pycom15g02050

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011737
Physical Location & Seq
Forward (+)
1214817 .. 1217881
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1539 bp
ATGGATTCCTGCTGTGCGACATTGAGGACCAATGGGTTCTTGGGGGAGGGTGTGAGGTTGGGTTCAAAGAGCAGAGATTTGAGTGCCCAGTTTCTGAAAAGCTCTAAATTTGAAACCAGAGGTAGGAAGCTTAAGCCGCCTGGTGTGGCTTACTCCATTCTTACAGATGTCGACAATGAGAATGTGACGTTTCAGGCACCACTGTTTGAGACTCCAAAAGCTGACCCCAAAAATGTGGCTTCTATAATTTTGGGTGGAGGTGCCGGAACTCGCCTTTTTCCTCTCACCAGCAAGAGAGCCAAGCCGGCGGTTCCGATTGGAGGGTGTTACAGGCTGATTGATATCCCAATGAGCAATTGCATTAACAGTGGCATTAAAAAGATATTCATATTAACGCAATATAACTCGTTTTCCCTCAATCGTCACCTTGCTCGTACTTACAATTTTGGGGATGGTATGAATTTCGGAGATGGATTTGTGGAGGTTTTGGCTGCCACGCAAACGCCGGGAGAATCTGGAAAGAGATGGTTCCAAGGAACTGCTGATGCTGTCAGGCAATTTATATGGGTCTTTGAGGATGCAAAGAACAAAAATGTGGAGCATATACTGATACTATCAGGCGATCATCTATATAGGATGGACTATCTGGACTTTATACAGAAACATATTGATACAAATGCCGACATTACAGTTTCATGTATACCCATGGATGAAAGCCGGGCATCAGATTACGGACTCATGAAAATAGACCAGTCAGGGCGTATAATCCAATTTGCTGAAAAACCAAAAGGCCCTGACCTAGAAGCAATGCAAGTTGACACCACTGTTCTGGGGCTTTCTGATCTGGAGGCTATGAAATCTCCTTATATTGCATCGATGGGTGTTTATGTGTTCAGAACTGATGTCCTACTTAAGCTGTTAAGGTGGAGCTATCCTTCTTGCAATGATTTTGGCTCCGAGATTATTCCATCAGCTGTGAAGGAGCACAACGTCCAGGCATATCTATTCAATGACTACTGGGAAGATATTGGAACTGTAAAGTCTTTCTTCGATGCAAACTTGGCCCTCACAGAACAGCCTCCGAAGTTTGAATTCAACGATCCAAAGACACCTTTCTACACCTCTCCTAGATTCTTGCCACCTACAAAAGTTGAAAAATGCAGGATTATGGATGCAATTATTTCTCATGGTTGCTTCTTGCGAGAATGTAGCGTTCAACACTCCATTGTGGGTGTGCGCTCACGTCTAGAGTCCGGAGTCGAACTTAAGGATACTATGATGATGGGTGCAGACTACTACCAAACGGAATCCGAGACTGCATCTCTGCTAGCTCAAGGAAAGGTTCCAGTTGGTGTGGGAGAGAATACCAAAATCTGGAATTGCATAATCGACAAGAACGCCAAGATAGGAAGAAATGTGGTGATCACAAATGGCGATGGAGTTGAAGAAGCAGAGAGGGCAGACGAAGGATTTTACATAAGGTCGGGAATCACTGTCGTATTGAAGAACGCAACGATTAAAGATGGAACTGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

513

Amino Acids

56.81

Weight (kDa)

