Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008073

Physical Location & Seq

Genomic Coordinates Reverse (-)

20387015 .. 20389129

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGATCGATGATCTGGTGGCTGACATCATGCGCGGCAACGAATCACTAAGGTTTTTGCCCAACAATAACCTTCAGCATCATCATCAAAAAAAAAATTCCGAAGACCAGTTCATTAGCGCACGGGAGAGCTTAATAATTGAAGAGCGCCAAGATGAATCTTTGCATGAGTCACCACAAGGTTCAGAATCTGAATATGACGATCAAGGTGTGGAGGAAATCCCAGTGAAAGAAACAGCGTCAGTTCTCAATTCTGTCGCGAATGATCGAGTGTGGTCCACATCTCCGATAACTATAGAACCACATAAAAGTGACAAAAATGGTGACGATAATTGTGATGAACACAACACTGAAATCAATAGGGCAGATCAGACGCATTTATCCGGTGACGAAAATTTTGTTGTTTATGGGCCATCACAATTGAAGAACAAGAAGTTCCAAGTTCAAAACAATAAAGAGGATGAAATTTTTGGTGACTCAACCGTTGGATCAACTTCTAAGAGCTCTTCTGAATGGAGAAGCTCAATTAACTGCAGGGATTCTGCCACTGAAGATCCTTTTTCCTCCTCGTCCCGGAGAAGCTGCCCCAAATGGGAGTCTTACACAGTCTTCCAAAAGTATGATGAAGAAATGATGTTCTTAGACAGAATTAGTGCCCAAAAGCTCCATGAAACAGAATCACTTAAGTCTATTCAAGTTTGTCCAAGATCGATTTCGGAAAGGATAGTTCATAGAATCTCTATGGCAACAAAAAGGCCGCCTGATGTACGTCACAACCCTTATCATGAGCTGGAGGCTGCTTACGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTGAGCAAAAAAGGGCATCACGACGTGATCAGTTTGATCCCGGCGTTCCTGGCGAATTAGCACAGCAATTTCAGCAATTTCAAGTGCTTCTACGAAGATATGTAGAGAATGAGCCTTATGAGCAAGGCAGGAGGCCAGAGATTTATGCTAGGATGAGGCTTTTGGCACCAAAGTTACTTCAAGTGCCAGAATATCAAGTTTCAGAAGATGGTGAGCATGAAAAGGACGAAGGTTTTGGCTCAAAAATTTCATCAGCTGCATTTTTAATGATAATGGAAGACGGAATCCGAACGTTCATGGATTTTCTCAAGGCTGATAAGATAAAACCCTGCCAGAAATTAGCATCCATGTTCAAAAGAAAACGAAAAGGTTCAGTTGATCCCACTCTTCTCCATCTGATGAAGAAAGTAAATCAAAAAAAGAAGATGAAAATCAAAGATCGTTCGACGTTCCCACAAATGCATGAGAAAGCGAAGCTTGAAGGTGGAGGAAGAGATGGGGATACTGATGGGTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1666

Protein Analysis

458

Amino Acids

52.7

Weight (kDa)

