Rh6DG403700
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
59187739 .. 59191929
4191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG403700.1

Sequence Viewer

Length: 1707 bp
ATGAAGTGTGATATTTTCTTAGTGTTGTCCTCAAATGGAGATAGAGAACTTGTGATGAAGGGAGTAACCCATGGAGCTTGTGATTATCTGGTAAAGCCTGTCCGAATTCAAGAGTTGAAGAACATCTGGCAACATGTTGTCAGGAGAAAGAAGGTTGATTCGAAGGACCAGACAAATTCTGGCAATCAGGACAAGTCTCATATTGGAAATTGTGGTGGAGGCATGGCTAATTCGGATCAGAATGTGAAGCTCAATAAAAAAAGGAAGGATCAGAATGAGGATGAGGATGACAATCGTGATGAGGATGGGTATGACAATGATGATCCTTCAACCCAGAAAAAGCCTCGCGTTGTTTGGTCTGTAGACCTGCATCGCAAGTTTGTTGCTGCTGTTAATAAGTTGGGCATTGACAAGGCTGTACCCAAAAAGATTCTAGATTTGATGAATGAGGATAACCTTACTAGAGAAAATGTGGCAAGCCATCTCCAGAAATTTAGACTATATCTTAAAAGAATCAGTTGCGTAGCAAACCAACAAGCTAATATGATGGCAGCTATAGGCAGTTCGGATTCTTCTTATTTGCGAATGGGTTCTTTCAACGGAGTTCGAAATTACCATGCATTGACTGGACCTGGGCAGTTTAACAACACTGGTTTTAGATCCATGCCACTTAATGGGATGATTGGTAGAGTGAACACTCCTGCTGGTCTGGGTCAGCATTGCCTGCCATCTTCAGGATCAATTAAGTTGGGTCATGGACAACATCCAAGCAACTCGATTCTTGATCAGGGCTTATTTCCTGGAAACCGTAATGGAAGTATGTTTCAAGGAAATTTGGAACTTGATCAACGGCACAGTAAAGGTGCTACCTCCGTGCGGGACCTCTCTGCTGGTATCAATGGTACACCAGTTTTTCCCATTGCCGGTGGTCTTTCAGATGCAAAACTGATTGTCAGTAGATCAAGTGATGCTGTTGGGCTTACAGACGACCCAATCTTAAGACATCCTCGAGATTTTGAAGGTGGAAGAGAATATGTAAACCAGTCTTCACTTTCAGTGGCTCCTTTAAAATCTGAATTTTCTGCCCCCTTTCTGGATCATGGTAGGTTGAATGACAGCTGGTCAAGCGCTGCTCAGTCATCTGCTTTCCGATCAAATTCTTTTTCATCAAGTAATATGAGGGACAATATACCTGTTGTAATGTCCTCGCAACTGCGGAACTGTCAGTTTGATGTTCCTTCTATAAATTCAGTCTCCAGTCAATTGCAGGATCCAAGAACAGAAATGTTGATCCAACCTTCTGCAATTAGTAGCACTGCTGAGCAGATAATTGATAGTGATCCAACTCAGGGGTGGGTGTGGATGGATCATAAGCAGGATTCCCCATACCACCACTCGGATGCTATAAGTAGCTCCATGAACTCTTTGATGCCTGCTAATATTCCCGTGGCTTTTGACCAGAATTTGGACTCAAAAGGCACAACTTTACAAAGAAACATGGACTTCAATTCCATTGGACAGTCAAATTTTCTTGATCCTTTGCACATAAAATTTGATGAGGTTGAAAGATCAGTGGAGGCATCAATGAACTTGAAGCCAGGGTACACTATGGACCAACGGAAGCCACAGGGTGGGCTAGTATCAAATAATTATGGGTTATTGGATGATTTAGTGAGTGCAATGACAAATCAGCTGGAAAAGAGATGA

Protein Analysis

568

Amino Acids

62.61

Weight (kDa)