6.07

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 81 - 358 3.1e-76 Nucleotidyl transferase
LbH_GLGC PF25247 377 - 511 3.4e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011737)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27680
fragaria_vesca FvH4_2g39500 FvH4_2g39500
malus_domestica MD08G1027900.v1.1 MD15G1023900.v1.1
prunus_persica Prupe.1G376200_v2.0.a1
pyrus_communis pycom08g02220 pycom15g02050
rosa_chinensis RchiOBHm_Chr6g0301451
rosa_laevigata RLG00000011252
rosa_multiflora Rmu_sc0014417.1_g000012
rosa_roxburghii Rroxscaffold_7G00166810
rosa_rugosa Rorug06G0304800 Rorug06G0304900
rosa_samantha Rh6AG418500 Rh6BG424700 Rh6CG432000 Rh6DG417900
rosa_wichuraiana Rw6G036210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 196, 260
AccB7I CCANNNNNTGG 1 cut(s) 1374
AccI GTMKAC 2 cut(s) 171, 700
AccIII TCCGGA 1 cut(s) 1253
AciI CCGC 2 cut(s) 137, 308
AclWI GGATC 1 cut(s) 1094
AcsI RAATTY 3 cut(s) 107, 460, 1091
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 3 cut(s) 123, 320, 1374
AflII CTTAAG 3 cut(s) 131, 911, 1265
AgsI TTSAA 9 cut(s) 66, 113, 1009, 1091, 1096, 1154, 1217, 1445, 1504
AjiI CACGTC 1 cut(s) 1244
AjnI CCWGG 2 cut(s) 139, 993
AluBI AGCT 7 cut(s) 102, 130, 221, 916, 930, 974, 1331
AluI AGCT 7 cut(s) 102, 130, 221, 916, 930, 974, 1331
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 2 cut(s) 203, 1307
AlwI GGATC 1 cut(s) 1094
AlwNI CAGNNNCTG 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 1253
AoxI GGCC 2 cut(s) 790, 1062
ApeKI GCWGC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 107, 460, 1091
AspLEI GCGC 1 cut(s) 1239
AspS9I GGNCC 3 cut(s) 27, 791, 1063
AsuC2I CCSGG 2 cut(s) 507, 719
AsuHPI GGTGA 3 cut(s) 277, 416, 1432
AsuNHI GCTAGC 1 cut(s) 1327
AvaII GGWCC 1 cut(s) 27
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 196, 260
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 1 cut(s) 478
BccI CCATC 9 cut(s) 446, 464, 519, 631, 871, 976, 1276, 1430, 1517
BciT130I CCWGG 2 cut(s) 141, 995
BciVI GTATCC 1 cut(s) 1264
BclI TGATCA 1 cut(s) 1422
BcnI CCSGG 2 cut(s) 507, 719
BcoDI GTCTC 2 cut(s) 203, 1307
BfaI CTAG 4 cut(s) 800, 1128, 1247, 1328
BfrI CTTAAG 3 cut(s) 131, 911, 1265
BfuI GTATCC 1 cut(s) 1264
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 2 cut(s) 137, 492
BlsI GCNGC 2 cut(s) 138, 493
Bme1390I CCNGG 4 cut(s) 141, 507, 719, 995
Bme18I GGWCC 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 1244
BmgT120I GGNCC 3 cut(s) 27, 791, 1063
BmiI GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
BmrFI CCNGG 4 cut(s) 141, 507, 719, 995
BmrI ACTGGG 2 cut(s) 82, 1027
BmsI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
BmtI GCTAGC 1 cut(s) 1331
BmuI ACTGGG 2 cut(s) 82, 1027
BpmI CTGGAG 1 cut(s) 866
BpuEI CTTGAG 1 cut(s) 1317
BpuMI CCSGG 2 cut(s) 507, 719
Bsa29I ATCGAT 1 cut(s) 875
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 532, 705
BsaWI WCCGGW 1 cut(s) 1253
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 320, 1374
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 4 cut(s) 88, 751, 1022, 1346
Bse3DI GCAATG 2 cut(s) 813, 949
Bse8I GATNNNNATC 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 1253
BseBI CCWGG 2 cut(s) 141, 995
BseCI ATCGAT 1 cut(s) 875
BseDI CCNNGG 2 cut(s) 532, 705
BseGI GGATG 5 cut(s) 457, 583, 642, 715, 1177
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 3 cut(s) 123, 320, 1374
BseMI GCAATG 2 cut(s) 813, 949
BseNI ACTGG 4 cut(s) 88, 751, 1022, 1346
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 478
BsgI GTGCAG 1 cut(s) 1308
BshFI GGCC 2 cut(s) 792, 1064
BshNI GGYRCC 2 cut(s) 196, 260
