Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8516769.1

Orthogroup ID

OG0006486

Physical Location & Seq

Genomic Coordinates Forward (+)

80 .. 1790

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8516769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

atgaatgaggataagcttactagagaaaatgtggcaagccatctccagaaatttagactatatcttaaaagaatcagttgcgtagcaaaccaacaagctaatatgatggcagctataggcagttcggattcttcttatttgcgaatgggttctttcaacggagttcgaaattaccatgcattgactggacctgggcagtttaacaacactggttttagatccatgccacttaatgggatgattggtagagtgaacactcctgctggtctgggtcagcattgcctgccatcttcaggatcaattaagttgggtcatggacaacatccaagcaactcgattcttgatcagggcttatttcctggaaaccgtaatggaagtatgtttcaaggaaatttggaacttgatcaacggcacagtaaaggtgctacctccgtgcgggacctctctgctggtatcaatggtacaccagtttatcccattcccggtggactttcagacgcaaaactgattgtcagtagatcaagtgatgctgttgggcttacagacgatttaatcttaagacatcctcgagattttgaaggtggaagagaatatgtaaaccagtcttcactttcagtggctcctttaaaatctgaattttctgccccctttctggatcatggtaggttgaatgacagctggtcaagcgctgctcagtcatctgctttccgatcaaattcttttccatcaagtaatacgagggacaatatacctgttgtaatgtcctcgcaactgcggaactgtcagtttgatgttccttcaataaattcagtctccagtcaattgcaggatccaagaacagaattgctgatccaaccttctgcaattagtagcactgctgagcagataattgatagtgatccaactcaggggtgggtgtggatggatcataagcaggattccccataccaccactcggatgctataagtagctccatgaactctttgatgcctgctaatattcccgtggcttttgaccagaatttggactcaaaaggcacaactttacaaagaaacatggacttcaattccattggacagtcaaattttcttgatcctttgcacataaaatttgatgaggttgaaagatcagtggaggcatcaatgaacttgaagccaggtgagtgcaatgacaaatcagctggaaaagagatgaggcgacatcaatgggaaggagacttcaacatgagaagtggaaagatccagaacgtagtgttctttgcgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009966 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048583 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

422

Amino Acids

46.32

Weight (kDa)