6.77

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 116 - 165 5.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccB7I CCANNNNNTGG 3 cut(s) 674, 1465, 1631
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 348
AciI CCGC 2 cut(s) 877, 1216
AcuI CTGAAG 1 cut(s) 717
AdeI CACNNNGTG 1 cut(s) 1631
AfaI GTAC 3 cut(s) 420, 904, 1604
AfeI AGCGCT 1 cut(s) 1129
AfiI CCNNNNNNNGG 9 cut(s) 674, 734, 876, 923, 1093, 1349, 1396, 1465, 1631
AflII CTTAAG 1 cut(s) 997
AflIII ACRYGT 1 cut(s) 133
AhdI GACNNNNNGTC 1 cut(s) 1120
AjnI CCWGG 3 cut(s) 631, 799, 1597
AluBI AGCT 7 cut(s) 77, 250, 539, 554, 1119, 1413, 1693
AluI AGCT 7 cut(s) 77, 250, 539, 554, 1119, 1413, 1693
Alw26I GTCTC 2 cut(s) 201, 1258
Ama87I CYCGRG 1 cut(s) 1008
Aor51HI AGCGCT 1 cut(s) 1129
ApeKI GCWGC 3 cut(s) 386, 551, 1130
Asp700I GAANNNNTTC 1 cut(s) 589
AspLEI GCGC 1 cut(s) 1130
AspS9I GGNCC 4 cut(s) 166, 629, 880, 1612
AsuII TTCGAA 2 cut(s) 161, 607
AvaI CYCGRG 1 cut(s) 1008
AvaII GGWCC 4 cut(s) 166, 629, 880, 1612
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BamHI GGATCC 1 cut(s) 1270
BarI GAAGNNNNNNTAC 2 cut(s) 1586, 1618
BbsI GAAGAC 1 cut(s) 1038
BbvI GCAGC 3 cut(s) 373, 563, 1117
BccI CCATC 5 cut(s) 299, 489, 541, 736, 1357
BceAI ACGGC 1 cut(s) 866
BciT130I CCWGG 3 cut(s) 633, 801, 1599
BclI TGATCA 2 cut(s) 784, 844
BcoDI GTCTC 2 cut(s) 201, 1258
BfaI CTAG 3 cut(s) 434, 462, 1637
BfmI CTRYAG 2 cut(s) 360, 555
BfoI RGCGCY 1 cut(s) 1131
BfrI CTTAAG 1 cut(s) 997
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 387, 552, 1131
BlpI GCTNAGC 1 cut(s) 1320
BlsI GCNGC 3 cut(s) 388, 553, 1132
Bme1390I CCNGG 3 cut(s) 633, 801, 1599
Bme18I GGWCC 4 cut(s) 166, 629, 880, 1612
BmeRI GACNNNNNGTC 1 cut(s) 1120
BmeT110I CYCGRG 1 cut(s) 1008
BmgT120I GGNCC 4 cut(s) 166, 629, 880, 1612
BmiI GGNNCC 3 cut(s) 881, 1062, 1272
BmrFI CCNGG 3 cut(s) 633, 801, 1599
BmsI GCATC 6 cut(s) 379, 928, 958, 1390, 1419, 1589
BpiI GAAGAC 1 cut(s) 1038
BpmI CTGGAG 2 cut(s) 470, 1240
Bpu1102I GCTNAGC 1 cut(s) 1320
Bpu14I TTCGAA 2 cut(s) 161, 607
BsaBI GATNNNNATC 2 cut(s) 291, 1338
BsaJI CCNNGG 4 cut(s) 70, 632, 1446, 1598
Bsc4I CCNNNNNNNGG 9 cut(s) 674, 734, 876, 923, 1093, 1349, 1396, 1465, 1631
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 5 cut(s) 631, 655, 908, 1042, 1257
Bse3DI GCAATG 3 cut(s) 718, 918, 1686
Bse8I GATNNNNATC 2 cut(s) 291, 1338
BseBI CCWGG 3 cut(s) 633, 801, 1599
BseDI CCNNGG 4 cut(s) 70, 632, 1446, 1598
BseGI GGATG 9 cut(s) 286, 292, 310, 684, 763, 1003, 1368, 1405, 1669
