Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Forward (+)

1246062 .. 1248619

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTACGAGCAAGGAGAAAAGGATAGCGCAAAAAAAACCCTCTCCCGGTTCGTCTCAGAGAGAGAGAGAGAGAGAGAGTCACAGTCTCACTTGCTTGAACAAAAAGAAAACCCCAACAAAAATCCTCACAGCTTCACCGAGAGAGAGAGGCACTGTGATTTCTTCTTAGAGAGAGAAACAAAAAACGACGCTGTAAAGATGTTCAGGAACCAATACGACACCGACGTGACGACATGGAGCCCCGCCGGGCGGCTCTTCCAGGTGGAGTACGCGATGGAGGCCGTCAAGCAAGGCTCCGCCGCCATTGGGCTCCGATCCAAAACCCACGTTGTCCTCGCCTGCGTTAACAAGGCCAACTCCGAGCTCTCTTCCCACCAGAAGAAGATCTTCAAGGTGGACGACCACATCGGCGTCGCCATTGCTGGCCTCACAGCCGACGGCCGTGTCCTCTCCCGGTACATGCGATCGGAGGCCATTAACTACAATTACACCTATGAGTCCCCGCTCCCCGTCGGGCGACTCGTCGTTCAGCTCGCCGATAAGGCTCAGGTGCGTCGCGTAGCAGTACCCCTATTTTTGAATCTGTGTGCTGTCTGTACCCAGCGCTCATGGAAGCGACCGTATGGAGTTGGACTATTAGTAGGTGGGTTGGATGAGTCTGGAGCTCATTTGTATTACAACTGCCCAAGTGGAAACTACTTCGAATACCAGGCTTTTGCAATAGGGTCTCGCTCACAAGCTGCAAAGACATACTTGGAGCGCAGGTTTGAGAATTTCACAGGCTCTACAAGGGAGGATCGATCAAGGATGCCCTCATTGCAACAAGGGAAACCTTGCAGGGAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

284

Amino Acids

32.32

Weight (kDa)

