radialis-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g39750 |
| malus_domestica | MD08G1031200.v1.1 MD15G1027000.v1.1 |
| prunus_persica | Prupe.1G378800_v2.0.a1 |
| pyrus_communis | pycom08g02460 pycom15g02300 |
| rosa_chinensis | RchiOBHm_Chr6g0301111 |
| rosa_roxburghii | Rroxscaffold_172G00445520 Rroxscaffold_7G00167150 |
| rosa_rugosa | Rorug06G0301400 |
| rosa_samantha | Rh6AG414900 Rh6BG421800 Rh6CG429400 Rh6DG414700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 190 |
| AciI | CCGC | 1 cut(s) | 59 |
| AclWI | GGATC | 1 cut(s) | 22 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 243 |
| AgsI | TTSAA | 2 cut(s) | 254, 284 |
| AjnI | CCWGG | 1 cut(s) | 242 |
| AluBI | AGCT | 1 cut(s) | 40 |
| AluI | AGCT | 1 cut(s) | 40 |
| AlwI | GGATC | 1 cut(s) | 22 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| BanI | GGYRCC | 1 cut(s) | 190 |
| BceAI | ACGGC | 2 cut(s) | 39, 120 |
| BciT130I | CCWGG | 1 cut(s) | 244 |
| BciVI | GTATCC | 1 cut(s) | 67 |
| BfuI | GTATCC | 1 cut(s) | 67 |
| Bme1390I | CCNGG | 1 cut(s) | 244 |
| BmiI | GGNNCC | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 244 |
| BmsI | GCATC | 1 cut(s) | 141 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 243 |
| BseBI | CCWGG | 1 cut(s) | 244 |
| BseDI | CCNNGG | 1 cut(s) | 243 |
| BseGI | GGATG | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BshNI | GGYRCC | 1 cut(s) | 190 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BsmI | GAATGC | 1 cut(s) | 55 |
| Bsp143I | GATC | 1 cut(s) | 14 |
| BspACI | CCGC | 1 cut(s) | 59 |
| BspLI | GGNNCC | 1 cut(s) | 192 |
| BspPI | GGATC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 1 cut(s) | 190 |
| BssECI | CCNNGG | 1 cut(s) | 243 |
| BssMI | GATC | 1 cut(s) | 14 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 1 cut(s) | 244 |
| Bst6I | CTCTTC | 2 cut(s) | 131, 263 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstDEI | CTNAG | 2 cut(s) | 231, 275 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 241 |
| BstF5I | GGATG | 1 cut(s) | 270 |
| BstKTI | GATC | 1 cut(s) | 17 |
| BstMBI | GATC | 1 cut(s) | 14 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 37 |
| BstNI | CCWGG | 1 cut(s) | 244 |
| BstSCI | CCNGG | 1 cut(s) | 242 |
| BsuI | GTATCC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 1 cut(s) | 129 |
| CviJI | RGCY | 3 cut(s) | 40, 107, 182 |
| CviKI_1 | RGCY | 3 cut(s) | 40, 107, 182 |
| DdeI | CTNAG | 2 cut(s) | 231, 275 |
| DpnI | GATC | 1 cut(s) | 16 |
| DpnII | GATC | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 2 cut(s) | 131, 263 |
| EarI | CTCTTC | 2 cut(s) | 131, 263 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 241 |
| EcoRI | GAATTC | 1 cut(s) | 279 |
| EcoRII | CCWGG | 1 cut(s) | 242 |
| FaiI | YATR | 1 cut(s) | 207 |
| FokI | GGATG | 1 cut(s) | 277 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| HinfI | GANTC | 1 cut(s) | 271 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 2 cut(s) | 21, 64 |
| Hpy188I | TCNGA | 1 cut(s) | 150 |
| Hpy188III | TCNNGA | 1 cut(s) | 12 |
| Hpy8I | GTNNAC | 2 cut(s) | 21, 64 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 106 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 37 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 275 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Kzo9I | GATC | 1 cut(s) | 14 |
| LpnPI | CCDG | 8 cut(s) | 41, 70, 83, 93, 168, 201, 229, 256 |
| LweI | GCATC | 1 cut(s) | 141 |
| MalI | GATC | 1 cut(s) | 16 |
| MboI | GATC | 1 cut(s) | 14 |
| MboII | GAAGA | 5 cut(s) | 148, 173, 266, 269, 280 |
| MluCI | AATT | 2 cut(s) | 202, 279 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MnlI | CCTC | 5 cut(s) | 121, 132, 172, 181, 215 |
| MspR9I | CCNGG | 1 cut(s) | 244 |
| Mva1269I | GAATGC | 1 cut(s) | 55 |
| MvaI | CCWGG | 1 cut(s) | 244 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 37 |
| NdeII | GATC | 1 cut(s) | 14 |
| NlaIV | GGNNCC | 1 cut(s) | 192 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 55 |
| PleI | GAGTC | 1 cut(s) | 279 |
| PpsI | GAGTC | 1 cut(s) | 279 |
| Psp6I | CCWGG | 1 cut(s) | 242 |
| PspGI | CCWGG | 1 cut(s) | 242 |
| PspN4I | GGNNCC | 1 cut(s) | 192 |
| Sau3AI | GATC | 1 cut(s) | 14 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 1 cut(s) | 244 |
| SetI | ASST | 3 cut(s) | 42, 89, 192 |
| SfaNI | GCATC | 1 cut(s) | 141 |
| Sse9I | AATT | 2 cut(s) | 202, 279 |
| SsiI | CCGC | 1 cut(s) | 59 |
| StyD4I | CCNGG | 1 cut(s) | 242 |
| TasI | AATT | 2 cut(s) | 202, 279 |
| TscAI | CASTG | 1 cut(s) | 129 |
| TspDTI | ATGAA | 1 cut(s) | 281 |
| TspRI | CASTG | 1 cut(s) | 129 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 241 |
| XapI | RAATTY | 1 cut(s) | 279 |