pycom15g00350

Prolyl endopeptidase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
207349 .. 212265
4917 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1716 bp
ATGCGGGTTGAGGATAAGGCGGTCAAGCCTGAAACTATATCATGGGTCAAGTTTTCGGGTATTTGCTGGACACATGATCATAAAGGGTTTTTCTACAGCCGCTATCCAGCTCCAAAAGAAGGAGAAGGAGAAGATATTGATGCTGGGACAGAGACCAACTCAAATCTTTATCACGAGTTATACTATCATTTTGTGGGTACTGATCAATCAGAAGACATATTATGCTGGAGGGATTCTGAAAATCCTAAATACTCGTTTGGAGCTGATGTTACAGATGATGGGAAATATATTCTTCTGTATGTTGAGGAGGGTTGCGACCCAGTCAACAAATTTTATTACTGTGACATGTCTGCACTTCCTAATGGTCTTGAAGGTCTAAGGGGGAAAAACGATTTACTGCCAGTTATCAAGGTTATTGATAAATTTGATGCACAGTATCATGTCATTGCAAATGATGAAACTGTGTTTACTCTTCTGACAAACAAGGATGCTCCAAAATATAAGTTGGTCCGAGTTGATCTGAAGGAACCAACTGTTTGGACTGACGTTGTCCCAGAATCTGAAAAAGATGTGCTTGAATCAGCATCTGCTGTAAATGGTACCCAAATGATTGTTAGTTACTTGAGTGATGTGAAGTATGTTGTACAGATAAGGGATTTGAAATCAGGTAACTTGCTGCATCAATTACCGATTGACATTGGATCGGTTAATGGGATTTCGGCAAGACGTGAAGACAGTACAGTTTTTTTTGGGTTTACAAGTTTTCTTACCCCTGGTATAATTTATCAGTGTAATCTAGACAATGAAATTCCAGACTTGAAGGTATTTCGCGAAATTACGGTTCCTGGGTTTGAACGCTCAGAGTTCCATGTTGATCAGGTATTCGTTCCCAGTAAGGATGGCACTAAGATACCAACATTTGTTGTGGCCAGAAAGAACATTAGTTTGGATGGATCACATCCATGCTTACTATACGGATATGGTGGATTTAACATTAGTATTACGCCTTCATTCAGTGTTAGTCGTAGTGTACTTACAAGGCATTTAGGTGTTGTTTACTGCATAGCCAATATCCGTGGGGGTGGAGAGTATGGTGAGGAATGGCATAAAGCAGGCTCCCTCTCTAAAAAGCAAAATTGCTTTGATGACTTCATTTCTGCAGCTGAATACCTTGTATCTGCCGGTTATACCCAACCCAGCAAGTTGTGTATTGAAGGTGGAAGTAATGGTGGACTGCTCGTTGGAGCTTGCATAAATCAGAGACCTGATCTTTTTGGTTGTGCGCTGGCTCATGTTGGTGTTATGGATATGCTACGGTTCCACAAGTTTACCATAGGTCATGCCTGGACTTCTGATTATGGCTGCTCTGACAAGGAGGAAGAGTTCCGTTGGTTAATTAAGTACTCGCCTTTACACAATGTTAGGAGACCATGGGAACAACATGCAAGCCAACCTCACCAATACCCATCTACCATGTTATTGACTGCGGATCATGATGACCGAGTTGTACCACTACACTCGTTGAAGTTATTGGCGACCTTGCAATATGTTCTGATCACAAGTTTGGAGAATAGCCCACAGACAAATCCGATTATTGGTCGCATTGAATGCAAGGCGGGGCATGGAGCTGGACGTCCAACCCAGAAAATGATTGACGAAGCTGCTGACCGGTATAGTTTCATGGCTAAAATGTTGGGTGCATCATGGATAGAGTAG

Protein Analysis

572

Amino Acids

64.03

Weight (kDa)

5.48

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9_N PF02897 1 - 270 2.9e-73 Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9 PF00326 336 - 566 2.1e-60 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1636
Acc65I GGTACC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 599
AccII CGCG 1 cut(s) 831
AciI CCGC 5 cut(s) 4, 20, 100, 1487, 1616
AclWI GGATC 3 cut(s) 709, 961, 1497
AcoI YGGCCR 1 cut(s) 927
AcsI RAATTY 3 cut(s) 329, 422, 807
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 1633
AfaI GTAC 7 cut(s) 199, 601, 645, 739, 1032, 1403, 1509
AfiI CCNNNNNNNGG 2 cut(s) 119, 1595
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 1668