6.67

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25180 AT4G31920
fragaria_vesca	FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890 FvH4_2g40890
malus_domestica	MD08G1059000.v1.1 MD15G1037400.v1.1
prunus_persica	Prupe.1G391400_v2.0.a1 Prupe.1G391400_v2.0.a1
pyrus_communis	pycom08g04890 pycom15g03450 pycom15g03460
rosa_chinensis	RchiOBHm_Chr6g0299681
rosa_laevigata	RLG00000011397
rosa_multiflora	Rmu_co8516769.1_g000001 Rmu_sc0002895.1_g000008
rosa_roxburghii	Rroxscaffold_7G00168450
rosa_rugosa	Rorug06G0291500
rosa_samantha	Rh6AG402300 Rh6BG410800 Rh6CG416600 Rh6DG403700
rosa_wichuraiana	Rw6G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	233, 1024
AciI	CCGC	2 cut(s)	436, 775
AcsI	RAATTY	8 cut(s)	50, 391, 635, 715, 805, 1021, 1084, 1109
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	463
AfeI	AGCGCT	1 cut(s)	688
AfiI	CCNNNNNNNGG	8 cut(s)	233, 293, 435, 482, 652, 908, 955, 1024
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	9 cut(s)	157, 386, 578, 670, 801, 1066, 1124, 1153, 1222
AhdI	GACNNNNNGTC	1 cut(s)	679
AjnI	CCWGG	3 cut(s)	190, 358, 1156
AluBI	AGCT	6 cut(s)	16, 98, 113, 678, 972, 1181
AluI	AGCT	6 cut(s)	16, 98, 113, 678, 972, 1181
Alw26I	GTCTC	2 cut(s)	817, 1209
Ama87I	CYCGRG	1 cut(s)	567
Aor51HI	AGCGCT	1 cut(s)	688
ApeKI	GCWGC	2 cut(s)	110, 689
ApoI	RAATTY	8 cut(s)	50, 391, 635, 715, 805, 1021, 1084, 1109
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	188, 439
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	1172
AsuII	TTCGAA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	2 cut(s)	188, 439
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BamHI	GGATCC	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	122, 676
BccI	CCATC	5 cut(s)	48, 100, 295, 733, 916
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	3 cut(s)	192, 360, 1158
BclI	TGATCA	2 cut(s)	343, 403
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	817, 1209
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	556
BisI	GCNGC	2 cut(s)	111, 690
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	2 cut(s)	112, 691
Bme1390I	CCNGG	4 cut(s)	192, 360, 483, 1158
Bme18I	GGWCC	2 cut(s)	188, 439
BmeRI	GACNNNNNGTC	1 cut(s)	679
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	2 cut(s)	188, 439
BmiI	GGNNCC	3 cut(s)	440, 621, 831
BmrFI	CCNGG	4 cut(s)	192, 360, 483, 1158
BmsI	GCATC	4 cut(s)	517, 949, 978, 1148
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	2 cut(s)	29, 799
Bpu1102I	GCTNAGC	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	191, 1005
Bsc4I	CCNNNNNNNGG	8 cut(s)	233, 293, 435, 482, 652, 908, 955, 1024
Bse1I	ACTGG	5 cut(s)	190, 214, 467, 601, 816
Bse3DI	GCAATG	2 cut(s)	277, 1174
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	3 cut(s)	192, 360, 1158
BseDI	CCNNGG	2 cut(s)	191, 1005
BseGI	GGATG	5 cut(s)	243, 322, 562, 927, 964
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	8 cut(s)	233, 293, 435, 482, 652, 908, 955, 1024
BseMI	GCAATG	2 cut(s)	277, 1174
BseMII	CTCAG	3 cut(s)	707, 870, 920
BseNI	ACTGG	5 cut(s)	190, 214, 467, 601, 816
BseXI	GCAGC	2 cut(s)	122, 676
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	452, 755
BslI	CCNNNNNNNGG	8 cut(s)	233, 293, 435, 482, 652, 908, 955, 1024
BsmAI	GTCTC	2 cut(s)	817, 1209
BsmFI	GGGAC	2 cut(s)	452, 755
BsoBI	CYCGRG	1 cut(s)	567
Bsp119I	TTCGAA	1 cut(s)	166
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	2 cut(s)	436, 775
BspCNI	CTCAG	3 cut(s)	706, 871, 919
BspLI	GGNNCC	3 cut(s)	440, 621, 831
BspT104I	TTCGAA	1 cut(s)	166
BspTI	CTTAAG	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	277, 1174
BsrI	ACTGG	5 cut(s)	190, 214, 467, 601, 816
BssECI	CCNNGG	2 cut(s)	191, 1005
Bst2UI	CCWGG	3 cut(s)	192, 360, 1158
Bst4CI	ACNGT	4 cut(s)	368, 416, 782, 1080
Bst6I	CTCTTC	1 cut(s)	580
BstAFI	CTTAAG	1 cut(s)	556
BstAPI	GCANNNNNTGC	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	37, 284, 993
BstDEI	CTNAG	3 cut(s)	693, 879, 906
BstDSI	CCRYGG	1 cut(s)	1005
BstF5I	GGATG	5 cut(s)	243, 322, 562, 927, 964
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstMAI	GTCTC	2 cut(s)	817, 1209
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 684
BstNI	CCWGG	3 cut(s)	192, 360, 1158
BstSCI	CCNGG	4 cut(s)	190, 358, 481, 1156
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	122, 676
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	3 cut(s)	218, 829, 1239
BstYI	RGATCY	3 cut(s)	218, 829, 1239
BtgI	CCRYGG	1 cut(s)	1005
BtsCI	GGATG	5 cut(s)	243, 322, 562, 927, 964
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	4 cut(s)	207, 621, 873, 1137
Cac8I	GCNNGC	3 cut(s)	37, 284, 993
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	188, 439