BseJI GATNNNNATC 2 cut(s) 291, 1338
BseLI CCNNNNNNNGG 9 cut(s) 674, 734, 876, 923, 1093, 1349, 1396, 1465, 1631
BseMI GCAATG 3 cut(s) 718, 918, 1686
BseMII CTCAG 3 cut(s) 1148, 1311, 1361
BseNI ACTGG 5 cut(s) 631, 655, 908, 1042, 1257
BseXI GCAGC 3 cut(s) 373, 563, 1117
Bsh1236I CGCG 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 1008
BsiSI CCGG 1 cut(s) 924
BslFI GGGAC 2 cut(s) 893, 1196
BslI CCNNNNNNNGG 9 cut(s) 674, 734, 876, 923, 1093, 1349, 1396, 1465, 1631
BsmAI GTCTC 2 cut(s) 201, 1258
BsmFI GGGAC 2 cut(s) 893, 1196
BsoBI CYCGRG 1 cut(s) 1008
Bsp119I TTCGAA 2 cut(s) 161, 607
Bsp1720I GCTNAGC 1 cut(s) 1320
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 877, 1216
BspCNI CTCAG 3 cut(s) 1147, 1312, 1360
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 881, 1062, 1272
BspMI ACCTGC 1 cut(s) 375
BspT104I TTCGAA 2 cut(s) 161, 607
BspTI CTTAAG 1 cut(s) 997
BsrDI GCAATG 3 cut(s) 718, 918, 1686
BsrFI RCCGGY 1 cut(s) 923
BsrI ACTGG 5 cut(s) 631, 655, 908, 1042, 1257
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 4 cut(s) 70, 632, 1446, 1598
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 3 cut(s) 633, 801, 1599
Bst4CI ACNGT 4 cut(s) 809, 857, 1223, 1521
Bst6I CTCTTC 1 cut(s) 1021
BstAFI CTTAAG 1 cut(s) 997
BstAPI GCANNNNNTGC 1 cut(s) 724
BstBI TTCGAA 2 cut(s) 161, 607
BstC8I GCNNGC 3 cut(s) 478, 725, 1434
BstDEI CTNAG 4 cut(s) 19, 1134, 1320, 1347
BstDSI CCRYGG 2 cut(s) 70, 1446
BstF5I GGATG 9 cut(s) 286, 292, 310, 684, 763, 1003, 1368, 1405, 1669
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 1131
BstHHI GCGC 1 cut(s) 1130
BstMAI GTCTC 2 cut(s) 201, 1258
BstMWI GCNNNNNNNGC 2 cut(s) 724, 1125
BstNI CCWGG 3 cut(s) 633, 801, 1599
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 631, 799, 1597
BstSFI CTRYAG 2 cut(s) 360, 555
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 373, 563, 1117
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 659, 1270
BstYI RGATCY 2 cut(s) 659, 1270
BtgI CCRYGG 2 cut(s) 70, 1446
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 9 cut(s) 286, 292, 310, 684, 763, 1003, 1368, 1405, 1669
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 4 cut(s) 648, 1062, 1314, 1578
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 478, 725, 1434
CfoI GCGC 1 cut(s) 1130
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 4 cut(s) 166, 629, 880, 1612
Csp6I GTAC 3 cut(s) 419, 903, 1603
CviAII CATG 9 cut(s) 71, 134, 223, 617, 664, 755, 1100, 1417, 1498
CviQI GTAC 3 cut(s) 419, 903, 1603