5.86

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73850 AT1G73850
fragaria_vesca	FvH4_5g12100 FvH4_5g12100 FvH4_5g12100
malus_domestica	MD06G1216400.v1.1 MD14G1226800.v1.1
prunus_persica	Prupe.5G221500_v2.0.a1 Prupe.5G221500_v2.0.a1 Prupe.5G221500_v2.0.a1 Prupe.5G221500_v2.0.a1
pyrus_communis	pycom06g19280 pycom14g18820
rosa_chinensis	RchiOBHm_Chr7g0185471
rosa_laevigata	RLG00000004910
rosa_multiflora	Rmu_sc0010190.1_g000023
rosa_roxburghii	Rroxscaffold_3G00268910
rosa_rugosa	Rorug06G0469600 Rorug06G0469700
rosa_samantha	Rh7AG073200 Rh7BG074400 Rh7CG074500 Rh7DG074500
rosa_wichuraiana	Rw7G006190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1018
AccII	CGCG	2 cut(s)	33, 257
AciI	CCGC	2 cut(s)	33, 755
AclI	AACGTT	1 cut(s)	1145
AclWI	GGATC	4 cut(s)	493, 545, 884, 1226
AcsI	RAATTY	6 cut(s)	94, 391, 462, 810, 850, 1098
AcuI	CTGAAG	2 cut(s)	56, 567
AdeI	CACNNNGTG	1 cut(s)	878
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	2 cut(s)	570, 589
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	8 cut(s)	140, 421, 443, 692, 935, 1034, 1207, 1334
AjiI	CACGTC	1 cut(s)	878
AjnI	CCWGG	1 cut(s)	901
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	8 cut(s)	129, 501, 519, 579, 661, 787, 1109, 1330
AluI	AGCT	8 cut(s)	129, 501, 519, 579, 661, 787, 1109, 1330
Alw21I	GWGCWC	1 cut(s)	503
AlwI	GGATC	4 cut(s)	493, 545, 884, 1226
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	407, 752, 986
ApeKI	GCWGC	3 cut(s)	579, 794, 1109
ApoI	RAATTY	6 cut(s)	94, 391, 462, 810, 850, 1098
ArsI	GACNNNNNNTTYG	4 cut(s)	377, 409, 1070, 1102
Asp700I	GAANNNNTTC	1 cut(s)	1222
AspLEI	GCGC	3 cut(s)	33, 119, 147
AspS9I	GGNCC	2 cut(s)	273, 407
AsuC2I	CCSGG	2 cut(s)	571, 894
AsuHPI	GGTGA	5 cut(s)	162, 332, 395, 482, 1076
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	1018
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	3 cut(s)	108, 598, 1137
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	3 cut(s)	566, 781, 1096
BccI	CCATC	5 cut(s)	418, 1055, 1254, 1343, 1355
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	1348
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	2 cut(s)	571, 894
BfaI	CTAG	1 cut(s)	1002
BfmI	CTRYAG	2 cut(s)	291, 529
BfoI	RGCGCY	1 cut(s)	148
BfrI	CTTAAG	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	1348
BisI	GCNGC	5 cut(s)	34, 580, 755, 795, 1110
BlsI	GCNGC	5 cut(s)	35, 581, 756, 796, 1111
Bme1390I	CCNGG	3 cut(s)	571, 894, 903
Bme18I	GGWCC	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	273, 407
BmiI	GGNNCC	1 cut(s)	1020
BmrFI	CCNGG	3 cut(s)	571, 894, 903
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	3 cut(s)	85, 878, 1205
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	3 cut(s)	108, 598, 1137
BpmI	CTGGAG	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	1145
BpuMI	CCSGG	2 cut(s)	571, 894
Bsa29I	ATCGAT	2 cut(s)	6, 707
BsaBI	GATNNNNATC	1 cut(s)	1283
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 589
Bse1I	ACTGG	2 cut(s)	106, 221
Bse8I	GATNNNNATC	1 cut(s)	1283
BseBI	CCWGG	1 cut(s)	903
BseCI	ATCGAT	2 cut(s)	6, 707
BseGI	GGATG	3 cut(s)	463, 1011, 1196
BseJI	GATNNNNATC	1 cut(s)	1283
BseLI	CCNNNNNNNGG	2 cut(s)	570, 589
BseNI	ACTGG	2 cut(s)	106, 221
BseRI	GAGGAG	1 cut(s)	553
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	3 cut(s)	566, 781, 1096
Bsh1236I	CGCG	2 cut(s)	33, 257
BshFI	GGCC	3 cut(s)	409, 754, 988
BshNI	GGYRCC	1 cut(s)	1018
BshVI	ATCGAT	2 cut(s)	6, 707
