Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006486

Physical Location & Seq

Genomic Coordinates Forward (+)

2126989 .. 2128872

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACCGTTGAGCGGGTACTCGATGAACCCAGAGACCAGTTTCCCATTGGGATGCGTGTGCTTGCTGTAGACGATGATCCCATTTGCCTCAAGCTCTTAGAGGCTCTGCTCCGTAGATGTCAATATCATGTTACGACGACGAGTCAGGCAATCACTGCATTAAAGTTGTTGAGAGAAAACAAGGACAAGTTTGACCTTGTTATCAGTGATGTGCATATGCCAGACATGGATGGATTCAAGCTACTTGAGCTTGTCGGGCTTGAGATGGATCTCCCTGTTATAATGTTGTCTGTAAATGGGGATCACAAGCTTGTGATGAAGGGAATCACCCACGGAGCTTGCGATTACCTCCTAAAACCCGTTCGAATTGAGCAGCTGAAGAACATCTGGCAGCACGTGATCAGAAAGAAGGTTGATTCAAAGGACCAGAACTCTGGCAATCAAGACAAGTCGCACGCTGGAAGTGGCGAAGGAGGACTTGGGTCAGTAGGGATGGGAAACTCAGATCAGAATGCAAAGCTCAATAAGAAACGGAAGGATCAGAATGAGGGCGAGGATGAGGATCATGATGAGGATGAATACGAAAATGACGATCCTTCAACCCAGAAAAAGCCTCGCGTTGTTTGGTCTGTGGAGCTGCATCGCAAATTTGTGGCTGCTGTTAATCAGTTGGGCATTGACAAGGCTGTACCGAAAAAGATTCTAGATTTGATGAATGTTGAAAAGCTTACAAGGGAAAATGTTGCAAGCCATCTCCAGAAGTATAGGCTCTACCTGAAAAGGATCAGCTGTGTGGCAAACCAACAAGCTAATATGGTGGCAGCCTTAGGCACTTCGGATTCTTCATATTTGCGAACAGCTTCTATGAATGGAGTTGGAAATTACCATGCATTGACTGGACCTGTGCAGTTTCATAACAACGGATACAGATCGATCCTACCCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

316

Amino Acids

35.35

Weight (kDa)

