pycom14g19180

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007000
Physical Location & Seq
Forward (+)
20588426 .. 20589928
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1083 bp
ATGCCCGAGATGCAGATAATTTCTCATACATTAAGATCTCATGGAGTCAAAGTGGCTAAAGTGCACAAGTATGACTGGTTAATTCTTGTACTTCTCGCGGCGGTTGATCTGTCTTTGAATTTTATAGAGCCTTTTCATCGTTTCGTTGGCGAAGAAATGATGATCGATCTCAAATACCCTTTTCAGAAAGACACCATTCCTTTCTGGGCTGTTCCAGCTTCCTGTATACTATATTTTTCTTTGGAAATGATTTCCGCATACCCCTTTTCTTTCTGTTGGTTGATTATTACTTTCCAACTTATAGGTCTTTTCTATTCTGTTCTCATAACTCTTGTAATAACGGATGCAATCAAGGATGCTGTCGGCCGCCCGCGTCCAAACTTCTTCTGGCGGTGCTTCCCTAATGGAATAGGTGTAGGTGACAATTTTCTTTTTCTTTCGCTAACGATGGTTGTAAGCGTAAGGGCTTGTCCCTGCATTATGCTGAACTGCTTGTCAATCACGTCACAGGTATATGATCCAAACACTAACAATGCTATCTGCACTGGAGAGAAAAAGATTATAAAGGAAGGACATAAAAGCTTTCCTAGCGGGCATACTTCAGTGCCTAATTCGTTTGCAATTGTCAATTGTGCAGTTTCATTTGCAGGTCTTGGTTTTCTTGCATGGTATTTATCGGGGAAGATCAAAGTGTTTGACCGTAGAGGCCATTCCGCAAAGCTTTGCATTGTATTTCTTCCGTTACTCTGTGCTGCTCTCGTGGGAATCTCTCGTGTGGATGACTACTGGCATCATTGGCAGGACGTCTTTGCTGGAGGTCTTATAGGTTTACTACTAAATGCAATGATACAATTTTCAGTTCCTTCCACTATAAAACATAATGTAGAAAGAATTGTCATAGCTTCGATTTGTTACTTGCAATCCTTCCCTCTCCCAAACCAGCGGGATGGGTGGGCACCTCATGCGTATTTCCTCATGCTGGATGCCGATAGGAATGTTGGCGAATCCTTATCTCCAGCCACGAGGGTTAACTCTCTTCGTATGCGAAGAACAGATATTGAGAGTCCAGGCTCAAGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

361

Amino Acids

40.39

Weight (kDa)

