pycom15g03440

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014679
Physical Location & Seq
Forward (+)
2120534 .. 2121757
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGGGCACCCCAAAGTTGATGCCTTTTTTCATCCTTGTAATCTTACACACAATGCTTTCTTCGAGCTCGGGTTCGAATTCGGATCGTTTTTATCCATCTGCAAAAGGTATCAGAGCAGCCTATTTCCCATCATTTAACTCCTTCTCACCATCCTCTATAGACACCCAATACTTCACCCACATCTACTATGCTTTCCTCGTACCCGAACCCATCACTTACAAACTCAACGTCACGGAATTCGACCAAGCAAGAATACCCGAATTCATCCAAGCGCTGCGGACCAAAAAGCCGGCCGTCACAACCCTCCTGTCTATAGGAGGCGGCGGTAGCAATTCAACCACGTTTGCACTCATGGCTTCCACCCAGGCAACCCGAGAAGTTTTCATCCGCTCCACAATTCAGGTGGCCCGGAAATATGGGTTCCAAGGCCTTGACTTGGACTGGGAGTTTCCAGAAAATGCTGTGGAAATGACAAATCTTGGCTTGCTGTTCGAGCAATGGAGAAGGGCTTTGGATAATGAGGCTAGAGTTACCGGTAAACCCCGTCTACTTTTGACCGCCGCAGTGTATTATGCTTGGAAATTTACCGTTTATGGCGGTCCAAGATCTTATCCGGCCGGGGCAATAAGTAAATATTTGGATTGGGCCAGCCCAATGTGCTTTGACTATCACGGGTCGTGGGATAATTTCACCGGGATGAATGCTGCGTTGTATGATTCCAAGAGTAATATTAGTACCCATTATGGAATCGGGTCGTGGATCGAAGCCGGTGTCCCGCGCAAAAAGCTCGTCATGGGTCTGCCTTTGTACGGGAAAACTTGGACGCTCAGGGACCCGAAAGTGAACGGAATCGGGGCACCGGCTTCGGGTGTTGGGCCGGGGGATGGGATTTTGGTTTACAGCCAAGTAGTTGATTTTAACAGCAGAACTAATGCGACTGTTGTGTTTGATGTCGAATCAGCGTCTTATTATTCTGTATCGGGTAGCACTTGGGTCGGGTATGATGGTGTCCGGTCCGCGAACGTGAAGGTTCGGTACGCTAAGTCTTTGGGCTTGGGCGGATACTTCTTTTGGGCTCTGGGCCAGGACAATGGATGGGACATATCAAAACAAGCTTCTAATGCTTGGAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

379

Amino Acids

41.87

Weight (kDa)

