Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009262

Physical Location & Seq

Genomic Coordinates Reverse (-)

3050829 .. 3052857

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAAGGAAAGGCAAGCTCTATGGTGGCTGCAGCCCTTGCTCCGAAACCAGGATGGGAGGTTCTTGATGCATGCTCGGCTCCTGGAAACAAAACTGTGCACCTTGCAGCTCTTATGAGAGGAGAGGGAAAAGTAATAGCATGTGAACTGAATGAAGACAGGGTTAAACGTTTAAAAGAGACTATCAGACTTTCTGGTGCTTCTAATATTAAGGTTGTGCATGGAGATTTCTTAGACTTAAACCCTGAAGATCCTCAATTTTCCAAGGTCCGGGCCATTCTTTTAGATCCTTCCTGCTCTGGATCTGGGACTGCTTCTGCAAGATTAGATCATTTGCTCCCATCTTCTGCTCCAGGTCAGGGTACCGATTTTGCCAGCACAGAAAGACTTAACAAGCTCGCTGCCTTTCAGAGAAAAGCTCTGGCTCATGCTTTATCTTTTCCGGAAGTGGAGAGAGTTGTTTACAGCACATGCTCTGTTAACCAAGTCGAAAACGAAGATGTCGTTAAATCTGTGCTACCACTTGCTGCATCCAATGGTTTCCAACTGGAAACCCCCTTCCCGAAATGGCACCGCCGTGGTCTCCCCGTTATCGAGGGCGCCGAATGCTTGATTAGGACCGATCCGAAGGAGGACAAAGAAGGCTTCTTCATCGCTCTGTTTTCCAGGAGCTCCAGCACCCAACAAGAGGCGCCTAATGGAACCGGCAGAGACGCCACCGAAGCCTCGAAGAGGCAGAGAAATTATGCAGTGCCTCATCTCAATCTGTTTAAAACGTGGACACATGCGCAGCGGATGTGGCGTAATAATTCTAGCCACACTCACAGTCAATGTCATTGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

282

Amino Acids

30.74

Weight (kDa)