BshVI ATCGAT 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 987
BsiSI CCGG 5 cut(s) 264, 305, 506, 718, 1254
BslI CCNNNNNNNGG 3 cut(s) 123, 320, 1374
BsmAI GTCTC 2 cut(s) 203, 1307
BsnI GGCC 2 cut(s) 792, 1064
Bsp1286I GDGCHC 2 cut(s) 88, 987
Bsp13I TCCGGA 1 cut(s) 1253
Bsp143I GATC 4 cut(s) 622, 841, 1099, 1422
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 2 cut(s) 137, 308
BspANI GGCC 2 cut(s) 792, 1064
BspDI ATCGAT 1 cut(s) 875
BspEI TCCGGA 1 cut(s) 1253
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 1 cut(s) 1094
BspT107I GGYRCC 2 cut(s) 196, 260
BspTI CTTAAG 3 cut(s) 131, 911, 1265
BsrDI GCAATG 2 cut(s) 813, 949
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 4 cut(s) 88, 751, 1022, 1346
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 532, 705
BssMI GATC 4 cut(s) 622, 841, 1099, 1422
BssNAI GTATAC 1 cut(s) 701
BssT1I CCWWGG 2 cut(s) 532, 705
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 2 cut(s) 141, 995
Bst4CI ACNGT 7 cut(s) 204, 368, 691, 826, 1036, 1495, 1531
BstAFI CTTAAG 3 cut(s) 131, 911, 1265
BstC8I GCNNGC 2 cut(s) 306, 1329
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 5 cut(s) 457, 583, 642, 715, 1177
BstHHI GCGC 1 cut(s) 1239
BstKTI GATC 4 cut(s) 625, 844, 1102, 1425
BstMAI GTCTC 2 cut(s) 203, 1307
BstMBI GATC 4 cut(s) 622, 841, 1099, 1422
BstMWI GCNNNNNNNGC 4 cut(s) 136, 305, 1061, 1457
BstNI CCWGG 2 cut(s) 141, 995
BstSCI CCNGG 4 cut(s) 139, 505, 717, 993
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 235, 829
BstZ17I GTATAC 1 cut(s) 701
Bsu15I ATCGAT 1 cut(s) 875
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 2 cut(s) 792, 1064
BsuTUI ATCGAT 1 cut(s) 875
BtgI CCRYGG 1 cut(s) 705
BtgZI GCGATG 1 cut(s) 1449
BtrI CACGTC 1 cut(s) 1244
BtsCI GGATG 5 cut(s) 457, 583, 642, 715, 1177
BtsIMutI CAGTG 4 cut(s) 200, 373, 822, 1491
Cac8I GCNNGC 2 cut(s) 306, 1329
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 738
CfoI GCGC 1 cut(s) 1239
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 27, 791, 1063
ClaI ATCGAT 1 cut(s) 875
Csp6I GTAC 1 cut(s) 435
CviAII CATG 4 cut(s) 696, 706, 739, 1187
CviQI GTAC 1 cut(s) 435
DpnI GATC 4 cut(s) 624, 843, 1101, 1424
DpnII GATC 4 cut(s) 622, 841, 1099, 1422
Eco130I CCWWGG 2 cut(s) 532, 705
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 1091
EcoRII CCWGG 2 cut(s) 139, 993
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 532, 705
ErhI CCWWGG 2 cut(s) 532, 705
FaeI CATG 4 cut(s) 699, 709, 742, 1190
FalI AAGNNNNNCTT 2 cut(s) 1031, 1063
FatI CATG 4 cut(s) 695, 705, 738, 1186
FbaI TGATCA 1 cut(s) 1422
FblI GTMKAC 2 cut(s) 171, 700
Fnu4HI GCNGC 2 cut(s) 137, 492
FokI GGATG 5 cut(s) 464, 590, 649, 722, 1184
Fsp4HI GCNGC 2 cut(s) 137, 492
FspBI CTAG 4 cut(s) 800, 1128, 1247, 1328
GlaI GCGC 1 cut(s) 1238
GluI GCNGC 2 cut(s) 137, 492
GsuI CTGGAG 1 cut(s) 866
HaeIII GGCC 2 cut(s) 792, 1064
HapII CCGG 5 cut(s) 264, 305, 506, 718, 1254
HhaI GCGC 1 cut(s) 1239
Hin1II CATG 4 cut(s) 699, 709, 742, 1190
Hin6I GCGC 1 cut(s) 1237
HinP1I GCGC 1 cut(s) 1237
HincII GTYRAC 2 cut(s) 172, 817
HindII GTYRAC 2 cut(s) 172, 817
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 9 cut(s) 5, 211, 512, 735, 1131, 1250, 1257, 1307, 1488
HpaII CCGG 5 cut(s) 264, 305, 506, 718, 1254
HphI GGTGA 3 cut(s) 277, 416, 1432
Hpy166II GTNNAC 3 cut(s) 172, 701, 817
Hpy188I TCNGA 9 cut(s) 96, 315, 467, 727, 841, 896, 958, 1083, 1312
Hpy188III TCNNGA 8 cut(s) 516, 647, 739, 845, 1247, 1254, 1375, 1485
Hpy8I GTNNAC 3 cut(s) 172, 701, 817
HpyAV CCTTC 3 cut(s) 945, 973, 1460
HpyCH4III ACNGT 7 cut(s) 204, 368, 691, 826, 1036, 1495, 1531