DdeI CTNAG 4 cut(s) 19, 1134, 1320, 1347
DraI TTTAAA 1 cut(s) 1068
DraIII CACNNNGTG 1 cut(s) 1631
DriI GACNNNNNGTC 1 cut(s) 1120
Eam1104I CTCTTC 1 cut(s) 1021
Eam1105I GACNNNNNGTC 1 cut(s) 1120
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 4 cut(s) 166, 629, 880, 1612
Eco47III AGCGCT 1 cut(s) 1129
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 1008
EcoO109I RGGNCCY 1 cut(s) 880
EcoRI GAATTC 1 cut(s) 105
EcoRII CCWGG 3 cut(s) 631, 799, 1597
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 9 cut(s) 74, 137, 226, 620, 667, 758, 1103, 1420, 1501
FaqI GGGAC 2 cut(s) 893, 1196
FatI CATG 9 cut(s) 70, 133, 222, 616, 663, 754, 1099, 1416, 1497
FauI CCCGC 1 cut(s) 870
FbaI TGATCA 2 cut(s) 784, 844
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 387, 552, 1131
FokI GGATG 9 cut(s) 293, 299, 317, 691, 750, 990, 1375, 1412, 1676
Fsp4HI GCNGC 3 cut(s) 387, 552, 1131
FspBI CTAG 3 cut(s) 434, 462, 1637
GlaI GCGC 1 cut(s) 1129
GluI GCNGC 3 cut(s) 387, 552, 1131
GsuI CTGGAG 2 cut(s) 470, 1240
HaeII RGCGCY 1 cut(s) 1131
HapII CCGG 1 cut(s) 924
HhaI GCGC 1 cut(s) 1130
Hin1II CATG 9 cut(s) 74, 137, 226, 620, 667, 758, 1103, 1420, 1501
Hin6I GCGC 1 cut(s) 1128
HinP1I GCGC 1 cut(s) 1128
HinfI GANTC 7 cut(s) 158, 430, 513, 569, 778, 1379, 1469
HpaII CCGG 1 cut(s) 924
Hpy166II GTNNAC 5 cut(s) 364, 694, 905, 1039, 1605
Hpy188I TCNGA 9 cut(s) 104, 235, 240, 273, 568, 937, 1075, 1151, 1399
Hpy8I GTNNAC 5 cut(s) 364, 694, 905, 1039, 1605
HpyAV CCTTC 8 cut(s) 52, 145, 157, 259, 336, 1013, 1248, 1308
HpyCH4III ACNGT 4 cut(s) 809, 857, 1223, 1521
HpyCH4V TGCA 7 cut(s) 370, 620, 941, 1267, 1304, 1543, 1679
HpyF10VI GCNNNNNNNGC 2 cut(s) 724, 1125
HpyF3I CTNAG 4 cut(s) 19, 1134, 1320, 1347
Hsp92II CATG 9 cut(s) 74, 137, 226, 620, 667, 758, 1103, 1420, 1501
HspAI GCGC 1 cut(s) 1128
Ksp22I TGATCA 2 cut(s) 784, 844
LmnI GCTCC 3 cut(s) 74, 1066, 1418
Lsp1109I GCAGC 3 cut(s) 373, 563, 1117
LweI GCATC 6 cut(s) 379, 928, 958, 1390, 1419, 1589
MaeI CTAG 3 cut(s) 434, 462, 1637
MaeIII GTNAC 1 cut(s) 64
MboII GAAGA 5 cut(s) 130, 564, 723, 1038, 1038
MfeI CAATTG 1 cut(s) 1262
MflI RGATCY 2 cut(s) 659, 1270
MlyI GAGTC 1 cut(s) 1463
MmeI TCCRAC 2 cut(s) 1318, 1367
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 7 cut(s) 393, 507, 642, 672, 744, 998, 1067
MslI CAYNNNNRTG 1 cut(s) 1398
MspA1I CMGCKG 2 cut(s) 1119, 1693
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 1 cut(s) 924
MspR9I CCNGG 3 cut(s) 633, 801, 1599
MunI CAATTG 1 cut(s) 1262
MvaI CCWGG 3 cut(s) 633, 801, 1599
