Rh6AG402300
MYB Family

two-component response regulator

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
59962013 .. 59966281
4269 bp
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UTR
Exon/CDS
Intron
Rh6AG402300.1

Sequence Viewer

Length: 1653 bp
ATGAAGGGAGTAACCCATGGAGCTTGTGATTATCTGGTAAAGCCTGTCCGAATTCAAGAGTTGAAGAACATCTGGCAACATGTTGTCAGGAGAAAGAAGGTTGATTCGAAGGACCAGACAAATTCTGGCAATCAGGACAAGTCTCATATTGGAAATTGTGGTGGAGGCATGGCTAATTCGGATCAGAATGTGAAGCTCAATAAAAAAAGGAAGGATCAGAATGAGGATGAGGATGACAATCGTGATGAGGATGGGTATGACAATGATGATCCTTCAACCCAGAAAAAACCTCGTGTTGTTTGGTCTGTAGACCTGCATCGCAAGTTTGTTGCTGCTGTTAATAAGTTGGGCATTGACAAGGCTGTACCCAAAAAGATTCTAGATTTGATGAATGAGGATAAACTTACTAGAGAAAATGTGGCAAGCCATCTCCAGAAATTTAGACTATATCTTAAAAGAATCAGTTGCGTAGCAAACCAACAAGCTAATATGATGGCAGCTATAGGCAGTTCGGATTCTTCTTATTTGCGAATGGGTTCTTTCAACGGAGTTCGAAATTACCATGCATTGACTGGACCTGGGCAGTTTAACAACACTGGTTTTAGATCCATGCCACTTAATGGGATGATTGGTAGAGTGAACACTCCTGCTGGTCTGGGTCAGCATTGCCTGCCATCTTCAGGATCAATTAAGTTGGGTCATGGACAACATCCAAGCAACTCGATTCTTGATCAGGGCTTATTTCCTGGAAACCGTAATGGAAGTATGTTTCAAGGAAATTTGGAACTTGATCAACGGCACAGTAAAGGTTCTACCTCTGTGCGGGACCTCTCTGCTGGTATCAATGGTACACCAGTTTTTCCCATTCCCGGTGGACTTTCAGACGCAAAACTGATTGTCAGTAGATCAAGTGATGCTGTTGGGCTTACAGACGATTTAATCTTAAGACATCCTCGAGATTTTGAAGGTGGACGAGAATATGTAAACCAGTCTTCACTTTCAGTGGCTCCTTTAAAATCTGAATTTTCTGCCCCCTTTCTGGATCATGGTAGGTTGAATGACAGCTGGTCAAGCGCTGCTCAGTCATCTGCTTTCCGATCAAATTCTTTTCCATCAAGTAATACGAGGGACAATATACCTGTTGTAATGTCCTCGCAACTGCGGAACTGTCAGTTTGATGTTCCTTCAATAAATTCAGTCTCCAGTCAATTGCAGGATCCAAGAACAGAATTGCTGATCCAACCTTCTGCAATTAGTAGCACTGCTGAGCAGATAATTGATAGTGATCCAACTCAGGGGTGGGTGTGGATGGATCATAAGCAGGATTCCCCATACCACCACTCGGATGCTATAAGTAGCTCCATGAACTCTTTGATGCCTGCTAATATTCCCGTGGCTTTTGACCAGAATTTGGACTCAAAAGGCACAACTTTACAAAGAAACATGGACTTCAATTCCATTGGACAGTCAAATTTTCTTGATCCTTTGCACATAAAATTTGATGAGGTTGAAAGATCAGTGGAGGCATCAATGAACTTGAAGCCAGGGTACACTATGGACCAACGGAAGCCACAGGGAGGGCTAGTATCAAATAATTATGGGTTATTGGATGATTTGGTGAGTGCAATGACAAATCAGCTGGAAAAGAGATGA

Protein Analysis

550

Amino Acids

60.62

Weight (kDa)

