pycom15g02730

Protein of unknown function (DUF502)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015365
Physical Location & Seq
Reverse (-)
1670324 .. 1672358
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
ATGGCGACGAGAGGGAGAGAAAGGGATCTCGAGCTCCTCATCCCAGTCGCTGCCGTTTCCGAAAACGGAGGAGATTCCAAATCCTCCTCCCCACCAAACTCCCCACCTCCCACCACCTCCCATTCCCATCATCAAACCGGCCGCGAGGCATTTTCAAAAGTTATTCGGAGCTGGGCTTCCAAGAAGTTTATGACAGGATGTGTCATTCTTCTTCCAATAGCTATTACGTTCTACATCACATGGGCTTTCATTAAATTTGTTGATGGTTTATTCTCCCCAATCTACAACCACCTAGGAATCAATATTTTCGGTCTTGGATTTGCCACCTCCCTCGCCTTCATCTTCTTAGTCGGCGTTTTCATGCAGTCGTGGTTGGGAACTTCTGTTCTTACTCTATGGGAGTGGTTTATTACGAAAATGCCACTTATAAGCTATATCTATGCTGCATCAAAGCAAATTAGCACAGCAATATCACCAGATCAGAGCATAAACGCCTTCAAGGAAGTGGCGATCATAAGGCATCCAAGAATCGGGGAGTATGCATTAGGGTTTATCACTTCAACAGTTGTTCTTGATCAAAGAAACGTAGCAGAAGAGCTATGCTGCGTTTATGTACCTACTAACCATCTTTATCTGGGAGACATTTTTCTGATCAGTCCCAAGGATATTCTGAGACCAAATCTGTCAGTTGGAGAGGGGATTGAAATTGTCATCTCAGGAGGTCTGTCAATACCGCAACTTTTAACTACGGTGGATGCACAAGTTCTTACACCCAGAAGAGTTCCCCACTTTGAAGAGCCAAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF502

Protein Analysis

270

Amino Acids

29.72

Weight (kDa)