AgsI TTSAA 8 cut(s) 371, 578, 661, 820, 854, 1214, 1525, 1607
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 3 cut(s) 772, 844, 1343
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AloI GAACNNNNNNTCC 2 cut(s) 1367, 1399
AluBI AGCT 6 cut(s) 110, 263, 1163, 1247, 1628, 1661
AluI AGCT 6 cut(s) 110, 263, 1163, 1247, 1628, 1661
Alw26I GTCTC 3 cut(s) 146, 1255, 1420
AlwI GGATC 3 cut(s) 709, 961, 1497
AlwNI CAGNNNCTG 2 cut(s) 560, 587
AoxI GGCC 1 cut(s) 927
ApeKI GCWGC 4 cut(s) 676, 1160, 1362, 1661
ApoI RAATTY 3 cut(s) 329, 422, 807
AsiGI ACCGGT 1 cut(s) 1668
Asp718I GGTACC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 1285
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 1106, 1448
AvaII GGWCC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 929
BanI GGYRCC 1 cut(s) 599
BarI GAAGNNNNNNTAC 2 cut(s) 991, 1023
BauI CACGAG 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 219, 738
BbvI GCAGC 4 cut(s) 663, 1172, 1349, 1648
BccI CCATC 4 cut(s) 272, 893, 944, 1474
BciT130I CCWGG 3 cut(s) 774, 846, 1345
BclI TGATCA 4 cut(s) 76, 202, 874, 1554
BcoDI GTCTC 3 cut(s) 146, 1255, 1420
BfaI CTAG 1 cut(s) 797
BfmI CTRYAG 2 cut(s) 94, 1158
BisI GCNGC 5 cut(s) 100, 677, 1161, 1363, 1662
BlsI GCNGC 5 cut(s) 101, 678, 1162, 1364, 1663
BmcAI AGTACT 1 cut(s) 1403
Bme1390I CCNGG 3 cut(s) 774, 846, 1345
Bme18I GGWCC 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 5 cut(s) 528, 601, 843, 1117, 1319
BmrFI CCNGG 3 cut(s) 774, 846, 1345
BmrI ACTGGG 2 cut(s) 314, 885
BmsI GCATC 6 cut(s) 130, 418, 478, 593, 688, 1709
BmuI ACTGGG 2 cut(s) 314, 885
BpiI GAAGAC 2 cut(s) 219, 738
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 643
BsaHI GRCGYC 1 cut(s) 1633
BsaI GGTCTC 3 cut(s) 146, 1255, 1420
BsaJI CCNNGG 4 cut(s) 772, 845, 1075, 1430
BsaWI WCCGGW 1 cut(s) 1668
BsaXI ACNNNNNCTCC 4 cut(s) 252, 282, 1367, 1397
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 1595
Bse118I RCCGGY 2 cut(s) 1181, 1668
Bse1I ACTGG 3 cut(s) 320, 401, 891
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 3 cut(s) 774, 846, 1345
BseDI CCNNGG 4 cut(s) 772, 845, 1075, 1430
BseGI GGATG 4 cut(s) 493, 904, 955, 958
BseLI CCNNNNNNNGG 2 cut(s) 119, 1595
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 3 cut(s) 320, 401, 891
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 4 cut(s) 663, 1172, 1349, 1648
BseYI CCCAGC 2 cut(s) 143, 1196
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 831
BshFI GGCC 1 cut(s) 929
BshNI GGYRCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 1668
BsiSI CCGG 2 cut(s) 1182, 1669
BslFI GGGAC 2 cut(s) 160, 536
BslI CCNNNNNNNGG 2 cut(s) 119, 1595
BsmAI GTCTC 3 cut(s) 146, 1255, 1420