9.18

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 40 - 363 8.8e-69 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014679)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40880 FvH4_2g40880
malus_domestica MD08G1059100.v1.1 MD14G1173400.v1.1 MD15G1037300.v1.1
prunus_persica Prupe.1G391300_v2.0.a1
pyrus_communis pycom15g03440
rosa_chinensis RchiOBHm_Chr6g0299691
rosa_laevigata RLG00000011396
rosa_multiflora Rmu_sc0002895.1_g000010
rosa_roxburghii Rroxscaffold_7G00168440
rosa_rugosa Rorug06G0291600
rosa_samantha Rh6AG402400 Rh6BG410900 Rh6CG416700 Rh6DG403800
rosa_wichuraiana Rw6G035230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 5, 856
AccBSI CCGCTC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 547
AccII CGCG 2 cut(s) 778, 1019
AclWI GGATC 2 cut(s) 90, 767
AcoI YGGCCR 2 cut(s) 291, 615
AcsI RAATTY 4 cut(s) 76, 236, 260, 581
AfaI GTAC 4 cut(s) 201, 736, 809, 1037
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 4 cut(s) 436, 809, 866, 884
AgeI ACCGGT 1 cut(s) 533
AgsI TTSAA 1 cut(s) 336
AjnI CCWGG 2 cut(s) 363, 1083
AluBI AGCT 3 cut(s) 66, 787, 1115
AluI AGCT 3 cut(s) 66, 787, 1115
Alw21I GWGCWC 1 cut(s) 68
AlwI GGATC 2 cut(s) 90, 767
Ama87I CYCGRG 2 cut(s) 67, 372
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 7 cut(s) 291, 405, 427, 615, 645, 875, 1081
ApeKI GCWGC 3 cut(s) 116, 274, 704
ApoI RAATTY 4 cut(s) 76, 236, 260, 581
ArsI GACNNNNNNTTYG 6 cut(s) 213, 245, 756, 774, 788, 806
AsiGI ACCGGT 1 cut(s) 533
AspLEI GCGC 2 cut(s) 274, 780
AspS9I GGNCC 8 cut(s) 279, 406, 599, 645, 832, 875, 1014, 1081
AsuC2I CCSGG 4 cut(s) 409, 619, 694, 879
AsuHPI GGTGA 3 cut(s) 138, 166, 682
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 2 cut(s) 67, 372
AvaII GGWCC 4 cut(s) 279, 599, 832, 1014
BaeGI GKGCMC 2 cut(s) 8, 859
BanI GGYRCC 2 cut(s) 5, 856
BanII GRGCYC 2 cut(s) 68, 1078
BarI GAAGNNNNNNTAC 2 cut(s) 1019, 1051
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 128, 261, 691
BccI CCATC 7 cut(s) 103, 136, 157, 218, 878, 998, 1089
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 6 cut(s) 769, 803, 846, 880, 976, 1010
BciT130I CCWGG 2 cut(s) 365, 1085
BciVI GTATCC 1 cut(s) 1055
BcnI CCSGG 4 cut(s) 409, 619, 694, 879
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 2 cut(s) 156, 312
BfoI RGCGCY 1 cut(s) 275
BfuI GTATCC 1 cut(s) 1055
BglII AGATCT 1 cut(s) 605
BisI GCNGC 5 cut(s) 117, 275, 322, 561, 705
BlsI GCNGC 5 cut(s) 118, 276, 323, 562, 706
Bme1390I CCNGG 6 cut(s) 365, 409, 619, 694, 879, 1085
Bme18I GGWCC 4 cut(s) 279, 599, 832, 1014
BmeT110I CYCGRG 2 cut(s) 67, 372
BmgT120I GGNCC 8 cut(s) 279, 406, 599, 645, 832, 875, 1014, 1081
BmiI GGNNCC 5 cut(s) 7, 422, 833, 834, 858
BmrFI CCNGG 6 cut(s) 365, 409, 619, 694, 879, 1085
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 827
Bpu14I TTCGAA 1 cut(s) 74
BpuMI CCSGG 4 cut(s) 409, 619, 694, 879
BsaJI CCNNGG 4 cut(s) 363, 424, 618, 878
BsaWI WCCGGW 2 cut(s) 533, 1011
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 809, 866, 884
Bse118I RCCGGY 4 cut(s) 289, 533, 767, 859
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 503
BseBI CCWGG 2 cut(s) 365, 1085
BseDI CCNNGG 4 cut(s) 363, 424, 618, 878
BseGI GGATG 7 cut(s) 30, 149, 264, 384, 702, 889, 1100
BseLI CCNNNNNNNGG 4 cut(s) 436, 809, 866, 884
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 1 cut(s) 841
BseNI ACTGG 1 cut(s) 446
BseSI GKGCMC 2 cut(s) 8, 859
BseX3I CGGCCG 2 cut(s) 291, 615
BseXI GCAGC 3 cut(s) 128, 261, 691
Bsh1236I CGCG 2 cut(s) 778, 1019
Bsh1285I CGRYCG 2 cut(s) 294, 618
BshFI GGCC 7 cut(s) 293, 407, 429, 617, 647, 877, 1083
BshNI GGYRCC 2 cut(s) 5, 856
BshTI ACCGGT 1 cut(s) 533
BsiEI CGRYCG 2 cut(s) 294, 618
BsiHKAI GWGCWC 1 cut(s) 68
BsiHKCI CYCGRG 2 cut(s) 67, 372
BslFI GGGAC 3 cut(s) 758, 845, 1112
BslI CCNNNNNNNGG 4 cut(s) 436, 809, 866, 884