9.2

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	72 - 94	8.5e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	95 - 258	4.8e-45	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	753
AccBSI	CCGCTC	1 cut(s)	505
AccII	CGCG	2 cut(s)	272, 558
AciI	CCGC	5 cut(s)	243, 250, 297, 300, 503
AclWI	GGATC	2 cut(s)	309, 804
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	1 cut(s)	772
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	5 cut(s)	5, 269, 458, 567, 598
AfeI	AGCGCT	1 cut(s)	605
AfiI	CCNNNNNNNGG	3 cut(s)	45, 249, 306
AgsI	TTSAA	3 cut(s)	98, 391, 580
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	258, 708
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	132, 364, 532, 665, 740
AluI	AGCT	5 cut(s)	132, 364, 532, 665, 740
Alw21I	GWGCWC	2 cut(s)	366, 667
Alw26I	GTCTC	3 cut(s)	58, 90, 732
AlwI	GGATC	2 cut(s)	309, 804
Aor51HI	AGCGCT	1 cut(s)	605
AoxI	GGCC	5 cut(s)	279, 351, 424, 439, 471
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	1 cut(s)	772
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	3 cut(s)	29, 606, 762
AsuC2I	CCSGG	3 cut(s)	46, 247, 454
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	702
BanII	GRGCYC	4 cut(s)	242, 312, 366, 667
Bbv12I	GWGCWC	2 cut(s)	366, 667
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	3 cut(s)	266, 426, 454
BciT130I	CCWGG	2 cut(s)	260, 710
BcnI	CCSGG	3 cut(s)	46, 247, 454
BcoDI	GTCTC	3 cut(s)	58, 90, 732
BfoI	RGCGCY	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	384
BisI	GCNGC	3 cut(s)	251, 300, 741
BlsI	GCNGC	3 cut(s)	252, 301, 742
Bme1390I	CCNGG	5 cut(s)	46, 247, 260, 454, 710
BmgBI	CACGTC	1 cut(s)	226
BmiI	GGNNCC	4 cut(s)	209, 239, 295, 311
BmrFI	CCNGG	5 cut(s)	46, 247, 260, 454, 710
BmsI	GCATC	1 cut(s)	798
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	702
BpuMI	CCSGG	3 cut(s)	46, 247, 454
Bsa29I	ATCGAT	1 cut(s)	799
BsaHI	GRCGYC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	732
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 249, 306
Bse3DI	GCAATG	2 cut(s)	417, 815
BseBI	CCWGG	2 cut(s)	260, 710
BseCI	ATCGAT	1 cut(s)	799
BseGI	GGATG	2 cut(s)	658, 813
BseLI	CCNNNNNNNGG	3 cut(s)	45, 249, 306
BseMI	GCAATG	2 cut(s)	417, 815
BseMII	CTCAG	2 cut(s)	69, 560
BseX3I	CGGCCG	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	727
BseYI	CCCAGC	1 cut(s)	600
Bsh1236I	CGCG	2 cut(s)	272, 558
Bsh1285I	CGRYCG	3 cut(s)	442, 467, 620
BshFI	GGCC	5 cut(s)	281, 353, 426, 441, 473
BshVI	ATCGAT	1 cut(s)	799
BsiEI	CGRYCG	3 cut(s)	442, 467, 620
BsiHKAI	GWGCWC	2 cut(s)	366, 667
BsiSI	CCGG	3 cut(s)	46, 246, 454
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	3 cut(s)	45, 249, 306
BsmAI	GTCTC	3 cut(s)	58, 90, 732
BsmBI	CGTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	5 cut(s)	281, 353, 426, 441, 473
Bso31I	GGTCTC	1 cut(s)	732
Bsp119I	TTCGAA	1 cut(s)	702
Bsp1286I	GDGCHC	4 cut(s)	242, 312, 366, 667
Bsp143I	GATC	5 cut(s)	314, 384, 464, 796, 800
BspACI	CCGC	5 cut(s)	243, 250, 297, 300, 503
BspANI	GGCC	5 cut(s)	281, 353, 426, 441, 473
BspCNI	CTCAG	2 cut(s)	68, 559
BspDI	ATCGAT	1 cut(s)	799
BspFNI	CGCG	2 cut(s)	272, 558
BspLI	GGNNCC	4 cut(s)	209, 239, 295, 311
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	309, 804
BspQI	GCTCTTC	1 cut(s)	260
BspT104I	TTCGAA	1 cut(s)	702
BspTNI	GGTCTC	1 cut(s)	732
BsrBI	CCGCTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	417, 815
BssMI	GATC	5 cut(s)	314, 384, 464, 796, 800
BssNI	GRCGYC	1 cut(s)	411
Bst2UI	CCWGG	2 cut(s)	260, 710
Bst4CI	ACNGT	3 cut(s)	84, 155, 621
Bst6I	CTCTTC	2 cut(s)	260, 373
BstACI	GRCGYC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	702
BstC8I	GCNNGC	3 cut(s)	340, 424, 534
BstDEI	CTNAG	3 cut(s)	55, 166, 546
BstF5I	GGATG	2 cut(s)	658, 813
BstFNI	CGCG	2 cut(s)	272, 558
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	3 cut(s)	29, 606, 762
BstKTI	GATC	5 cut(s)	317, 387, 467, 799, 803
BstMAI	GTCTC	3 cut(s)	58, 90, 732
BstMBI	GATC	5 cut(s)	314, 384, 464, 796, 800
BstMCI	CGRYCG	3 cut(s)	442, 467, 620
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 542, 817
BstNI	CCWGG	2 cut(s)	260, 710
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	5 cut(s)	44, 245, 258, 452, 708
BstUI	CGCG	2 cut(s)	272, 558
BstV1I	GCAGC	1 cut(s)	727
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BstZI	CGGCCG	1 cut(s)	439
Bsu15I	ATCGAT	1 cut(s)	799
BsuRI	GGCC	5 cut(s)	281, 353, 426, 441, 473
BsuTUI	ATCGAT	1 cut(s)	799
BtgZI	GCGATG	1 cut(s)	287
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	658, 813
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	3 cut(s)	340, 424, 534
CfoI	GCGC	3 cut(s)	29, 606, 762
ClaI	ATCGAT	1 cut(s)	799
CseI	GACGC	3 cut(s)	197, 400, 542
Csp6I	GTAC	5 cut(s)	4, 268, 457, 566, 597
CviAII	CATG	3 cut(s)	234, 460, 609
CviQI	GTAC	5 cut(s)	4, 268, 457, 566, 597
DdeI	CTNAG	3 cut(s)	55, 166, 546
DpnI	GATC	5 cut(s)	316, 386, 466, 798, 802
DpnII	GATC	5 cut(s)	314, 384, 464, 796, 800