7.28

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 98 - 147 1.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 321
AccB7I CCANNNNNTGG 2 cut(s) 620, 1411
AccI GTMKAC 1 cut(s) 309
AciI CCGC 2 cut(s) 823, 1162
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 3 cut(s) 366, 850, 1550
AfeI AGCGCT 1 cut(s) 1075
AfiI CCNNNNNNNGG 9 cut(s) 620, 680, 822, 869, 1039, 1295, 1342, 1411, 1577
AflII CTTAAG 1 cut(s) 943
AflIII ACRYGT 1 cut(s) 79
AhdI GACNNNNNGTC 1 cut(s) 1066
AjnI CCWGG 3 cut(s) 577, 745, 1543
AluBI AGCT 7 cut(s) 23, 196, 485, 500, 1065, 1359, 1639
AluI AGCT 7 cut(s) 23, 196, 485, 500, 1065, 1359, 1639
Alw26I GTCTC 2 cut(s) 147, 1204
Ama87I CYCGRG 1 cut(s) 954
Aor51HI AGCGCT 1 cut(s) 1075
ApeKI GCWGC 3 cut(s) 332, 497, 1076
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 1076
AspS9I GGNCC 4 cut(s) 112, 575, 826, 1558
AsuC2I CCSGG 1 cut(s) 870
AsuHPI GGTGA 1 cut(s) 1630
AsuII TTCGAA 2 cut(s) 107, 553
AvaI CYCGRG 1 cut(s) 954
AvaII GGWCC 4 cut(s) 112, 575, 826, 1558
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BamHI GGATCC 1 cut(s) 1216
BarI GAAGNNNNNNTAC 2 cut(s) 1532, 1564
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 984
BbvI GCAGC 3 cut(s) 319, 509, 1063
BccI CCATC 6 cut(s) 245, 435, 487, 682, 1120, 1303
BceAI ACGGC 1 cut(s) 812
BciT130I CCWGG 3 cut(s) 579, 747, 1545
BclI TGATCA 2 cut(s) 730, 790
BcnI CCSGG 1 cut(s) 870
BcoDI GTCTC 2 cut(s) 147, 1204
BfaI CTAG 3 cut(s) 380, 408, 1583
BfmI CTRYAG 2 cut(s) 306, 501
BfoI RGCGCY 1 cut(s) 1077
BfrI CTTAAG 1 cut(s) 943
BfuAI ACCTGC 1 cut(s) 321
BisI GCNGC 3 cut(s) 333, 498, 1077
BlpI GCTNAGC 1 cut(s) 1266
BlsI GCNGC 3 cut(s) 334, 499, 1078
Bme1390I CCNGG 4 cut(s) 579, 747, 870, 1545
Bme18I GGWCC 4 cut(s) 112, 575, 826, 1558
BmeRI GACNNNNNGTC 1 cut(s) 1066
BmeT110I CYCGRG 1 cut(s) 954
BmgT120I GGNCC 4 cut(s) 112, 575, 826, 1558
BmiI GGNNCC 3 cut(s) 827, 1008, 1218
BmrFI CCNGG 4 cut(s) 579, 747, 870, 1545
BmsI GCATC 5 cut(s) 325, 904, 1336, 1365, 1535
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 2 cut(s) 416, 1186
Bpu1102I GCTNAGC 1 cut(s) 1266
Bpu14I TTCGAA 2 cut(s) 107, 553
BpuMI CCSGG 1 cut(s) 870
BsaBI GATNNNNATC 2 cut(s) 237, 1284
BsaJI CCNNGG 4 cut(s) 16, 578, 1392, 1544
BsaXI ACNNNNNCTCC 2 cut(s) 1569, 1599
Bsc4I CCNNNNNNNGG 9 cut(s) 620, 680, 822, 869, 1039, 1295, 1342, 1411, 1577
Bse1I ACTGG 5 cut(s) 577, 601, 854, 988, 1203
Bse3DI GCAATG 2 cut(s) 664, 1632
Bse8I GATNNNNATC 2 cut(s) 237, 1284