8.61

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26180 AT5G26180 AT5G26180 AT5G26180 AT5G26180
fragaria_vesca	FvH4_2g31380 FvH4_2g31380
malus_domestica	MD15G1053900.v1.1
prunus_persica	Prupe.1G407400_v2.0.a1
pyrus_communis	pycom15g05080
rosa_chinensis	RchiOBHm_Chr6g0311441
rosa_laevigata	RLG00000010406
rosa_multiflora	Rmu_sc0006915.1_g000009 Rmu_sc0013619.1_g000002 Rmu_sc0015790.1_g000002
rosa_roxburghii	Rroxscaffold_7G00157610
rosa_rugosa	Rorug06G0389100
rosa_samantha	Rh6AG503400 Rh6BG514000 Rh6CG519800 Rh6DG506000
rosa_wichuraiana	Rw6G043840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	789
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	4 cut(s)	362, 570, 599, 691
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	2 cut(s)	574, 793
AclI	AACGTT	1 cut(s)	169
AclWI	GGATC	4 cut(s)	245, 281, 310, 617
AcuI	CTGAAG	1 cut(s)	267
AcyI	GRCGYC	3 cut(s)	600, 692, 714
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	5 cut(s)	50, 270, 359, 688, 732
AjnI	CCWGG	4 cut(s)	49, 82, 352, 665
AleI	CACNNNNGTG	1 cut(s)	576
AloI	GAACNNNNNNTCC	2 cut(s)	45, 77
AluBI	AGCT	5 cut(s)	18, 110, 397, 419, 672
AluI	AGCT	5 cut(s)	18, 110, 397, 419, 672
Alw21I	GWGCWC	2 cut(s)	102, 674
Alw26I	GTCTC	3 cut(s)	173, 587, 705
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	4 cut(s)	245, 281, 310, 617
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	1 cut(s)	273
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	6 cut(s)	29, 32, 107, 401, 527, 790
Asp718I	GGTACC	1 cut(s)	362
AspLEI	GCGC	3 cut(s)	602, 694, 790
AspS9I	GGNCC	3 cut(s)	268, 273, 618
AsuC2I	CCSGG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	268, 618
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	4 cut(s)	362, 570, 599, 691
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	102, 674
BbvI	GCAGC	6 cut(s)	16, 44, 119, 388, 514, 802
BccI	CCATC	2 cut(s)	48, 349
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	4 cut(s)	51, 84, 354, 667
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	3 cut(s)	173, 587, 705
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	2 cut(s)	603, 695
BisI	GCNGC	6 cut(s)	30, 33, 108, 402, 528, 791
BlsI	GCNGC	6 cut(s)	31, 34, 109, 403, 529, 792
Bme1390I	CCNGG	5 cut(s)	51, 84, 272, 354, 667
Bme18I	GGWCC	2 cut(s)	268, 618
BmgT120I	GGNCC	3 cut(s)	268, 273, 618
BmiI	GGNNCC	6 cut(s)	81, 364, 572, 601, 693, 703
BmrFI	CCNGG	5 cut(s)	51, 84, 272, 354, 667
BmsI	GCATC	2 cut(s)	58, 539
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	403, 435
BpmI	CTGGAG	2 cut(s)	336, 658
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	3 cut(s)	600, 692, 714
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	2 cut(s)	264, 577
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 270, 359, 688, 732
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	4 cut(s)	51, 84, 354, 667
BseDI	CCNNGG	2 cut(s)	264, 577
BseGI	GGATG	3 cut(s)	59, 530, 801
BseLI	CCNNNNNNNGG	5 cut(s)	50, 270, 359, 688, 732
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	6 cut(s)	16, 44, 119, 388, 514, 802
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	4 cut(s)	362, 570, 599, 691
BsiHKAI	GWGCWC	2 cut(s)	102, 674
BsiSI	CCGG	3 cut(s)	271, 443, 705
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	5 cut(s)	50, 270, 359, 688, 732
BsmAI	GTCTC	3 cut(s)	173, 587, 705
BsmBI	CGTCTC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	102, 674
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	250, 286, 302, 328, 622
BspACI	CCGC	2 cut(s)	574, 793
BspANI	GGCC	1 cut(s)	275
BspEI	TCCGGA	1 cut(s)	442
BspLI	GGNNCC	6 cut(s)	81, 364, 572, 601, 693, 703
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	4 cut(s)	245, 281, 310, 617
BspT107I	GGYRCC	4 cut(s)	362, 570, 599, 691
BspTNI	GGTCTC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	704
BsrI	ACTGG	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	264, 577
BssMI	GATC	5 cut(s)	250, 286, 302, 328, 622
BssNI	GRCGYC	3 cut(s)	600, 692, 714
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	4 cut(s)	51, 84, 354, 667
Bst4CI	ACNGT	2 cut(s)	97, 827
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	3 cut(s)	600, 692, 714
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	4 cut(s)	16, 73, 376, 399
BstDEI	CTNAG	1 cut(s)	232
BstDSI	CCRYGG	1 cut(s)	577
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	3 cut(s)	59, 530, 801
BstH2I	RGCGCY	2 cut(s)	603, 695
BstHHI	GCGC	3 cut(s)	602, 694, 790
BstKTI	GATC	5 cut(s)	253, 289, 305, 331, 625
BstMAI	GTCTC	3 cut(s)	173, 587, 705
BstMBI	GATC	5 cut(s)	250, 286, 302, 328, 622