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	439
EagI	CGGCCG	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	260, 373
EarI	CTCTTC	2 cut(s)	260, 373
EciI	GGCGGA	1 cut(s)	286
Ecl136II	GAGCTC	2 cut(s)	364, 665
EclXI	CGGCCG	1 cut(s)	439
Eco24I	GRGCYC	4 cut(s)	242, 312, 366, 667
Eco31I	GGTCTC	1 cut(s)	732
Eco47III	AGCGCT	1 cut(s)	605
Eco52I	CGGCCG	1 cut(s)	439
Eco53kI	GAGCTC	2 cut(s)	364, 665
EcoICRI	GAGCTC	2 cut(s)	364, 665
EcoRII	CCWGG	2 cut(s)	258, 708
EcoT38I	GRGCYC	4 cut(s)	242, 312, 366, 667
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	237, 463, 612
FaiI	YATR	6 cut(s)	235, 461, 495, 610, 624, 751
FalI	AAGNNNNNCTT	4 cut(s)	371, 403, 737, 769
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	233, 459, 608
FauI	CCCGC	2 cut(s)	250, 510
Fnu4HI	GCNGC	3 cut(s)	251, 300, 741
FokI	GGATG	2 cut(s)	665, 820
FriOI	GRGCYC	4 cut(s)	242, 312, 366, 667
Fsp4HI	GCNGC	3 cut(s)	251, 300, 741
GlaI	GCGC	3 cut(s)	28, 605, 761
GluI	GCNGC	3 cut(s)	251, 300, 741
GsaI	CCCAGC	1 cut(s)	604
GsuI	CTGGAG	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	5 cut(s)	281, 353, 426, 441, 473
HapII	CCGG	3 cut(s)	46, 246, 454
HgaI	GACGC	3 cut(s)	197, 400, 542
HhaI	GCGC	3 cut(s)	29, 606, 762
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	3 cut(s)	237, 463, 612
Hin6I	GCGC	3 cut(s)	27, 604, 760
HinP1I	GCGC	3 cut(s)	27, 604, 760
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	5 cut(s)	77, 497, 519, 580, 656
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	3 cut(s)	46, 246, 454
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	346, 397
Hpy188I	TCNGA	4 cut(s)	58, 314, 361, 469
Hpy188III	TCNNGA	2 cut(s)	205, 660
Hpy8I	GTNNAC	2 cut(s)	346, 397
Hpy99I	CGWCG	7 cut(s)	191, 227, 416, 440, 515, 527, 558
HpyCH4III	ACNGT	3 cut(s)	84, 155, 621
HpyCH4IV	ACGT	2 cut(s)	225, 327
HpyCH4V	TGCA	4 cut(s)	719, 743, 820, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 542, 817
HpyF3I	CTNAG	3 cut(s)	55, 166, 546
HpySE526I	ACGT	2 cut(s)	225, 327
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	237, 463, 612
HspAI	GCGC	3 cut(s)	27, 604, 760
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	314, 384, 464, 796, 800
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	6 cut(s)	237, 299, 315, 510, 662, 757
Lsp1109I	GCAGC	1 cut(s)	727
LweI	GCATC	1 cut(s)	798
MaeII	ACGT	2 cut(s)	225, 327
MaeIII	GTNAC	2 cut(s)	78, 226
MalI	GATC	5 cut(s)	316, 386, 466, 798, 802
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	5 cut(s)	314, 384, 464, 796, 800
MboII	GAAGA	6 cut(s)	154, 247, 360, 379, 391, 394
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	4 cut(s)	242, 312, 366, 667
MluCI	AATT	2 cut(s)	484, 772
MlyI	GAGTC	4 cut(s)	86, 506, 513, 665
MmeI	TCCRAC	2 cut(s)	610, 630
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	2 cut(s)	345, 477
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	3 cut(s)	46, 246, 454
MspR9I	CCNGG	5 cut(s)	46, 247, 260, 454, 710
MvaI	CCWGG	2 cut(s)	260, 710
MvnI	CGCG	2 cut(s)	272, 558
MwoI	GCNNNNNNNGC	3 cut(s)	278, 542, 817
NciI	CCSGG	3 cut(s)	46, 247, 454
NdeII	GATC	5 cut(s)	314, 384, 464, 796, 800
NlaIII	CATG	3 cut(s)	237, 463, 612
NlaIV	GGNNCC	4 cut(s)	209, 239, 295, 311
NmuCI	GTSAC	2 cut(s)	78, 226
NspI	RCATGY	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	702
OliI	CACNNNNGTG	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 519
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	3 cut(s)	252, 301, 742
Ple19I	CGATCG	1 cut(s)	467
PleI	GAGTC	4 cut(s)	85, 505, 513, 664
PpsI	GAGTC	4 cut(s)	85, 505, 513, 664
Psp124BI	GAGCTC	2 cut(s)	366, 667
Psp6I	CCWGG	2 cut(s)	258, 708
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	2 cut(s)	258, 708
PspN4I	GGNNCC	4 cut(s)	209, 239, 295, 311
PsuI	RGATCY	1 cut(s)	384
PvuI	CGATCG	1 cut(s)	467
RsaI	GTAC	5 cut(s)	5, 269, 458, 567, 598
RsaNI	GTAC	5 cut(s)	4, 268, 457, 566, 597
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	2 cut(s)	366, 667
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	2 cut(s)	345, 477
SatI	GCNGC	3 cut(s)	251, 300, 741
Sau3AI	GATC	5 cut(s)	314, 384, 464, 796, 800
SchI	GAGTC	4 cut(s)	86, 506, 513, 665
ScrFI	CCNGG	5 cut(s)	46, 247, 260, 454, 710
SduI	GDGCHC	4 cut(s)	242, 312, 366, 667
SfaNI	GCATC	1 cut(s)	798
SfuI	TTCGAA	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	484, 772
SsiI	CCGC	5 cut(s)	243, 250, 297, 300, 503
SstI	GAGCTC	2 cut(s)	366, 667
StyD4I	CCNGG	5 cut(s)	44, 245, 258, 452, 708
TaaI	ACNGT	3 cut(s)	84, 155, 621
TaiI	ACGT	2 cut(s)	228, 330
TaqI	TCGA	2 cut(s)	702, 799
TasI	AATT	2 cut(s)	484, 772
TauI	GCSGC	2 cut(s)	253, 302
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	345, 477
Tru9I	TTAA	2 cut(s)	345, 477
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	78, 226
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	2 cut(s)	78, 226
TspRI	CASTG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	772
XceI	RCATGY	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.