7.05

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF502 PF04367 110 - 209 9.8e-25 Protein of unknown function (DUF502)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015365)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18460
fragaria_vesca FvH4_2g39890 FvH4_2g39890 FvH4_2g39890
malus_domestica MD08G1034800.v1.1 MD15G1031600.v1.1
prunus_persica Prupe.1G380400_v2.0.a1
pyrus_communis pycom15g02730
rosa_chinensis RchiOBHm_Chr6g0300911
rosa_laevigata RLG00000011291
rosa_multiflora Rmu_sc0006254.1_g000003
rosa_roxburghii Rroxscaffold_7G00167320
rosa_samantha Rh6AG413000 Rh6BG420200 Rh6CG427700 Rh6DG413000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 142, 734
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 5 cut(s) 156, 499, 561, 704, 794
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 5 cut(s) 34, 171, 221, 432, 598
AluI AGCT 5 cut(s) 34, 171, 221, 432, 598
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 633, 667
AlwI GGATC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 50
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 50, 443, 603
ApoI RAATTY 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 29
AvrII CCTAGG 1 cut(s) 292
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 37, 430, 590
BccI CCATC 3 cut(s) 135, 257, 633
BceAI ACGGC 1 cut(s) 38
BclI TGATCA 2 cut(s) 574, 651
BcoDI GTCTC 2 cut(s) 633, 667
BfaI CTAG 1 cut(s) 293
BisI GCNGC 4 cut(s) 51, 142, 444, 604
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 4 cut(s) 52, 143, 445, 605
BmeT110I CYCGRG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 3 cut(s) 455, 529, 745
BmuI ACTGGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 2 cut(s) 292, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 292, 660
BseGI GGATG 4 cut(s) 39, 203, 520, 760
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 662, 729
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 26, 76, 84
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 37, 430, 590
BseYI CCCAGC 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 633, 667
BsmFI GGGAC 1 cut(s) 642
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 667
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 5 cut(s) 25, 478, 510, 574, 651
BspACI CCGC 2 cut(s) 142, 734
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 663, 728
BspFNI CGCG 1 cut(s) 144
BspPI GGATC 1 cut(s) 33
BspQI GCTCTTC 2 cut(s) 588, 789
BspTNI GGTCTC 1 cut(s) 667
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 292, 660
BssMI GATC 5 cut(s) 25, 478, 510, 574, 651
BssT1I CCWWGG 2 cut(s) 292, 660
Bst4CI ACNGT 2 cut(s) 565, 751
Bst6I CTCTTC 3 cut(s) 588, 772, 789
BstDEI CTNAG 3 cut(s) 346, 671, 715
BstF5I GGATG 4 cut(s) 39, 203, 520, 760
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 5 cut(s) 28, 481, 513, 577, 654
BstMAI GTCTC 2 cut(s) 633, 667
BstMBI GATC 5 cut(s) 25, 478, 510, 574, 651
BstMCI CGRYCG 1 cut(s) 142
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 37, 430, 590
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 4 cut(s) 39, 203, 520, 760
CaiI CAGNNNCTG 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 1 cut(s) 614
CviAII CATG 2 cut(s) 240, 361
CviJI RGCY 9 cut(s) 34, 141, 171, 176, 221, 245, 432, 598, 799
CviKI_1 RGCY 9 cut(s) 34, 141, 171, 176, 221, 245, 432, 598, 799
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 3 cut(s) 346, 671, 715
DpnI GATC 5 cut(s) 27, 480, 512, 576, 653
DpnII GATC 5 cut(s) 25, 478, 510, 574, 651
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 588, 772, 789
EarI CTCTTC 3 cut(s) 588, 772, 789
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 292, 660
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 667
Eco52I CGGCCG 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 292, 660
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 292, 660
FaeI CATG 2 cut(s) 243, 364
FaqI GGGAC 1 cut(s) 642
FatI CATG 2 cut(s) 239, 360
FbaI TGATCA 2 cut(s) 574, 651
Fnu4HI GCNGC 4 cut(s) 51, 142, 444, 604
FokI GGATG 4 cut(s) 26, 210, 507, 767
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 4 cut(s) 51, 142, 444, 604
FspBI CTAG 1 cut(s) 293
GluI GCNGC 4 cut(s) 51, 142, 444, 604
GsaI CCCAGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 138
Hin1II CATG 2 cut(s) 243, 364
HinfI GANTC 3 cut(s) 74, 297, 528
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 465
Hpy188I TCNGA 5 cut(s) 61, 168, 483, 651, 672
Hpy188III TCNNGA 3 cut(s) 29, 572, 717
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 346, 505
HpyCH4III ACNGT 2 cut(s) 565, 751
HpyCH4IV ACGT 2 cut(s) 227, 585
HpyCH4V TGCA 4 cut(s) 364, 446, 542, 758
HpyF3I CTNAG 3 cut(s) 346, 671, 715
HpySE526I ACGT 2 cut(s) 227, 585
Hsp92II CATG 2 cut(s) 243, 364
Ksp22I TGATCA 2 cut(s) 574, 651
Kzo9I GATC 5 cut(s) 25, 478, 510, 574, 651
LguI GCTCTTC 2 cut(s) 588, 789
LmnI GCTCC 2 cut(s) 39, 168
LpnPI CCDG 8 cut(s) 57, 151, 157, 180, 489, 620, 702, 787
Lsp1109I GCAGC 3 cut(s) 37, 430, 590
LweI GCATC 3 cut(s) 455, 529, 745
MaeI CTAG 1 cut(s) 293
MaeII ACGT 2 cut(s) 227, 585
MalI GATC 5 cut(s) 27, 480, 512, 576, 653
MboI GATC 5 cut(s) 25, 478, 510, 574, 651
MboII GAAGA 6 cut(s) 200, 203, 334, 605, 789, 806
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 254, 456, 705
MmeI TCCRAC 1 cut(s) 670
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 2 cut(s) 252, 743
MspI CCGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 144
NdeII GATC 5 cut(s) 25, 478, 510, 574, 651
NlaIII CATG 2 cut(s) 243, 364
NsiI ATGCAT 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 29
PciSI GCTCTTC 2 cut(s) 588, 789
PfeI GAWTC 3 cut(s) 74, 297, 528
PkrI GCNGC 4 cut(s) 52, 143, 445, 605
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 2 cut(s) 588, 789
SaqAI TTAA 2 cut(s) 252, 743
SatI GCNGC 4 cut(s) 51, 142, 444, 604
Sau3AI GATC 5 cut(s) 25, 478, 510, 574, 651
SduI GDGCHC 1 cut(s) 36
SfaNI GCATC 3 cut(s) 455, 529, 745
Sfr274I CTCGAG 1 cut(s) 29
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 254, 456, 705
SsiI CCGC 2 cut(s) 142, 734
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 36
StyI CCWWGG 2 cut(s) 292, 660
TaaI ACNGT 2 cut(s) 565, 751
TaiI ACGT 2 cut(s) 230, 588
TaqI TCGA 1 cut(s) 30
TaqII GACCGA 1 cut(s) 299
TasI AATT 3 cut(s) 254, 456, 705
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 74, 297, 528
Tru1I TTAA 2 cut(s) 252, 743
Tru9I TTAA 2 cut(s) 252, 743
TseI GCWGC 3 cut(s) 50, 443, 603
TspDTI ATGAA 3 cut(s) 238, 328, 349
TspGWI ACGGA 1 cut(s) 81
XapI RAATTY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 29
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 1 cut(s) 293
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.