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	3 cut(s)	381, 571, 894
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	2 cut(s)	570, 589
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	409, 754, 988
Bsp1286I	GDGCHC	2 cut(s)	503, 655
Bsp68I	TCGCGA	1 cut(s)	257
BspACI	CCGC	2 cut(s)	33, 755
BspANI	GGCC	3 cut(s)	409, 754, 988
BspDI	ATCGAT	2 cut(s)	6, 707
BspFNI	CGCG	2 cut(s)	33, 257
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	1020
BspMAI	CTGCAG	1 cut(s)	533
BspPI	GGATC	4 cut(s)	493, 545, 884, 1226
BspQI	GCTCTTC	2 cut(s)	135, 508
BspT107I	GGYRCC	1 cut(s)	1018
BspTI	CTTAAG	1 cut(s)	680
BsrI	ACTGG	2 cut(s)	106, 221
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	2 cut(s)	481, 604
Bst6I	CTCTTC	4 cut(s)	135, 508, 1245, 1339
BstAFI	CTTAAG	1 cut(s)	680
BstDEI	CTNAG	3 cut(s)	47, 495, 637
BstF5I	GGATG	3 cut(s)	463, 1011, 1196
BstFNI	CGCG	2 cut(s)	33, 257
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	3 cut(s)	33, 119, 147
BstMWI	GCNNNNNNNGC	4 cut(s)	803, 903, 925, 973
BstNI	CCWGG	1 cut(s)	903
BstSCI	CCNGG	3 cut(s)	569, 892, 901
BstSFI	CTRYAG	2 cut(s)	291, 529
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	2 cut(s)	33, 257
BstV1I	GCAGC	3 cut(s)	566, 781, 1096
BstV2I	GAAGAC	3 cut(s)	108, 598, 1137
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	2 cut(s)	6, 707
BsuI	GTATCC	1 cut(s)	1348
BsuRI	GGCC	3 cut(s)	409, 754, 988
BsuTUI	ATCGAT	2 cut(s)	6, 707
BtrI	CACGTC	1 cut(s)	878
BtsCI	GGATG	3 cut(s)	463, 1011, 1196
BtsIMutI	CAGTG	3 cut(s)	228, 345, 543
BtuMI	TCGCGA	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	3 cut(s)	33, 119, 147
Cfr13I	GGNCC	2 cut(s)	273, 407
ClaI	ATCGAT	2 cut(s)	6, 707
CseI	GACGC	2 cut(s)	225, 379
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	9 cut(s)	28, 164, 665, 782, 822, 1070, 1150, 1201, 1316
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	3 cut(s)	47, 495, 637
DraIII	CACNNNGTG	1 cut(s)	878
Eam1104I	CTCTTC	4 cut(s)	135, 508, 1245, 1339
EarI	CTCTTC	4 cut(s)	135, 508, 1245, 1339
Ecl136II	GAGCTC	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	501
Eco57I	CTGAAG	2 cut(s)	56, 567
EcoICRI	GAGCTC	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	901
EcoT22I	ATGCAT	1 cut(s)	1317
EcoT38I	GRGCYC	1 cut(s)	503
FaeI	CATG	9 cut(s)	31, 167, 668, 785, 825, 1073, 1153, 1204, 1319
FalI	AAGNNNNNCTT	2 cut(s)	1314, 1346
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	9 cut(s)	27, 163, 664, 781, 821, 1069, 1149, 1200, 1315
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	5 cut(s)	34, 580, 755, 795, 1110
FokI	GGATG	3 cut(s)	470, 1018, 1183
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	5 cut(s)	34, 580, 755, 795, 1110
FspBI	CTAG	1 cut(s)	1002
GlaI	GCGC	3 cut(s)	32, 118, 146
GluI	GCNGC	5 cut(s)	34, 580, 755, 795, 1110
GsuI	CTGGAG	1 cut(s)	809
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	3 cut(s)	409, 754, 988
HapII	CCGG	3 cut(s)	381, 571, 894
HgaI	GACGC	2 cut(s)	225, 379
HhaI	GCGC	3 cut(s)	33, 119, 147
Hin1II	CATG	9 cut(s)	31, 167, 668, 785, 825, 1073, 1153, 1204, 1319
Hin6I	GCGC	3 cut(s)	31, 117, 145
HinP1I	GCGC	3 cut(s)	31, 117, 145
HindIII	AAGCTT	1 cut(s)	1328
HpaII	CCGG	3 cut(s)	381, 571, 894
HphI	GGTGA	5 cut(s)	162, 332, 395, 482, 1076
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	256, 782, 873
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	879, 1303
HpyAV	CCTTC	3 cut(s)	80, 1076, 1328
HpyCH4III	ACNGT	2 cut(s)	481, 604
HpyCH4IV	ACGT	5 cut(s)	766, 801, 877, 1145, 1301