6.6

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25180 AT4G31920
fragaria_vesca	FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890
malus_domestica	MD08G1059000.v1.1 MD15G1037400.v1.1
prunus_persica	Prupe.1G391400_v2.0.a1 Prupe.1G391400_v2.0.a1
pyrus_communis	pycom08g04890 pycom15g03450 pycom15g03460
rosa_chinensis	RchiOBHm_Chr6g0299681
rosa_laevigata	RLG00000011397
rosa_multiflora	Rmu_co8516769.1_g000001 Rmu_sc0002895.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168450
rosa_rugosa	Rorug06G0291500
rosa_samantha	Rh6AG402300 Rh6BG410800 Rh6CG416600 Rh6DG403700
rosa_wichuraiana	Rw6G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	618
AciI	CCGC	2 cut(s)	13, 942
AclWI	GGATC	8 cut(s)	71, 276, 309, 546, 570, 587, 791, 928
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	398
AcvI	CACGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	18, 690
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	238, 420, 600, 722
AhdI	GACNNNNNGTC	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	8 cut(s)	71, 276, 309, 546, 570, 587, 791, 928
ApeKI	GCWGC	5 cut(s)	373, 391, 637, 656, 821
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	859
AspS9I	GGNCC	2 cut(s)	424, 899
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	424, 899
AxyI	CCTNAGG	1 cut(s)	826
BbrPI	CACGTG	1 cut(s)	397
BbvI	GCAGC	5 cut(s)	385, 403, 624, 643, 833
BccI	CCATC	4 cut(s)	224, 259, 487, 759
BciVI	GTATCC	1 cut(s)	917
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	917
BisI	GCNGC	5 cut(s)	374, 392, 638, 657, 822
BlsI	GCNGC	5 cut(s)	375, 393, 639, 658, 823
Bme18I	GGWCC	2 cut(s)	424, 899
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	424, 899
BmsI	GCATC	2 cut(s)	42, 649
BoxI	GACNNNNGTC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	740
Bpu14I	TTCGAA	1 cut(s)	364
BpuEI	CTTGAG	3 cut(s)	74, 266, 281
Bsa29I	ATCGAT	1 cut(s)	932
BsaAI	YACGTR	1 cut(s)	397
BsaBI	GATNNNNATC	2 cut(s)	561, 928
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	37, 901
Bse21I	CCTNAGG	1 cut(s)	826
Bse8I	GATNNNNATC	2 cut(s)	561, 928
BseCI	ATCGAT	1 cut(s)	932
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	5 cut(s)	57, 235, 498, 562, 580
BseJI	GATNNNNATC	2 cut(s)	561, 928
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	37, 901
BseXI	GCAGC	5 cut(s)	385, 403, 624, 643, 833
BsgI	GTGCAG	1 cut(s)	926
Bsh1236I	CGCG	1 cut(s)	618
BshVI	ATCGAT	1 cut(s)	932
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	517
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	364
BspACI	CCGC	2 cut(s)	13, 942
BspCNI	CTCAG	1 cut(s)	515
BspDI	ATCGAT	1 cut(s)	932
BspFNI	CGCG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	565
BspPI	GGATC	8 cut(s)	71, 276, 309, 546, 570, 587, 791, 928
BspT104I	TTCGAA	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	37, 901
BssECI	CCNNGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	364
BstC8I	GCNNGC	4 cut(s)	63, 340, 456, 748
BstDEI	CTNAG	3 cut(s)	97, 502, 826
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	5 cut(s)	57, 235, 498, 562, 580
BstFNI	CGCG	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 247, 256
BstPAI	GACNNNNGTC	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	5 cut(s)	385, 403, 624, 643, 833
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	932
Bsu36I	CCTNAGG	1 cut(s)	826
BsuI	GTATCC	1 cut(s)	917
BsuTUI	ATCGAT	1 cut(s)	932
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	5 cut(s)	57, 235, 498, 562, 580
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 211
Cac8I	GCNNGC	4 cut(s)	63, 340, 456, 748
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	424, 899
ClaI	ATCGAT	1 cut(s)	932
Csp6I	GTAC	2 cut(s)	17, 689
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	4 cut(s)	128, 226, 566, 887
CviQI	GTAC	2 cut(s)	17, 689
DdeI	CTNAG	3 cut(s)	97, 502, 826
DriI	GACNNNNNGTC	1 cut(s)	141
Eam1105I	GACNNNNNGTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	424, 899
Eco57I	CTGAAG	1 cut(s)	398
Eco72I	CACGTG	1 cut(s)	397
Eco81I	CCTNAGG	1 cut(s)	826
EcoT22I	ATGCAT	1 cut(s)	892
FaeI	CATG	4 cut(s)	131, 229, 569, 890
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FatI	CATG	4 cut(s)	127, 225, 565, 886
FauI	CCCGC	1 cut(s)	6
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	5 cut(s)	374, 392, 638, 657, 822
FokI	GGATG	5 cut(s)	64, 242, 505, 569, 587
Fsp4HI	GCNGC	5 cut(s)	374, 392, 638, 657, 822
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	5 cut(s)	374, 392, 638, 657, 822
GsuI	CTGGAG	1 cut(s)	740
Hin1II	CATG	4 cut(s)	131, 229, 569, 890
HindIII	AAGCTT	2 cut(s)	308, 725
HinfI	GANTC	6 cut(s)	142, 234, 324, 416, 700, 839
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	5 cut(s)	404, 505, 510, 543, 838
Hpy188III	TCNNGA	4 cut(s)	443, 566, 704, 757
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	139, 142
HpyAV	CCTTC	5 cut(s)	313, 403, 464, 529, 606
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	7 cut(s)	158, 214, 515, 640, 746, 890, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 247, 256
HpyF3I	CTNAG	3 cut(s)	97, 502, 826
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	4 cut(s)	131, 229, 569, 890
Ksp22I	TGATCA	1 cut(s)	399
LmnI	GCTCC	3 cut(s)	114, 335, 634
Lsp1109I	GCAGC	5 cut(s)	385, 403, 624, 643, 833
LweI	GCATC	2 cut(s)	42, 649
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	130
MbiI	CCGCTC	1 cut(s)	13
MboII	GAAGA	2 cut(s)	391, 834
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	3 cut(s)	366, 647, 880
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	856
MnlI	CCTC	9 cut(s)	94, 98, 359, 467, 541, 547, 553, 565, 624
Mph1103I	ATGCAT	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	859
MseI	TTAA	2 cut(s)	161, 663
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	2 cut(s)	376, 789
Mva1269I	GAATGC	1 cut(s)	517
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	3 cut(s)	155, 247, 256
NdeI	CATATG	1 cut(s)	216
NlaIII	CATG	4 cut(s)	131, 229, 569, 890
NsiI	ATGCAT	1 cut(s)	892
NspV	TTCGAA	1 cut(s)	364
PagI	TCATGA	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 588
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	5 cut(s)	234, 324, 416, 700, 839
PkrI	GCNGC	5 cut(s)	375, 393, 639, 658, 823
PleI	GAGTC	1 cut(s)	150
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	281
PspCI	CACGTG	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	424, 899
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	2 cut(s)	376, 789
RsaI	GTAC	2 cut(s)	18, 690
RsaNI	GTAC	2 cut(s)	17, 689
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	161, 663
SatI	GCNGC	5 cut(s)	374, 392, 638, 657, 822
Sau96I	GGNCC	2 cut(s)	424, 899
SchI	GAGTC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	42, 649
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	364
SinI	GGWCC	2 cut(s)	424, 899
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	3 cut(s)	89, 245, 260
SmoI	CTYRAG	3 cut(s)	89, 245, 260
Sse9I	AATT	3 cut(s)	366, 647, 880
SsiI	CCGC	2 cut(s)	13, 942
SspMI	CTAG	1 cut(s)	704
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	3 cut(s)	21, 364, 932
TasI	AATT	3 cut(s)	366, 647, 880
TfiI	GAWTC	5 cut(s)	234, 324, 416, 700, 839
Tru1I	TTAA	2 cut(s)	161, 663
Tru9I	TTAA	2 cut(s)	161, 663
TscAI	CASTG	2 cut(s)	160, 211
TseI	GCWGC	5 cut(s)	373, 391, 637, 656, 821
TspDTI	ATGAA	7 cut(s)	39, 332, 591, 728, 834, 881, 902
TspGWI	ACGGA	4 cut(s)	101, 348, 547, 936
TspRI	CASTG	2 cut(s)	160, 211
VpaK11BI	GGWCC	2 cut(s)	424, 899
XapI	RAATTY	1 cut(s)	647
XbaI	TCTAGA	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	2 cut(s)	44, 893
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	1 cut(s)	704
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.