Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Forward (+)

939361 .. 940729

Gene Structure 1369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGCGTCGAGAAGAGAGAGAGAGATTCGACGGACGAGGAGCGCGGGAACAGTAGCAGCAGCACCCGGAACTTGGACACAGGGAGGGCAGAGGCTCCGGTGTGGCTGATGAAGTGCCCGGTGGTCGTCGCCAAGTCGTGGAGCTCCCACAACCCCTCCGATCCCCACCCGATCGCCAAAGTCGTCCTCTCCTTCGATCCCCTACGCGCCGACGACCCCACTGCCATGGAGTTCAAGATGGAGATGCCTGACTCTGCTGCTGCCAATTTGCCGAAAAGTTATTCATTGAATATGTTTAAAGACTTTGTTCCCATGTGCGTTTTCTCCGAAACAAATCAAGGCAAAGTTTCTGTGGAAGGTAAAGTGGATCGCAAGTTTGATATGAAGCCCCACGGTACTAACATCGAGGAGTATGGGAAGCTGTGTCGTGAAAGGACAAACAAGTCCATGATCAAGAATAGACAAATACAGATCGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

7.71

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIF_beta_N	PF17683	33 - 129	6.8e-09	TFIIF, beta subunit N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	442
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccII	CGCG	2 cut(s)	45, 207
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	3 cut(s)	155, 191, 375
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	2 cut(s)	73, 138
AgsI	TTSAA	2 cut(s)	235, 289
AluBI	AGCT	2 cut(s)	144, 421
AluI	AGCT	2 cut(s)	144, 421
Alw21I	GWGCWC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	155, 191, 375
ApeKI	GCWGC	4 cut(s)	57, 60, 257, 260
AspLEI	GCGC	2 cut(s)	45, 209
AsuC2I	CCSGG	2 cut(s)	67, 119
BaeGI	GKGCMC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	4 cut(s)	69, 72, 244, 247
BccI	CCATC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	67, 119
BisI	GCNGC	4 cut(s)	58, 61, 258, 261
BlsI	GCNGC	4 cut(s)	59, 62, 259, 262
Bme1390I	CCNGG	2 cut(s)	67, 119
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	67, 119
BmsI	GCATC	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	67, 119
Bsa29I	ATCGAT	2 cut(s)	474, 478
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	225, 391
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 138
BseCI	ATCGAT	2 cut(s)	474, 478
BseDI	CCNNGG	2 cut(s)	225, 391
BseLI	CCNNNNNNNGG	2 cut(s)	73, 138
BseRI	GAGGAG	2 cut(s)	53, 422
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	69, 72, 244, 247
Bsh1236I	CGCG	2 cut(s)	45, 207
Bsh1285I	CGRYCG	2 cut(s)	174, 478
BshVI	ATCGAT	2 cut(s)	474, 478
BsiEI	CGRYCG	2 cut(s)	174, 478
BsiHKAI	GWGCWC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	67, 98, 119
BslI	CCNNNNNNNGG	2 cut(s)	73, 138
Bsp1286I	GDGCHC	2 cut(s)	119, 146
Bsp143I	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	1 cut(s)	45
BspDI	ATCGAT	2 cut(s)	474, 478
BspFNI	CGCG	2 cut(s)	45, 207
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	3 cut(s)	155, 191, 375
BssECI	CCNNGG	2 cut(s)	225, 391
BssMI	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	53, 395
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	225, 391
BstFNI	CGCG	2 cut(s)	45, 207
BstHHI	GCGC	2 cut(s)	45, 209
BstKTI	GATC	7 cut(s)	163, 174, 199, 370, 453, 474, 478
BstMBI	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
BstMCI	CGRYCG	2 cut(s)	174, 478
BstSCI	CCNGG	2 cut(s)	65, 117
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	2 cut(s)	45, 207
BstV1I	GCAGC	4 cut(s)	69, 72, 244, 247
BstXI	CCANNNNNNTGG	1 cut(s)	226
Bsu15I	ATCGAT	2 cut(s)	474, 478
BsuTUI	ATCGAT	2 cut(s)	474, 478
BtgI	CCRYGG	2 cut(s)	225, 391
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CfoI	GCGC	2 cut(s)	45, 209
ClaI	ATCGAT	2 cut(s)	474, 478
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	3 cut(s)	226, 313, 448
CviJI	RGCY	5 cut(s)	95, 106, 144, 388, 421
CviKI_1	RGCY	5 cut(s)	95, 106, 144, 388, 421
CviQI	GTAC	1 cut(s)	396
DpnI	GATC	7 cut(s)	162, 173, 198, 369, 452, 473, 477
DpnII	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
DraI	TTTAAA	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	442
DseDI	GACNNNNNNGTC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	3 cut(s)	229, 316, 451
FaiI	YATR	6 cut(s)	227, 293, 314, 383, 414, 449
FatI	CATG	3 cut(s)	225, 312, 447
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	4 cut(s)	58, 61, 258, 261
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	58, 61, 258, 261
GlaI	GCGC	2 cut(s)	44, 208
GluI	GCNGC	4 cut(s)	58, 61, 258, 261
HapII	CCGG	3 cut(s)	67, 98, 119
HhaI	GCGC	2 cut(s)	45, 209
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	229, 316, 451
Hin6I	GCGC	2 cut(s)	43, 207
HinP1I	GCGC	2 cut(s)	43, 207
HinfI	GANTC	2 cut(s)	26, 251
HpaII	CCGG	3 cut(s)	67, 98, 119
Hpy188I	TCNGA	2 cut(s)	160, 328
Hpy188III	TCNNGA	4 cut(s)	10, 235, 428, 454
Hpy99I	CGWCG	4 cut(s)	11, 34, 131, 215
HpyAV	CCTTC	2 cut(s)	202, 350
HpyCH4III	ACNGT	2 cut(s)	53, 395
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	229, 316, 451
HspAI	GCGC	2 cut(s)	43, 207
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
LmnI	GCTCC	4 cut(s)	40, 100, 141, 149
LpnPI	CCDG	5 cut(s)	66, 80, 111, 132, 261
Lsp1109I	GCAGC	4 cut(s)	69, 72, 244, 247
LweI	GCATC	1 cut(s)	234
MalI	GATC	7 cut(s)	162, 173, 198, 369, 452, 473, 477
MboI	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
MboII	GAAGA	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	119, 146
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	31, 78, 85, 166, 197, 400
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	3 cut(s)	67, 98, 119
MspR9I	CCNGG	2 cut(s)	67, 119
MvnI	CGCG	2 cut(s)	45, 207
NciI	CCSGG	2 cut(s)	67, 119
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
NlaIII	CATG	3 cut(s)	229, 316, 451
NlaIV	GGNNCC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	59, 62, 259, 262
Ple19I	CGATCG	2 cut(s)	174, 478
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	96
PvuI	CGATCG	2 cut(s)	174, 478
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	58, 61, 258, 261
Sau3AI	GATC	7 cut(s)	160, 171, 196, 367, 450, 471, 475
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	67, 119
SduI	GDGCHC	2 cut(s)	119, 146
SetI	ASST	3 cut(s)	146, 361, 423
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	65, 117
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	53, 395
TaqI	TCGA	6 cut(s)	9, 29, 195, 405, 474, 478
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	4 cut(s)	57, 60, 257, 260
TspDTI	ATGAA	3 cut(s)	125, 273, 398
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.