BseBI CCWGG 3 cut(s) 579, 747, 1545
BseDI CCNNGG 4 cut(s) 16, 578, 1392, 1544
BseGI GGATG 9 cut(s) 232, 238, 256, 630, 709, 949, 1314, 1351, 1615
BseJI GATNNNNATC 2 cut(s) 237, 1284
BseLI CCNNNNNNNGG 9 cut(s) 620, 680, 822, 869, 1039, 1295, 1342, 1411, 1577
BseMI GCAATG 2 cut(s) 664, 1632
BseMII CTCAG 3 cut(s) 1094, 1257, 1307
BseNI ACTGG 5 cut(s) 577, 601, 854, 988, 1203
BseXI GCAGC 3 cut(s) 319, 509, 1063
BsiHKCI CYCGRG 1 cut(s) 954
BsiSI CCGG 1 cut(s) 870
BslFI GGGAC 2 cut(s) 839, 1142
BslI CCNNNNNNNGG 9 cut(s) 620, 680, 822, 869, 1039, 1295, 1342, 1411, 1577
BsmAI GTCTC 2 cut(s) 147, 1204
BsmFI GGGAC 2 cut(s) 839, 1142
BsoBI CYCGRG 1 cut(s) 954
Bsp119I TTCGAA 2 cut(s) 107, 553
Bsp1720I GCTNAGC 1 cut(s) 1266
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 2 cut(s) 823, 1162
BspCNI CTCAG 3 cut(s) 1093, 1258, 1306
BspLI GGNNCC 3 cut(s) 827, 1008, 1218
BspMI ACCTGC 1 cut(s) 321
BspT104I TTCGAA 2 cut(s) 107, 553
BspTI CTTAAG 1 cut(s) 943
BsrDI GCAATG 2 cut(s) 664, 1632
BsrI ACTGG 5 cut(s) 577, 601, 854, 988, 1203
BssECI CCNNGG 4 cut(s) 16, 578, 1392, 1544
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 579, 747, 1545
Bst4CI ACNGT 4 cut(s) 755, 803, 1169, 1467
BstAFI CTTAAG 1 cut(s) 943
BstAPI GCANNNNNTGC 1 cut(s) 670
BstBI TTCGAA 2 cut(s) 107, 553
BstC8I GCNNGC 3 cut(s) 424, 671, 1380
BstDEI CTNAG 3 cut(s) 1080, 1266, 1293
BstDSI CCRYGG 2 cut(s) 16, 1392
BstF5I GGATG 9 cut(s) 232, 238, 256, 630, 709, 949, 1314, 1351, 1615
BstH2I RGCGCY 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1076
BstMAI GTCTC 2 cut(s) 147, 1204
BstMWI GCNNNNNNNGC 2 cut(s) 670, 1071
BstNI CCWGG 3 cut(s) 579, 747, 1545
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 4 cut(s) 577, 745, 868, 1543
BstSFI CTRYAG 2 cut(s) 306, 501
BstV1I GCAGC 3 cut(s) 319, 509, 1063
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 2 cut(s) 605, 1216
BstYI RGATCY 2 cut(s) 605, 1216
BtgI CCRYGG 2 cut(s) 16, 1392
BtgZI GCGATG 1 cut(s) 302
BtsCI GGATG 9 cut(s) 232, 238, 256, 630, 709, 949, 1314, 1351, 1615
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 4 cut(s) 594, 1008, 1260, 1524
BveI ACCTGC 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 424, 671, 1380
CfoI GCGC 1 cut(s) 1076
Cfr13I GGNCC 4 cut(s) 112, 575, 826, 1558
CseI GACGC 1 cut(s) 893
Csp6I GTAC 3 cut(s) 365, 849, 1549
CviAII CATG 9 cut(s) 17, 80, 169, 563, 610, 701, 1046, 1363, 1444
CviQI GTAC 3 cut(s) 365, 849, 1549
DdeI CTNAG 3 cut(s) 1080, 1266, 1293