BsmFI GGGAC 3 cut(s) 758, 845, 1112
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 7 cut(s) 293, 407, 429, 617, 647, 877, 1083
BsoBI CYCGRG 2 cut(s) 67, 372
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 4 cut(s) 8, 68, 859, 1078
Bsp143I GATC 3 cut(s) 82, 605, 759
BspANI GGCC 7 cut(s) 293, 407, 429, 617, 647, 877, 1083
BspCNI CTCAG 1 cut(s) 840
BspFNI CGCG 2 cut(s) 778, 1019
BspLI GGNNCC 5 cut(s) 7, 422, 833, 834, 858
BspPI GGATC 2 cut(s) 90, 767
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 2 cut(s) 5, 856
BsrBI CCGCTC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 503
BsrFI RCCGGY 4 cut(s) 289, 533, 767, 859
BsrI ACTGG 1 cut(s) 446
BssAI RCCGGY 4 cut(s) 289, 533, 767, 859
BssECI CCNNGG 4 cut(s) 363, 424, 618, 878
BssMI GATC 3 cut(s) 82, 605, 759
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 365, 1085
Bst4CI ACNGT 2 cut(s) 589, 940
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 291, 485, 649
BstDEI CTNAG 2 cut(s) 827, 1041
BstF5I GGATG 7 cut(s) 30, 149, 264, 384, 702, 889, 1100
BstFNI CGCG 2 cut(s) 778, 1019
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 274, 780
BstKTI GATC 3 cut(s) 85, 608, 762
BstMBI GATC 3 cut(s) 82, 605, 759
BstMCI CGRYCG 2 cut(s) 294, 618
BstMWI GCNNNNNNNGC 6 cut(s) 327, 353, 493, 657, 784, 1121
BstNI CCWGG 2 cut(s) 365, 1085
BstSCI CCNGG 6 cut(s) 363, 407, 617, 692, 877, 1083
BstSFI CTRYAG 2 cut(s) 156, 312
BstSLI GKGCMC 2 cut(s) 8, 859
BstUI CGCG 2 cut(s) 778, 1019
BstV1I GCAGC 3 cut(s) 128, 261, 691
BstX2I RGATCY 1 cut(s) 605
BstXI CCANNNNNNTGG 1 cut(s) 1091
BstYI RGATCY 1 cut(s) 605
BstZI CGGCCG 2 cut(s) 291, 615
BsuI GTATCC 1 cut(s) 1055
BsuRI GGCC 7 cut(s) 293, 407, 429, 617, 647, 877, 1083
BtsCI GGATG 7 cut(s) 30, 149, 264, 384, 702, 889, 1100
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 291, 485, 649
CfoI GCGC 2 cut(s) 274, 780
Cfr10I RCCGGY 4 cut(s) 289, 533, 767, 859
Cfr13I GGNCC 8 cut(s) 279, 406, 599, 645, 832, 875, 1014, 1081
CpoI CGGWCCG 1 cut(s) 1014
CseI GACGC 2 cut(s) 832, 951
Csp6I GTAC 4 cut(s) 200, 735, 808, 1036
CspAI ACCGGT 1 cut(s) 533
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CspI CGGWCCG 1 cut(s) 1014
CviAII CATG 2 cut(s) 352, 793
CviQI GTAC 4 cut(s) 200, 735, 808, 1036
DdeI CTNAG 2 cut(s) 827, 1041
DpnI GATC 3 cut(s) 84, 607, 761
DpnII GATC 3 cut(s) 82, 605, 759
EaeI YGGCCR 2 cut(s) 291, 615
EagI CGGCCG 2 cut(s) 291, 615
EciI GGCGGA 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 66
EclXI CGGCCG 2 cut(s) 291, 615
Eco130I CCWWGG 1 cut(s) 424
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 68, 1078
Eco47I GGWCC 4 cut(s) 279, 599, 832, 1014
Eco47III AGCGCT 1 cut(s) 273
Eco52I CGGCCG 2 cut(s) 291, 615
Eco53kI GAGCTC 1 cut(s) 66
Eco88I CYCGRG 2 cut(s) 67, 372
EcoICRI GAGCTC 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 832
EcoRI GAATTC 3 cut(s) 76, 236, 260
EcoRII CCWGG 2 cut(s) 363, 1083
EcoT14I CCWWGG 1 cut(s) 424
EcoT38I GRGCYC 2 cut(s) 68, 1078
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 2 cut(s) 355, 796
FaqI GGGAC 3 cut(s) 758, 845, 1112
FatI CATG 2 cut(s) 351, 792
FauI CCCGC 1 cut(s) 783
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 117, 275, 322, 561, 705
FokI GGATG 7 cut(s) 17, 136, 251, 371, 709, 896, 1107
FriOI GRGCYC 2 cut(s) 68, 1078
Fsp4HI GCNGC 5 cut(s) 117, 275, 322, 561, 705
FspBI CTAG 1 cut(s) 525
GlaI GCGC 2 cut(s) 273, 779
GluI GCNGC 5 cut(s) 117, 275, 322, 561, 705
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 7 cut(s) 293, 407, 429, 617, 647, 877, 1083
HgaI GACGC 2 cut(s) 832, 951
HhaI GCGC 2 cut(s) 274, 780
Hin1II CATG 2 cut(s) 355, 796
Hin6I GCGC 2 cut(s) 272, 778
HinP1I GCGC 2 cut(s) 272, 778
HindIII AAGCTT 1 cut(s) 1113
HinfI GANTC 4 cut(s) 716, 747, 849, 956
HphI GGTGA 3 cut(s) 138, 166, 682