8.45

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 100 - 279 6.7e-21 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AatII GACGTC 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 638
AccB1I GGYRCC 1 cut(s) 955
AccI GTMKAC 1 cut(s) 226
AccII CGCG 2 cut(s) 98, 373
AciI CCGC 9 cut(s) 98, 101, 255, 367, 371, 391, 591, 714, 943
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 585
AcyI GRCGYC 1 cut(s) 804
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 979
AgsI TTSAA 1 cut(s) 118
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 1066
AluBI AGCT 4 cut(s) 218, 582, 721, 902
AluI AGCT 4 cut(s) 218, 582, 721, 902
Alw21I GWGCWC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 2 cut(s) 364, 706
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 2 cut(s) 66, 958
BanI GGYRCC 1 cut(s) 955
BauI CACGAG 3 cut(s) 758, 771, 1021
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 739
BccI CCATC 2 cut(s) 442, 941
BciT130I CCWGG 1 cut(s) 1068
BfaI CTAG 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 638
BglII AGATCT 1 cut(s) 35
BisI GCNGC 3 cut(s) 99, 367, 753
BlsI GCNGC 3 cut(s) 100, 368, 754
Bme1390I CCNGG 1 cut(s) 1068
BmeT110I CYCGRG 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 1 cut(s) 1068
BmsI GCATC 4 cut(s) 334, 346, 799, 973
BpmI CTGGAG 3 cut(s) 567, 834, 999
BpuEI CTTGAG 1 cut(s) 1057
Bsa29I ATCGAT 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 804
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 979
Bse1I ACTGG 3 cut(s) 80, 550, 791
Bse3DI GCAATG 1 cut(s) 849
BseBI CCWGG 1 cut(s) 1068
BseCI ATCGAT 1 cut(s) 165
BseGI GGATG 5 cut(s) 349, 361, 784, 952, 988
BseLI CCNNNNNNNGG 1 cut(s) 979
BseMI GCAATG 1 cut(s) 849
BseNI ACTGG 3 cut(s) 80, 550, 791
BseSI GKGCMC 2 cut(s) 66, 958
BseX3I CGGCCG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 739
BsgI GTGCAG 2 cut(s) 526, 654
Bsh1236I CGCG 2 cut(s) 98, 373
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 2 cut(s) 366, 708
BshNI GGYRCC 1 cut(s) 955
BshVI ATCGAT 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 979
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 2 cut(s) 366, 708
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 66, 958
Bsp143I GATC 6 cut(s) 35, 106, 162, 166, 517, 684
BspACI CCGC 9 cut(s) 98, 101, 255, 367, 371, 391, 591, 714, 943
BspANI GGCC 2 cut(s) 366, 708
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 2 cut(s) 98, 373
BspLI GGNNCC 1 cut(s) 957
BspMI ACCTGC 1 cut(s) 638
BspPI GGATC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 955
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 3 cut(s) 80, 550, 791
BssMI GATC 6 cut(s) 35, 106, 162, 166, 517, 684
BssNAI GTATAC 1 cut(s) 227
BssNI GRCGYC 1 cut(s) 804
BssSI CACGAG 3 cut(s) 758, 771, 1021
Bst1107I GTATAC 1 cut(s) 227
Bst2BI CACGAG 3 cut(s) 758, 771, 1021
Bst2UI CCWGG 1 cut(s) 1068
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 1041
BstACI GRCGYC 1 cut(s) 804
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 2 cut(s) 371, 593
BstF5I GGATG 5 cut(s) 349, 361, 784, 952, 988
BstFNI CGCG 2 cut(s) 98, 373
BstKTI GATC 6 cut(s) 38, 109, 165, 169, 520, 687
BstMBI GATC 6 cut(s) 35, 106, 162, 166, 517, 684
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 5 cut(s) 10, 215, 588, 796, 962
BstNI CCWGG 1 cut(s) 1068
BstSCI CCNGG 1 cut(s) 1066
BstSLI GKGCMC 2 cut(s) 66, 958
BstUI CGCG 2 cut(s) 98, 373
BstV1I GCAGC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 947
BstYI RGATCY 1 cut(s) 35
BstZ17I GTATAC 1 cut(s) 227
BstZI CGGCCG 1 cut(s) 364
Bsu15I ATCGAT 1 cut(s) 165
BsuRI GGCC 2 cut(s) 366, 708
BsuTUI ATCGAT 1 cut(s) 165
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 5 cut(s) 349, 361, 784, 952, 988
BtsIMutI CAGTG 2 cut(s) 543, 609
BveI ACCTGC 1 cut(s) 638
Cac8I GCNNGC 2 cut(s) 371, 593
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 89
CviAII CATG 4 cut(s) 41, 666, 962, 976
CviQI GTAC 1 cut(s) 89
