184, 1303
TaqI TCGA 3 cut(s) 217, 1171, 1219
TasI AATT 6 cut(s) 919, 951, 958, 964, 1021, 1045
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 2 cut(s) 808, 991
Tru1I TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
Tru9I TTAA 6 cut(s) 144, 201, 588, 912, 1058, 1076
TscAI CASTG 2 cut(s) 17, 875
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 3 cut(s) 417, 494, 762
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 2 cut(s) 741, 989
TspGWI ACGGA 1 cut(s) 1251
TspRI CASTG 2 cut(s) 17, 875
Van91I CCANNNNNTGG 2 cut(s) 557, 1095
VpaK11BI GGWCC 4 cut(s) 451, 627, 1136, 1319
XapI RAATTY 1 cut(s) 958
XceI RCATGY 2 cut(s) 660, 911
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 2 cut(s) 677, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.