HpyCH4V	TGCA	5 cut(s)	163, 531, 806, 1112, 1315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	803, 903, 925, 973
HpyF3I	CTNAG	3 cut(s)	47, 495, 637
HpySE526I	ACGT	5 cut(s)	766, 801, 877, 1145, 1301
Hsp92II	CATG	9 cut(s)	31, 167, 668, 785, 825, 1073, 1153, 1204, 1319
HspAI	GCGC	3 cut(s)	31, 117, 145
Ksp22I	TGATCA	1 cut(s)	880
LguI	GCTCTTC	2 cut(s)	135, 508
LmnI	GCTCC	1 cut(s)	666
Lsp1109I	GCAGC	3 cut(s)	566, 781, 1096
LweI	GCATC	3 cut(s)	85, 878, 1205
MaeI	CTAG	1 cut(s)	1002
MaeII	ACGT	5 cut(s)	766, 801, 877, 1145, 1301
MaeIII	GTNAC	7 cut(s)	168, 308, 320, 383, 470, 767, 1026
MfeI	CAATTG	1 cut(s)	416
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	503, 655
MlyI	GAGTC	3 cut(s)	176, 467, 602
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	205, 448, 571, 574, 784, 978, 1002, 1334
Mph1103I	ATGCAT	1 cut(s)	1317
MroXI	GAANNNNTTC	1 cut(s)	1222
MseI	TTAA	6 cut(s)	131, 525, 681, 818, 834, 1118
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	1109
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	3 cut(s)	381, 571, 894
MspR9I	CCNGG	3 cut(s)	571, 894, 903
MunI	CAATTG	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	2 cut(s)	33, 257
MwoI	GCNNNNNNNGC	4 cut(s)	803, 903, 925, 973
NciI	CCSGG	2 cut(s)	571, 894
NlaIII	CATG	9 cut(s)	31, 167, 668, 785, 825, 1073, 1153, 1204, 1319
NlaIV	GGNNCC	1 cut(s)	1020
NmuCI	GTSAC	6 cut(s)	168, 308, 320, 383, 470, 767
NruI	TCGCGA	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	1317
PagI	TCATGA	1 cut(s)	781
PciSI	GCTCTTC	2 cut(s)	135, 508
PdmI	GAANNNNTTC	1 cut(s)	1222
PfeI	GAWTC	7 cut(s)	41, 155, 185, 536, 674, 732, 1137
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	5 cut(s)	35, 581, 756, 796, 1111
PleI	GAGTC	3 cut(s)	175, 467, 601
PpsI	GAGTC	3 cut(s)	175, 467, 601
Psp124BI	GAGCTC	1 cut(s)	503
Psp1406I	AACGTT	1 cut(s)	1145
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	1020
PspPI	GGNCC	2 cut(s)	273, 407
PstI	CTGCAG	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	1109
RruI	TCGCGA	1 cut(s)	257
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	503
SapI	GCTCTTC	2 cut(s)	135, 508
SaqAI	TTAA	6 cut(s)	131, 525, 681, 818, 834, 1118
SatI	GCNGC	5 cut(s)	34, 580, 755, 795, 1110
Sau96I	GGNCC	2 cut(s)	273, 407
SchI	GAGTC	3 cut(s)	176, 467, 602
ScrFI	CCNGG	3 cut(s)	571, 894, 903
SduI	GDGCHC	2 cut(s)	503, 655
SfaNI	GCATC	3 cut(s)	85, 878, 1205
SfcI	CTRYAG	2 cut(s)	291, 529
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	680, 1160
SmoI	CTYRAG	2 cut(s)	680, 1160
SsiI	CCGC	2 cut(s)	33, 755
SspMI	CTAG	1 cut(s)	1002
SstI	GAGCTC	1 cut(s)	503
StyD4I	CCNGG	3 cut(s)	569, 892, 901
TaaI	ACNGT	2 cut(s)	481, 604
TaiI	ACGT	5 cut(s)	769, 804, 880, 1148, 1304
TaqI	TCGA	4 cut(s)	6, 265, 707, 1298
TauI	GCSGC	2 cut(s)	36, 757
TfiI	GAWTC	7 cut(s)	41, 155, 185, 536, 674, 732, 1137
Tru1I	TTAA	6 cut(s)	131, 525, 681, 818, 834, 1118
Tru9I	TTAA	6 cut(s)	131, 525, 681, 818, 834, 1118
TscAI	CASTG	3 cut(s)	228, 352, 550
TseFI	GTSAC	6 cut(s)	168, 308, 320, 383, 470, 767
TseI	GCWGC	3 cut(s)	579, 794, 1109
Tsp45I	GTSAC	6 cut(s)	168, 308, 320, 383, 470, 767
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	3 cut(s)	228, 352, 550
Vha464I	CTTAAG	1 cut(s)	680
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	6 cut(s)	94, 391, 462, 810, 850, 1098
XmnI	GAANNNNTTC	1 cut(s)	1222
XspI	CTAG	1 cut(s)	1002
Zsp2I	ATGCAT	1 cut(s)	1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.