DpnI GATC 6 cut(s) 37, 108, 164, 168, 519, 686
DpnII GATC 6 cut(s) 35, 106, 162, 166, 517, 684
EaeI YGGCCR 1 cut(s) 364
EagI CGGCCG 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 1041
EarI CTCTTC 1 cut(s) 1041
EclXI CGGCCG 1 cut(s) 364
Eco52I CGGCCG 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 1066
FaeI CATG 4 cut(s) 44, 669, 965, 979
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 40, 665, 961, 975
FauI CCCGC 3 cut(s) 378, 584, 936
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 99, 367, 753
FokI GGATG 5 cut(s) 356, 368, 791, 959, 995
Fsp4HI GCNGC 3 cut(s) 99, 367, 753
FspBI CTAG 1 cut(s) 588
GluI GCNGC 3 cut(s) 99, 367, 753
GsuI CTGGAG 3 cut(s) 567, 834, 999
HaeIII GGCC 2 cut(s) 366, 708
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 804
Hin1II CATG 4 cut(s) 44, 669, 965, 979
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HindIII AAGCTT 2 cut(s) 580, 719
HinfI GANTC 4 cut(s) 45, 765, 1004, 1063
HpaI GTTAAC 1 cut(s) 1030
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 4 cut(s) 64, 227, 830, 1030
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 4 cut(s) 64, 227, 830, 1030
HpyAV CCTTC 3 cut(s) 563, 873, 934
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 503, 804
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 215, 588, 796, 962
HpySE526I ACGT 2 cut(s) 503, 804
Hsp92I GRCGYC 1 cut(s) 804
Hsp92II CATG 4 cut(s) 44, 669, 965, 979
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 6 cut(s) 35, 106, 162, 166, 517, 684
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 4 cut(s) 334, 346, 799, 973
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 503, 804
MaeIII GTNAC 4 cut(s) 419, 504, 741, 911
MalI GATC 6 cut(s) 37, 108, 164, 168, 519, 686
MboI GATC 6 cut(s) 35, 106, 162, 166, 517, 684
MboII GAAGA 6 cut(s) 164, 376, 694, 728, 1028, 1059
MfeI CAATTG 2 cut(s) 621, 628
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 66, 958
MluCI AATT 9 cut(s) 18, 81, 118, 424, 610, 621, 628, 851, 891
MlyI GAGTC 2 cut(s) 54, 1072
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 698, 809, 939, 969, 983, 1017
MseI TTAA 3 cut(s) 32, 80, 1029
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 943
MspR9I CCNGG 1 cut(s) 1068
MunI CAATTG 2 cut(s) 621, 628
MvaI CCWGG 1 cut(s) 1068
MvnI CGCG 2 cut(s) 98, 373
MwoI GCNNNNNNNGC 5 cut(s) 10, 215, 588, 796, 962
NdeII GATC 6 cut(s) 35, 106, 162, 166, 517, 684
NlaIII CATG 4 cut(s) 44, 669, 965, 979
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 2 cut(s) 419, 504
PfeI GAWTC 2 cut(s) 765, 1004
PkrI GCNGC 3 cut(s) 100, 368, 754
PleI GAGTC 2 cut(s) 53, 1071
PpsI GAGTC 2 cut(s) 53, 1071
PsiI TTATAA 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 1066
PspGI CCWGG 1 cut(s) 1066
PspN4I GGNNCC 1 cut(s) 957
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 32, 80, 1029
SatI GCNGC 3 cut(s) 99, 367, 753
Sau3AI GATC 6 cut(s) 35, 106, 162, 166, 517, 684
SchI GAGTC 2 cut(s) 54, 1072
ScrFI CCNGG 1 cut(s) 1068
SduI GDGCHC 2 cut(s) 66, 958
SfaNI GCATC 4 cut(s) 334, 346, 799, 973
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
Sse9I AATT 9 cut(s) 18, 81, 118, 424, 610, 621, 628, 851, 891
SsiI CCGC 9 cut(s) 98, 101, 255, 367, 371, 391, 591, 714, 943
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 1066
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 506, 807
TaqI TCGA 2 cut(s) 165, 905
TasI AATT 9 cut(s) 18, 81, 118, 424, 610, 621, 628, 851, 891
TatI WGTACW 1 cut(s) 88
TauI GCSGC 2 cut(s) 101, 369
TfiI GAWTC 2 cut(s) 765, 1004
Tru1I TTAA 3 cut(s) 32, 80, 1029
Tru9I TTAA 3 cut(s) 32, 80, 1029
TscAI CASTG 2 cut(s) 550, 609
TseFI GTSAC 2 cut(s) 419, 504
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 419, 504
TspDTI ATGAA 2 cut(s) 125, 630
TspGWI ACGGA 2 cut(s) 356, 729
TspRI CASTG 2 cut(s) 550, 609
VneI GTGCAC 1 cut(s) 62
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 1 cut(s) 588
ZraI GACGTC 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.