BsmFI GGGAC 2 cut(s) 160, 536
BsmI GAATGC 1 cut(s) 1613
BsnI GGCC 1 cut(s) 929
Bso31I GGTCTC 3 cut(s) 146, 1255, 1420
Bsp1407I TGTACA 1 cut(s) 643
Bsp143I GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
Bsp19I CCATGG 1 cut(s) 1430
Bsp68I TCGCGA 1 cut(s) 831
BspACI CCGC 5 cut(s) 4, 20, 100, 1487, 1616
BspANI GGCC 1 cut(s) 929
BspCNI CTCAG 1 cut(s) 872
BspFNI CGCG 1 cut(s) 831
BspHI TCATGA 1 cut(s) 1492
BspLI GGNNCC 5 cut(s) 528, 601, 843, 1117, 1319
BspMAI CTGCAG 1 cut(s) 1162
BspPI GGATC 3 cut(s) 709, 961, 1497
BspT107I GGYRCC 1 cut(s) 599
BspTNI GGTCTC 3 cut(s) 146, 1255, 1420
BsrDI GCAATG 1 cut(s) 444
BsrFI RCCGGY 2 cut(s) 1181, 1668
BsrGI TGTACA 1 cut(s) 643
BsrI ACTGG 3 cut(s) 320, 401, 891
BssAI RCCGGY 2 cut(s) 1181, 1668
BssECI CCNNGG 4 cut(s) 772, 845, 1075, 1430
BssMI GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
BssNI GRCGYC 1 cut(s) 1633
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 1430
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 3 cut(s) 774, 846, 1345
Bst4CI ACNGT 8 cut(s) 341, 435, 463, 535, 737, 742, 841, 1317
Bst6I CTCTTC 2 cut(s) 477, 1374
BstACI GRCGYC 1 cut(s) 1633
BstAPI GCANNNNNTGC 1 cut(s) 1608
BstAUI TGTACA 1 cut(s) 643
BstC8I GCNNGC 4 cut(s) 1114, 1249, 1287, 1447
BstDEI CTNAG 3 cut(s) 377, 859, 906
BstDSI CCRYGG 2 cut(s) 1075, 1430
BstF5I GGATG 4 cut(s) 493, 904, 955, 958
BstFNI CGCG 1 cut(s) 831
BstHHI GCGC 1 cut(s) 1285
BstKTI GATC 9 cut(s) 79, 205, 520, 704, 877, 956, 1270, 1492, 1557
BstMAI GTCTC 3 cut(s) 146, 1255, 1420
BstMBI GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
BstMWI GCNNNNNNNGC 1 cut(s) 1608
BstNI CCWGG 3 cut(s) 774, 846, 1345
BstNSI RCATGY 2 cut(s) 349, 1445
BstSCI CCNGG 3 cut(s) 772, 844, 1343
BstSFI CTRYAG 2 cut(s) 94, 1158
BstUI CGCG 1 cut(s) 831
BstV1I GCAGC 4 cut(s) 663, 1172, 1349, 1648
BstV2I GAAGAC 2 cut(s) 219, 738
BstXI CCANNNNNNTGG 1 cut(s) 537
BsuRI GGCC 1 cut(s) 929
BtgI CCRYGG 2 cut(s) 1075, 1430
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 4 cut(s) 493, 904, 955, 958
BtsIMutI CAGTG 2 cut(s) 794, 1021
BtuMI TCGCGA 1 cut(s) 831
Cac8I GCNNGC 4 cut(s) 1114, 1249, 1287, 1447
CaiI CAGNNNCTG 2 cut(s) 560, 587
CciI TCATGA 1 cut(s) 1492
CfoI GCGC 1 cut(s) 1285
Cfr10I RCCGGY 2 cut(s) 1181, 1668
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 7 cut(s) 198, 600, 644, 738, 1031, 1402, 1508
CspAI ACCGGT 1 cut(s) 1668
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviQI GTAC 7 cut(s) 198, 600, 644, 738, 1031, 1402, 1508
DdeI CTNAG 3 cut(s) 377, 859, 906
DpnI GATC 9 cut(s) 78, 204, 519, 703, 876, 955, 1269, 1491, 1556
DpnII GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
