Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0018284

Physical Location & Seq

Genomic Coordinates Forward (+)

940911 .. 941281

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAAAAGAACTAGAAGAGATCGTGGGGAGCTGGAGGATATAGTGTTCAAGTTATTTGAACAAAAACAACCAAACTGGACCTTGAAGCAGCTGGTGCAAGAAACCAATCAACCTGCGCAATTCTTGAAAGAGATACTGAATGAGCTGTGTGTGTACAACAAAAGGGGAACCAACCAGGGTACTTATGAGCTTAAGCCGGAATACAAGAAATCTGTCGAGGATACTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 map03022

Pfam Domains

Protein Families

TFIIF_beta

Protein Analysis

78

Amino Acids

9.29

Weight (kDa)

6.33

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIF_beta	PF02270	5 - 69	1.7e-21	TFIIF, beta subunit HTH domain
WHD_UBR1	PF22960	13 - 72	5.8e-06	E3 ubiquitin-protein ligase UBR1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75510
fragaria_vesca	FvH4_2g38930
malus_domestica	MD08G1022300.v1.1 MD15G1019500.v1.1 MD15G1019600.v1.1
prunus_persica	Prupe.1G371700_v2.0.a1
pyrus_communis	pycom08g01720 pycom15g01620 pycom15g01630
rosa_multiflora	Rmu_sc0006892.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	155, 181
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	49, 59, 85, 127
AjnI	CCWGG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	31, 91, 145, 190
AluI	AGCT	4 cut(s)	31, 91, 145, 190
ApeKI	GCWGC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	121
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	197
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	191
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	10
BstAFI	CTTAAG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	154, 180
CviJI	RGCY	5 cut(s)	31, 91, 145, 190, 196
CviKI_1	RGCY	5 cut(s)	31, 91, 145, 190, 196
CviQI	GTAC	2 cut(s)	154, 180
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	174
FaiI	YATR	2 cut(s)	41, 186
Fnu4HI	GCNGC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	12
FspI	TGCGCA	1 cut(s)	117
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	53
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	17, 61, 77, 126, 161, 188, 210
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	27
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	2 cut(s)	28, 211
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	91
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	169
NsbI	TGCGCA	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	155, 181
RsaNI	GTAC	2 cut(s)	154, 180
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	6 cut(s)	33, 83, 93, 115, 147, 192
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	119
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	174
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.