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	7 cut(s)	176, 223, 314, 659, 976, 1057, 1225
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	693, 879, 906
DraI	TTTAAA	1 cut(s)	627
DriI	GACNNNNNGTC	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	580
Eam1105I	GACNNNNNGTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	188, 439
Eco47III	AGCGCT	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	3 cut(s)	190, 358, 1156
EcoT22I	ATGCAT	1 cut(s)	181
FaeI	CATG	7 cut(s)	179, 226, 317, 662, 979, 1060, 1228
FaqI	GGGAC	2 cut(s)	452, 755
FatI	CATG	7 cut(s)	175, 222, 313, 658, 975, 1056, 1224
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	2 cut(s)	343, 403
Fnu4HI	GCNGC	2 cut(s)	111, 690
FokI	GGATG	5 cut(s)	250, 309, 549, 934, 971
Fsp4HI	GCNGC	2 cut(s)	111, 690
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	2 cut(s)	111, 690
GsuI	CTGGAG	2 cut(s)	29, 799
HaeII	RGCGCY	1 cut(s)	690
HapII	CCGG	1 cut(s)	483
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	7 cut(s)	179, 226, 317, 662, 979, 1060, 1228
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	72, 128, 337, 938, 1028
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	1172
Hpy166II	GTNNAC	4 cut(s)	253, 464, 488, 598
Hpy188I	TCNGA	5 cut(s)	127, 496, 634, 710, 958
Hpy188III	TCNNGA	7 cut(s)	46, 294, 341, 569, 653, 1091, 1243
Hpy8I	GTNNAC	4 cut(s)	253, 464, 488, 598
HpyAV	CCTTC	4 cut(s)	572, 807, 867, 1205
HpyCH4III	ACNGT	4 cut(s)	368, 416, 782, 1080
HpyCH4IV	ACGT	1 cut(s)	1248
HpyCH4V	TGCA	5 cut(s)	179, 826, 863, 1102, 1167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 684
HpyF3I	CTNAG	3 cut(s)	693, 879, 906
HpySE526I	ACGT	1 cut(s)	1248
Hsp92II	CATG	7 cut(s)	179, 226, 317, 662, 979, 1060, 1228
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	2 cut(s)	343, 403
LmnI	GCTCC	2 cut(s)	625, 977
Lsp1109I	GCAGC	2 cut(s)	122, 676
LweI	GCATC	4 cut(s)	517, 949, 978, 1148
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	1248
MboII	GAAGA	4 cut(s)	123, 282, 597, 597
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	3 cut(s)	218, 829, 1239
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	877, 926
MnlI	CCTC	8 cut(s)	439, 452, 576, 732, 775, 1111, 1129, 1188
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	148
MseI	TTAA	7 cut(s)	66, 201, 231, 303, 551, 557, 626
MslI	CAYNNNNRTG	1 cut(s)	957
MspA1I	CMGCKG	2 cut(s)	678, 1181
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	4 cut(s)	192, 360, 483, 1158
MunI	CAATTG	1 cut(s)	821
MvaI	CCWGG	3 cut(s)	192, 360, 1158
MwoI	GCNNNNNNNGC	2 cut(s)	283, 684
NciI	CCSGG	1 cut(s)	483
NlaIII	CATG	7 cut(s)	179, 226, 317, 662, 979, 1060, 1228
NlaIV	GGNNCC	3 cut(s)	440, 621, 831
NsiI	ATGCAT	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	72, 128, 337, 938
PflMI	CCANNNNNTGG	2 cut(s)	233, 1024
PfoI	TCCNGGA	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	112, 691
PleI	GAGTC	1 cut(s)	1022
PpsI	GAGTC	1 cut(s)	1022
PpuMI	RGGWCCY	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	3 cut(s)	190, 358, 1156
PspGI	CCWGG	3 cut(s)	190, 358, 1156
PspN4I	GGNNCC	3 cut(s)	440, 621, 831
PspPI	GGNCC	2 cut(s)	188, 439
PspPPI	RGGWCCY	1 cut(s)	439
PsuI	RGATCY	3 cut(s)	218, 829, 1239
PvuII	CAGCTG	2 cut(s)	678, 1181
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	957
SaqAI	TTAA	7 cut(s)	66, 201, 231, 303, 551, 557, 626
SatI	GCNGC	2 cut(s)	111, 690
Sau96I	GGNCC	2 cut(s)	188, 439
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	4 cut(s)	192, 360, 483, 1158
SfaNI	GCATC	4 cut(s)	517, 949, 978, 1148
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	166
SinI	GGWCC	2 cut(s)	188, 439
SlaI	CTCGAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	2 cut(s)	556, 567
SmoI	CTYRAG	2 cut(s)	556, 567
SsiI	CCGC	2 cut(s)	436, 775
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	4 cut(s)	190, 358, 481, 1156
TaaI	ACNGT	4 cut(s)	368, 416, 782, 1080
TaiI	ACGT	1 cut(s)	1251
TaqI	TCGA	3 cut(s)	166, 335, 568
TfiI	GAWTC	4 cut(s)	72, 128, 337, 938
Tru1I	TTAA	7 cut(s)	66, 201, 231, 303, 551, 557, 626
Tru9I	TTAA	7 cut(s)	66, 201, 231, 303, 551, 557, 626
TscAI	CASTG	4 cut(s)	214, 621, 880, 1137
TseI	GCWGC	2 cut(s)	110, 689
TspDTI	ATGAA	3 cut(s)	17, 992, 1160
TspGWI	ACGGA	2 cut(s)	174, 421
TspRI	CASTG	4 cut(s)	214, 621, 880, 1137
Van91I	CCANNNNNTGG	2 cut(s)	233, 1024
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	2 cut(s)	188, 439
XapI	RAATTY	8 cut(s)	50, 391, 635, 715, 805, 1021, 1084, 1109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	182, 909
XhoI	CTCGAG	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	148
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.