Hpy166II GTNNAC 4 cut(s) 539, 548, 844, 898
Hpy188I TCNGA 2 cut(s) 82, 113
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 4 cut(s) 539, 548, 844, 898
HpyAV CCTTC 3 cut(s) 151, 498, 1021
HpyCH4III ACNGT 2 cut(s) 589, 940
HpyCH4IV ACGT 3 cut(s) 228, 341, 1023
HpyCH4V TGCA 2 cut(s) 101, 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 327, 353, 493, 657, 784, 1121
HpyF3I CTNAG 2 cut(s) 827, 1041
HpySE526I ACGT 3 cut(s) 228, 341, 1023
Hsp92II CATG 2 cut(s) 355, 796
HspAI GCGC 2 cut(s) 272, 778
KflI GGGWCCC 1 cut(s) 832
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Kzo9I GATC 3 cut(s) 82, 605, 759
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 3 cut(s) 128, 261, 691
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 525
MaeII ACGT 3 cut(s) 228, 341, 1023
MaeIII GTNAC 3 cut(s) 229, 295, 529
MalI GATC 3 cut(s) 84, 607, 761
MbiI CCGCTC 1 cut(s) 390
MboI GATC 3 cut(s) 82, 605, 759
MboII GAAGA 1 cut(s) 51
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 4 cut(s) 8, 68, 859, 1078
MluCI AATT 7 cut(s) 76, 236, 260, 331, 396, 581, 685
MnlI CCTC 5 cut(s) 163, 206, 311, 314, 514
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 2 cut(s) 135, 918
MslI CAYNNNNRTG 1 cut(s) 695
MspR9I CCNGG 6 cut(s) 365, 409, 619, 694, 879, 1085
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 2 cut(s) 365, 1085
MvnI CGCG 2 cut(s) 778, 1019
MwoI GCNNNNNNNGC 6 cut(s) 327, 353, 493, 657, 784, 1121
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 4 cut(s) 409, 619, 694, 879
NdeII GATC 3 cut(s) 82, 605, 759
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 355, 796
NlaIV GGNNCC 5 cut(s) 7, 422, 833, 834, 858
NmuCI GTSAC 2 cut(s) 229, 295
NspV TTCGAA 1 cut(s) 74
PceI AGGCCT 1 cut(s) 429
PctI GAATGC 1 cut(s) 706
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 4 cut(s) 716, 747, 849, 956
PinAI ACCGGT 1 cut(s) 533
PkrI GCNGC 5 cut(s) 118, 276, 323, 562, 706
PpuMI RGGWCCY 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 363, 1083
PspGI CCWGG 2 cut(s) 363, 1083
PspN4I GGNNCC 5 cut(s) 7, 422, 833, 834, 858
PspPI GGNCC 8 cut(s) 279, 406, 599, 645, 832, 875, 1014, 1081
PspPPI RGGWCCY 1 cut(s) 832
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 4 cut(s) 201, 736, 809, 1037
RsaNI GTAC 4 cut(s) 200, 735, 808, 1036
RseI CAYNNNNRTG 1 cut(s) 695
Rsr2I CGGWCCG 1 cut(s) 1014
RsrII CGGWCCG 1 cut(s) 1014
SacI GAGCTC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 135, 918
SatI GCNGC 5 cut(s) 117, 275, 322, 561, 705
Sau3AI GATC 3 cut(s) 82, 605, 759
Sau96I GGNCC 8 cut(s) 279, 406, 599, 645, 832, 875, 1014, 1081
ScrFI CCNGG 6 cut(s) 365, 409, 619, 694, 879, 1085
SduI GDGCHC 4 cut(s) 8, 68, 859, 1078
SetI ASST 9 cut(s) 68, 109, 231, 344, 405, 789, 1026, 1032, 1117
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 2 cut(s) 156, 312
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 4 cut(s) 279, 599, 832, 1014
SmiMI CAYNNNNRTG 1 cut(s) 695
Sse9I AATT 7 cut(s) 76, 236, 260, 331, 396, 581, 685
SseBI AGGCCT 1 cut(s) 429
SspI AATATT 2 cut(s) 635, 730
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 6 cut(s) 363, 407, 617, 692, 877, 1083
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 589, 940
TaiI ACGT 3 cut(s) 231, 344, 1026
TaqI TCGA 6 cut(s) 62, 74, 240, 492, 762, 954
TasI AATT 7 cut(s) 76, 236, 260, 331, 396, 581, 685
TauI GCSGC 2 cut(s) 324, 563
TfiI GAWTC 4 cut(s) 716, 747, 849, 956
Tru1I TTAA 2 cut(s) 135, 918
Tru9I TTAA 2 cut(s) 135, 918
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 2 cut(s) 229, 295
TseI GCWGC 3 cut(s) 116, 274, 704
Tsp45I GTSAC 2 cut(s) 229, 295
TspDTI ATGAA 4 cut(s) 19, 253, 373, 713
TspGWI ACGGA 2 cut(s) 248, 861
TspRI CASTG 1 cut(s) 570
VpaK11BI GGWCC 4 cut(s) 279, 599, 832, 1014
XapI RAATTY 4 cut(s) 76, 236, 260, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.