EaeI YGGCCR 1 cut(s) 927
Eam1104I CTCTTC 2 cut(s) 477, 1374
EarI CTCTTC 2 cut(s) 477, 1374
Eco130I CCWWGG 1 cut(s) 1430
Eco31I GGTCTC 3 cut(s) 146, 1255, 1420
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 542
EcoRII CCWGG 3 cut(s) 772, 844, 1343
EcoT14I CCWWGG 1 cut(s) 1430
ErhI CCWWGG 1 cut(s) 1430
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 2 cut(s) 160, 536
FauI CCCGC 1 cut(s) 1609
FbaI TGATCA 4 cut(s) 76, 202, 874, 1554
Fnu4HI GCNGC 5 cut(s) 100, 677, 1161, 1363, 1662
FokI GGATG 4 cut(s) 500, 911, 945, 962
Fsp4HI GCNGC 5 cut(s) 100, 677, 1161, 1363, 1662
FspBI CTAG 1 cut(s) 797
GlaI GCGC 1 cut(s) 1284
GluI GCNGC 5 cut(s) 100, 677, 1161, 1363, 1662
GsaI CCCAGC 2 cut(s) 147, 1200
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 929
HapII CCGG 2 cut(s) 1182, 1669
HhaI GCGC 1 cut(s) 1285
Hin1I GRCGYC 1 cut(s) 1633
Hin6I GCGC 1 cut(s) 1283
HinP1I GCGC 1 cut(s) 1283
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 3 cut(s) 233, 557, 578
HpaII CCGG 2 cut(s) 1182, 1669
HphI GGTGA 2 cut(s) 1106, 1448
Hpy166II GTNNAC 7 cut(s) 325, 468, 756, 1031, 1057, 1232, 1329
Hpy188III TCNNGA 6 cut(s) 173, 368, 797, 812, 830, 1493
Hpy8I GTNNAC 7 cut(s) 325, 468, 756, 1031, 1057, 1232, 1329
HpyAV CCTTC 7 cut(s) 113, 119, 365, 517, 814, 1017, 1208
HpyCH4III ACNGT 8 cut(s) 341, 435, 463, 535, 737, 742, 841, 1317
HpyCH4IV ACGT 3 cut(s) 546, 727, 1633
HpyF10VI GCNNNNNNNGC 1 cut(s) 1608
HpyF3I CTNAG 3 cut(s) 377, 859, 906
HpySE526I ACGT 3 cut(s) 546, 727, 1633
Hsp92I GRCGYC 1 cut(s) 1633
HspAI GCGC 1 cut(s) 1283
KpnI GGTACC 1 cut(s) 603
Ksp22I TGATCA 4 cut(s) 76, 202, 874, 1554
Kzo9I GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
LmnI GCTCC 6 cut(s) 115, 260, 496, 1121, 1244, 1625
Lsp1109I GCAGC 4 cut(s) 663, 1172, 1349, 1648
LweI GCATC 6 cut(s) 130, 418, 478, 593, 688, 1709
MaeI CTAG 1 cut(s) 797
MaeII ACGT 3 cut(s) 546, 727, 1633
MaeIII GTNAC 4 cut(s) 268, 341, 617, 668
MalI GATC 9 cut(s) 78, 204, 519, 703, 876, 955, 1269, 1491, 1556
MboI GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
MboII GAAGA 6 cut(s) 143, 224, 284, 464, 743, 1391
MlsI TGGCCA 1 cut(s) 929
MluCI AATT 8 cut(s) 329, 422, 683, 780, 807, 834, 1135, 1395
MluNI TGGCCA 1 cut(s) 929
MmeI TCCRAC 2 cut(s) 1222, 1661
MnlI CCTC 8 cut(s) 4, 222, 298, 301, 1090, 1130, 1369, 1464
Mox20I TGGCCA 1 cut(s) 929
MscI TGGCCA 1 cut(s) 929
MseI TTAA 4 cut(s) 708, 990, 1394, 1398
MslI CAYNNNNRTG 3 cut(s) 961, 1047, 1296
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 2 cut(s) 1182, 1669
MspR9I CCNGG 3 cut(s) 774, 846, 1345
Mva1269I GAATGC 1 cut(s) 1613
MvaI CCWGG 3 cut(s) 774, 846, 1345
MvnI CGCG 1 cut(s) 831