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 724, 1125
NcoI CCATGG 1 cut(s) 70
NlaIII CATG 9 cut(s) 74, 137, 226, 620, 667, 758, 1103, 1420, 1501
NlaIV GGNNCC 3 cut(s) 881, 1062, 1272
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 137
NspV TTCGAA 2 cut(s) 161, 607
PaeR7I CTCGAG 1 cut(s) 1008
PciI ACATGT 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 6 cut(s) 158, 430, 513, 569, 778, 1379
PflMI CCANNNNNTGG 3 cut(s) 674, 1465, 1631
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 3 cut(s) 388, 553, 1132
PleI GAGTC 1 cut(s) 1463
PpsI GAGTC 1 cut(s) 1463
PpuMI RGGWCCY 1 cut(s) 880
PscI ACATGT 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 880
Psp6I CCWGG 3 cut(s) 631, 799, 1597
PspGI CCWGG 3 cut(s) 631, 799, 1597
PspN4I GGNNCC 3 cut(s) 881, 1062, 1272
PspPI GGNCC 4 cut(s) 166, 629, 880, 1612
PspPPI RGGWCCY 1 cut(s) 880
PsuI RGATCY 2 cut(s) 659, 1270
PvuII CAGCTG 2 cut(s) 1119, 1693
RsaI GTAC 3 cut(s) 420, 904, 1604
RsaNI GTAC 3 cut(s) 419, 903, 1603
RseI CAYNNNNRTG 1 cut(s) 1398
SaqAI TTAA 7 cut(s) 393, 507, 642, 672, 744, 998, 1067
SatI GCNGC 3 cut(s) 387, 552, 1131
Sau96I GGNCC 4 cut(s) 166, 629, 880, 1612
SchI GAGTC 1 cut(s) 1463
ScrFI CCNGG 3 cut(s) 633, 801, 1599
SfaNI GCATC 6 cut(s) 379, 928, 958, 1390, 1419, 1589
SfcI CTRYAG 2 cut(s) 360, 555
Sfr274I CTCGAG 1 cut(s) 1008
SfuI TTCGAA 2 cut(s) 161, 607
SinI GGWCC 4 cut(s) 166, 629, 880, 1612
SlaI CTCGAG 1 cut(s) 1008
SmiMI CAYNNNNRTG 1 cut(s) 1398
SmlI CTYRAG 2 cut(s) 997, 1008
SmoI CTYRAG 2 cut(s) 997, 1008
SsiI CCGC 2 cut(s) 877, 1216
SspI AATATT 1 cut(s) 1441
SspMI CTAG 3 cut(s) 434, 462, 1637
StyD4I CCNGG 3 cut(s) 631, 799, 1597
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 4 cut(s) 809, 857, 1223, 1521
TaqI TCGA 4 cut(s) 161, 607, 776, 1009
TfiI GAWTC 6 cut(s) 158, 430, 513, 569, 778, 1379
Tru1I TTAA 7 cut(s) 393, 507, 642, 672, 744, 998, 1067
Tru9I TTAA 7 cut(s) 393, 507, 642, 672, 744, 998, 1067
TscAI CASTG 4 cut(s) 655, 1062, 1321, 1578
TseI GCWGC 3 cut(s) 386, 551, 1130
TspDTI ATGAA 6 cut(s) 17, 71, 458, 1155, 1433, 1601
TspGWI ACGGA 3 cut(s) 615, 862, 1633
TspRI CASTG 4 cut(s) 655, 1062, 1321, 1578
Van91I CCANNNNNTGG 3 cut(s) 674, 1465, 1631
Vha464I CTTAAG 1 cut(s) 997
VpaK11BI GGWCC 4 cut(s) 166, 629, 880, 1612
XbaI TCTAGA 1 cut(s) 433
XceI RCATGY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 3 cut(s) 176, 623, 1350
XhoI CTCGAG 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 3 cut(s) 434, 462, 1637
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.