DraI TTTAAA 1 cut(s) 1014
DriI GACNNNNNGTC 1 cut(s) 1066
Eam1105I GACNNNNNGTC 1 cut(s) 1066
Eco130I CCWWGG 1 cut(s) 16
Eco47I GGWCC 4 cut(s) 112, 575, 826, 1558
Eco47III AGCGCT 1 cut(s) 1075
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 954
EcoO109I RGGNCCY 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 3 cut(s) 577, 745, 1543
EcoT14I CCWWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 9 cut(s) 20, 83, 172, 566, 613, 704, 1049, 1366, 1447
FaqI GGGAC 2 cut(s) 839, 1142
FatI CATG 9 cut(s) 16, 79, 168, 562, 609, 700, 1045, 1362, 1443
FauI CCCGC 1 cut(s) 816
FbaI TGATCA 2 cut(s) 730, 790
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 333, 498, 1077
FokI GGATG 9 cut(s) 239, 245, 263, 637, 696, 936, 1321, 1358, 1622
Fsp4HI GCNGC 3 cut(s) 333, 498, 1077
FspBI CTAG 3 cut(s) 380, 408, 1583
GlaI GCGC 1 cut(s) 1075
GluI GCNGC 3 cut(s) 333, 498, 1077
GsuI CTGGAG 2 cut(s) 416, 1186
HaeII RGCGCY 1 cut(s) 1077
HapII CCGG 1 cut(s) 870
HgaI GACGC 1 cut(s) 893
HhaI GCGC 1 cut(s) 1076
Hin1II CATG 9 cut(s) 20, 83, 172, 566, 613, 704, 1049, 1366, 1447
Hin6I GCGC 1 cut(s) 1074
HinP1I GCGC 1 cut(s) 1074
HinfI GANTC 7 cut(s) 104, 376, 459, 515, 724, 1325, 1415
HpaII CCGG 1 cut(s) 870
HphI GGTGA 1 cut(s) 1630
Hpy166II GTNNAC 7 cut(s) 310, 640, 851, 875, 971, 985, 1551
Hpy188I TCNGA 9 cut(s) 50, 181, 186, 219, 514, 883, 1021, 1097, 1345
Hpy8I GTNNAC 7 cut(s) 310, 640, 851, 875, 971, 985, 1551
HpyAV CCTTC 7 cut(s) 91, 103, 205, 282, 959, 1194, 1254
HpyCH4III ACNGT 4 cut(s) 755, 803, 1169, 1467
HpyCH4V TGCA 6 cut(s) 316, 566, 1213, 1250, 1489, 1625
HpyF10VI GCNNNNNNNGC 2 cut(s) 670, 1071
HpyF3I CTNAG 3 cut(s) 1080, 1266, 1293
Hsp92II CATG 9 cut(s) 20, 83, 172, 566, 613, 704, 1049, 1366, 1447
HspAI GCGC 1 cut(s) 1074
Ksp22I TGATCA 2 cut(s) 730, 790
LmnI GCTCC 3 cut(s) 20, 1012, 1364
Lsp1109I GCAGC 3 cut(s) 319, 509, 1063
LweI GCATC 5 cut(s) 325, 904, 1336, 1365, 1535
MaeI CTAG 3 cut(s) 380, 408, 1583
MaeIII GTNAC 1 cut(s) 10
MboII GAAGA 4 cut(s) 76, 510, 669, 984
MfeI CAATTG 1 cut(s) 1208
MflI RGATCY 2 cut(s) 605, 1216
MlyI GAGTC 1 cut(s) 1409
MmeI TCCRAC 2 cut(s) 1264, 1313
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 8 cut(s) 339, 453, 588, 618, 690, 938, 944, 1013
MslI CAYNNNNRTG 1 cut(s) 1344
MspA1I CMGCKG 2 cut(s) 1065, 1639
MspCI CTTAAG 1 cut(s) 943
MspI CCGG 1 cut(s) 870
MspR9I CCNGG 4 cut(s) 579, 747, 870, 1545
MunI CAATTG 1 cut(s) 1208
MvaI CCWGG 3 cut(s) 579, 747, 1545
MwoI GCNNNNNNNGC 2 cut(s) 670, 1071