MwoI GCNNNNNNNGC 1 cut(s) 1608
NcoI CCATGG 1 cut(s) 1430
NdeII GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
NlaIV GGNNCC 5 cut(s) 528, 601, 843, 1117, 1319
NmuCI GTSAC 1 cut(s) 341
NruI TCGCGA 1 cut(s) 831
NspI RCATGY 2 cut(s) 349, 1445
PacI TTAATTAA 1 cut(s) 1398
PagI TCATGA 1 cut(s) 1492
PciI ACATGT 1 cut(s) 345
PctI GAATGC 1 cut(s) 1613
PfeI GAWTC 3 cut(s) 233, 557, 578
PflFI GACNNNGTC 2 cut(s) 320, 548
PinAI ACCGGT 1 cut(s) 1668
PkrI GCNGC 5 cut(s) 101, 678, 1162, 1364, 1663
PscI ACATGT 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 772, 844, 1343
PspFI CCCAGC 2 cut(s) 143, 1196
PspGI CCWGG 3 cut(s) 772, 844, 1343
PspN4I GGNNCC 5 cut(s) 528, 601, 843, 1117, 1319
PspPI GGNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 1162
PstNI CAGNNNCTG 2 cut(s) 560, 587
PsyI GACNNNGTC 2 cut(s) 320, 548
PvuII CAGCTG 1 cut(s) 1163
RruI TCGCGA 1 cut(s) 831
RsaI GTAC 7 cut(s) 199, 601, 645, 739, 1032, 1403, 1509
RsaNI GTAC 7 cut(s) 198, 600, 644, 738, 1031, 1402, 1508
RseI CAYNNNNRTG 3 cut(s) 961, 1047, 1296
SaqAI TTAA 4 cut(s) 708, 990, 1394, 1398
SatI GCNGC 5 cut(s) 100, 677, 1161, 1363, 1662
Sau3AI GATC 9 cut(s) 76, 202, 517, 701, 874, 953, 1267, 1489, 1554
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 1 cut(s) 1403
ScrFI CCNGG 3 cut(s) 774, 846, 1345
SfaNI GCATC 6 cut(s) 130, 418, 478, 593, 688, 1709
SfcI CTRYAG 2 cut(s) 94, 1158
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 3 cut(s) 961, 1047, 1296
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 8 cut(s) 329, 422, 683, 780, 807, 834, 1135, 1395
SsiI CCGC 5 cut(s) 4, 20, 100, 1487, 1616
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 3 cut(s) 772, 844, 1343
StyI CCWWGG 1 cut(s) 1430
TaaI ACNGT 8 cut(s) 341, 435, 463, 535, 737, 742, 841, 1317
TaiI ACGT 3 cut(s) 549, 730, 1636
TaqII GACCGA 1 cut(s) 1515
TasI AATT 8 cut(s) 329, 422, 683, 780, 807, 834, 1135, 1395
TatI WGTACW 4 cut(s) 643, 737, 1030, 1401
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 3 cut(s) 233, 557, 578
Tru1I TTAA 4 cut(s) 708, 990, 1394, 1398
Tru9I TTAA 4 cut(s) 708, 990, 1394, 1398
TscAI CASTG 2 cut(s) 794, 1021
TseFI GTSAC 1 cut(s) 341
TseI GCWGC 4 cut(s) 676, 1160, 1362, 1661
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 5 cut(s) 471, 819, 999, 1141, 1669
TspGWI ACGGA 3 cut(s) 990, 1064, 1376
TspRI CASTG 2 cut(s) 794, 1021
Tth111I GACNNNGTC 2 cut(s) 320, 548
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 3 cut(s) 329, 422, 807
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 2 cut(s) 349, 1445
XspI CTAG 1 cut(s) 797
ZraI GACGTC 1 cut(s) 1634
ZrmI AGTACT 1 cut(s) 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.