HpyCH4IV ACGT 3 cut(s) 188, 990, 1243
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 305, 1061, 1457
HpySE526I ACGT 3 cut(s) 188, 990, 1243
Hsp92II CATG 4 cut(s) 699, 709, 742, 1190
HspAI GCGC 1 cut(s) 1237
Kpn2I TCCGGA 1 cut(s) 1253
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Ksp22I TGATCA 1 cut(s) 1422
Kzo9I GATC 4 cut(s) 622, 841, 1099, 1422
LmnI GCTCC 4 cut(s) 598, 927, 959, 982
Lsp1109I GCAGC 1 cut(s) 478
LweI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
MaeI CTAG 4 cut(s) 800, 1128, 1247, 1328
MaeII ACGT 3 cut(s) 188, 990, 1243
MaeIII GTNAC 3 cut(s) 184, 326, 422
MalI GATC 4 cut(s) 624, 843, 1101, 1424
MboI GATC 4 cut(s) 622, 841, 1099, 1422
MboII GAAGA 5 cut(s) 1034, 1039, 1422, 1457, 1516
MfeI CAATTG 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 88, 987
MlyI GAGTC 4 cut(s) 205, 729, 1259, 1266
MroI TCCGGA 1 cut(s) 1253
MroNI GCCGGC 1 cut(s) 304
MseI TTAA 8 cut(s) 132, 363, 375, 392, 912, 920, 1266, 1518
MspA1I CMGCKG 1 cut(s) 974
MspCI CTTAAG 3 cut(s) 131, 911, 1265
MspI CCGG 5 cut(s) 264, 305, 506, 718, 1254
MspR9I CCNGG 4 cut(s) 141, 507, 719, 995
MunI CAATTG 1 cut(s) 355
MvaI CCWGG 2 cut(s) 141, 995
MwoI GCNNNNNNNGC 4 cut(s) 136, 305, 1061, 1457
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 2 cut(s) 507, 719
NcoI CCATGG 1 cut(s) 705
NdeII GATC 4 cut(s) 622, 841, 1099, 1422
NgoMIV GCCGGC 1 cut(s) 304
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 4 cut(s) 699, 709, 742, 1190
NlaIV GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
NmuCI GTSAC 2 cut(s) 184, 422
PagI TCATGA 1 cut(s) 738
PdiI GCCGGC 1 cut(s) 306
PfeI GAWTC 5 cut(s) 5, 512, 1131, 1307, 1488
PflMI CCANNNNNTGG 1 cut(s) 1374
PkrI GCNGC 2 cut(s) 138, 493
PleI GAGTC 4 cut(s) 205, 729, 1258, 1265
PpsI GAGTC 4 cut(s) 205, 729, 1258, 1265
Psp6I CCWGG 2 cut(s) 139, 993
PspGI CCWGG 2 cut(s) 139, 993
PspN4I GGNNCC 6 cut(s) 198, 262, 312, 530, 955, 1344
PspPI GGNCC 3 cut(s) 27, 791, 1063
PstNI CAGNNNCTG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 974
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 8 cut(s) 132, 363, 375, 392, 912, 920, 1266, 1518
SatI GCNGC 2 cut(s) 137, 492
Sau3AI GATC 4 cut(s) 622, 841, 1099, 1422
Sau96I GGNCC 3 cut(s) 27, 791, 1063
SchI GAGTC 4 cut(s) 205, 729, 1259, 1266
ScrFI CCNGG 4 cut(s) 141, 507, 719, 995
SduI GDGCHC 2 cut(s) 88, 987
SfaNI GCATC 7 cut(s) 535, 568, 731, 881, 1042, 1162, 1328
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 4 cut(s) 131, 911, 1265, 1332
SmoI CTYRAG 4 cut(s) 131, 911, 1265, 1332
SsiI CCGC 2 cut(s) 137, 308
SspMI CTAG 4 cut(s) 800, 1128, 1247, 1328
StyD4I CCNGG 4 cut(s) 139, 505, 717, 993
StyI CCWWGG 2 cut(s) 532, 705
TaaI ACNGT 7 cut(s) 204, 368, 691, 826, 1036, 1495, 1531
TaiI ACGT 3 cut(s) 191, 993, 1246
TaqI TCGA 5 cut(s) 171, 875, 1050, 1260, 1389
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 5 cut(s) 5, 512, 1131, 1307, 1488
Tru1I TTAA 8 cut(s) 132, 363, 375, 392, 912, 920, 1266, 1518
Tru9I TTAA 8 cut(s) 132, 363, 375, 392, 912, 920, 1266, 1518
TscAI CASTG 4 cut(s) 207, 373, 829, 1498
TseFI GTSAC 2 cut(s) 184, 422
TseI GCWGC 1 cut(s) 491
Tsp45I GTSAC 2 cut(s) 184, 422
TspDTI ATGAA 6 cut(s) 376, 473, 684, 726, 755, 869
TspGWI ACGGA 2 cut(s) 747, 1319
TspRI CASTG 4 cut(s) 207, 373, 829, 1498
Van91I CCANNNNNTGG 1 cut(s) 1374
Vha464I CTTAAG 3 cut(s) 131, 911, 1265
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 3 cut(s) 107, 460, 1091
XbaI TCTAGA 1 cut(s) 1246
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XmiI GTMKAC 2 cut(s) 171, 700
XspI CTAG 4 cut(s) 800, 1128, 1247, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.