NciI CCSGG 1 cut(s) 870
NcoI CCATGG 1 cut(s) 16
NlaIII CATG 9 cut(s) 20, 83, 172, 566, 613, 704, 1049, 1366, 1447
NlaIV GGNNCC 3 cut(s) 827, 1008, 1218
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 83
NspV TTCGAA 2 cut(s) 107, 553
PaeR7I CTCGAG 1 cut(s) 954
PciI ACATGT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 6 cut(s) 104, 376, 459, 515, 724, 1325
PflMI CCANNNNNTGG 2 cut(s) 620, 1411
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 3 cut(s) 334, 499, 1078
PleI GAGTC 1 cut(s) 1409
PpsI GAGTC 1 cut(s) 1409
PpuMI RGGWCCY 1 cut(s) 826
PscI ACATGT 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 826
Psp6I CCWGG 3 cut(s) 577, 745, 1543
PspGI CCWGG 3 cut(s) 577, 745, 1543
PspN4I GGNNCC 3 cut(s) 827, 1008, 1218
PspPI GGNCC 4 cut(s) 112, 575, 826, 1558
PspPPI RGGWCCY 1 cut(s) 826
PsuI RGATCY 2 cut(s) 605, 1216
PvuII CAGCTG 2 cut(s) 1065, 1639
RsaI GTAC 3 cut(s) 366, 850, 1550
RsaNI GTAC 3 cut(s) 365, 849, 1549
RseI CAYNNNNRTG 1 cut(s) 1344
SaqAI TTAA 8 cut(s) 339, 453, 588, 618, 690, 938, 944, 1013
SatI GCNGC 3 cut(s) 333, 498, 1077
Sau96I GGNCC 4 cut(s) 112, 575, 826, 1558
SchI GAGTC 1 cut(s) 1409
ScrFI CCNGG 4 cut(s) 579, 747, 870, 1545
SfaNI GCATC 5 cut(s) 325, 904, 1336, 1365, 1535
SfcI CTRYAG 2 cut(s) 306, 501
Sfr274I CTCGAG 1 cut(s) 954
SfuI TTCGAA 2 cut(s) 107, 553
SinI GGWCC 4 cut(s) 112, 575, 826, 1558
SlaI CTCGAG 1 cut(s) 954
SmiMI CAYNNNNRTG 1 cut(s) 1344
SmlI CTYRAG 2 cut(s) 943, 954
SmoI CTYRAG 2 cut(s) 943, 954
SsiI CCGC 2 cut(s) 823, 1162
SspI AATATT 1 cut(s) 1387
SspMI CTAG 3 cut(s) 380, 408, 1583
StyD4I CCNGG 4 cut(s) 577, 745, 868, 1543
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 4 cut(s) 755, 803, 1169, 1467
TaqI TCGA 4 cut(s) 107, 553, 722, 955
TfiI GAWTC 6 cut(s) 104, 376, 459, 515, 724, 1325
Tru1I TTAA 8 cut(s) 339, 453, 588, 618, 690, 938, 944, 1013
Tru9I TTAA 8 cut(s) 339, 453, 588, 618, 690, 938, 944, 1013
TscAI CASTG 4 cut(s) 601, 1008, 1267, 1524
TseI GCWGC 3 cut(s) 332, 497, 1076
TspDTI ATGAA 4 cut(s) 17, 404, 1379, 1547
TspGWI ACGGA 2 cut(s) 561, 1579
TspRI CASTG 4 cut(s) 601, 1008, 1267, 1524
Van91I CCANNNNNTGG 2 cut(s) 620, 1411
Vha464I CTTAAG 1 cut(s) 943
VpaK11BI GGWCC 4 cut(s) 112, 575, 826, 1558
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 3 cut(s) 122, 569, 1296
XhoI CTCGAG 1 cut(s) 954
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 3 cut(s) 380, 408, 1583
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.