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 77, 606, 722, 799
BstNI	CCWGG	4 cut(s)	51, 84, 354, 667
BstNSI	RCATGY	4 cut(s)	75, 144, 474, 788
BstSCI	CCNGG	5 cut(s)	49, 82, 270, 352, 665
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	6 cut(s)	16, 44, 119, 388, 514, 802
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	3 cut(s)	250, 286, 302
BstYI	RGATCY	3 cut(s)	250, 286, 302
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	577
BtgZI	GCGATG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	59, 530, 801
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	4 cut(s)	16, 73, 376, 399
CfoI	GCGC	3 cut(s)	602, 694, 790
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	268, 273, 618
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	6 cut(s)	72, 141, 221, 428, 471, 785
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	232
DinI	GGCGCC	2 cut(s)	601, 693
DpnI	GATC	5 cut(s)	252, 288, 304, 330, 624
DpnII	GATC	5 cut(s)	250, 286, 302, 328, 622
DraI	TTTAAA	2 cut(s)	174, 772
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Ecl136II	GAGCTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	2 cut(s)	268, 618
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoRII	CCWGG	4 cut(s)	49, 82, 352, 665
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	674
EgeI	GGCGCC	2 cut(s)	601, 693
EheI	GGCGCC	2 cut(s)	601, 693
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	705
FaeI	CATG	6 cut(s)	75, 144, 224, 431, 474, 788
FaiI	YATR	9 cut(s)	23, 73, 116, 142, 222, 429, 472, 747, 786
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	6 cut(s)	71, 140, 220, 427, 470, 784
Fnu4HI	GCNGC	6 cut(s)	30, 33, 108, 402, 528, 791
FokI	GGATG	3 cut(s)	66, 517, 808
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	6 cut(s)	30, 33, 108, 402, 528, 791
FspBI	CTAG	1 cut(s)	813
FspI	TGCGCA	1 cut(s)	789
GlaI	GCGC	3 cut(s)	601, 693, 789
GluI	GCNGC	6 cut(s)	30, 33, 108, 402, 528, 791
GsuI	CTGGAG	2 cut(s)	336, 658
HaeII	RGCGCY	2 cut(s)	603, 695
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	3 cut(s)	271, 443, 705
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	3 cut(s)	602, 694, 790
Hin1I	GRCGYC	3 cut(s)	600, 692, 714
Hin1II	CATG	6 cut(s)	75, 144, 224, 431, 474, 788
Hin6I	GCGC	3 cut(s)	600, 692, 788
HinP1I	GCGC	3 cut(s)	600, 692, 788
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	3 cut(s)	271, 443, 705
Hpy166II	GTNNAC	5 cut(s)	100, 146, 463, 481, 780
Hpy188I	TCNGA	4 cut(s)	45, 188, 411, 627
Hpy188III	TCNNGA	4 cut(s)	65, 300, 443, 562
Hpy8I	GTNNAC	5 cut(s)	100, 146, 463, 481, 780
HpyAV	CCTTC	4 cut(s)	300, 568, 622, 635
HpyCH4III	ACNGT	2 cut(s)	97, 827
HpyCH4IV	ACGT	2 cut(s)	169, 776
HpyCH4V	TGCA	9 cut(s)	4, 32, 71, 100, 107, 220, 320, 530, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 77, 606, 722, 799
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	2 cut(s)	169, 776
Hsp92I	GRCGYC	3 cut(s)	600, 692, 714
Hsp92II	CATG	6 cut(s)	75, 144, 224, 431, 474, 788
HspAI	GCGC	3 cut(s)	600, 692, 788
KasI	GGCGCC	2 cut(s)	599, 691
Kpn2I	TCCGGA	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	366
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	250, 286, 302, 328, 622
LmnI	GCTCC	6 cut(s)	46, 85, 342, 355, 669, 677
Lsp1109I	GCAGC	6 cut(s)	16, 44, 119, 388, 514, 802
LweI	GCATC	2 cut(s)	58, 539
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	2 cut(s)	169, 776
MalI	GATC	5 cut(s)	252, 288, 304, 330, 624
MboI	GATC	5 cut(s)	250, 286, 302, 328, 622
MboII	GAAGA	6 cut(s)	167, 260, 336, 509, 640, 742
MflI	RGATCY	3 cut(s)	250, 286, 302
MhlI	GDGCHC	2 cut(s)	102, 674
MluCI	AATT	3 cut(s)	257, 742, 808
Mly113I	GGCGCC	2 cut(s)	600, 692
MmeI	TCCRAC	1 cut(s)	568
Mph1103I	ATGCAT	1 cut(s)	73
MroI	TCCGGA	1 cut(s)	442
MseI	TTAA	8 cut(s)	165, 173, 210, 239, 390, 480, 507, 771
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	793
MspI	CCGG	3 cut(s)	271, 443, 705
MspR9I	CCNGG	5 cut(s)	51, 84, 272, 354, 667
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	4 cut(s)	51, 84, 354, 667
MwoI	GCNNNNNNNGC	5 cut(s)	38, 77, 606, 722, 799
NarI	GGCGCC	2 cut(s)	600, 692
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	5 cut(s)	250, 286, 302, 328, 622
NlaIII	CATG	6 cut(s)	75, 144, 224, 431, 474, 788
NlaIV	GGNNCC	6 cut(s)	81, 364, 572, 601, 693, 703
NmeAIII	GCCGAG	1 cut(s)	56
NsbI	TGCGCA	1 cut(s)	789
NsiI	ATGCAT	1 cut(s)	73
NspI	RCATGY	4 cut(s)	75, 144, 474, 788
OliI	CACNNNNGTG	1 cut(s)	576
PaeI	GCATGC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	2 cut(s)	501, 600
PctI	GAATGC	1 cut(s)	611
PfoI	TCCNGGA	2 cut(s)	82, 665
PkrI	GCNGC	6 cut(s)	31, 34, 109, 403, 529, 792
PluTI	GGCGCC	2 cut(s)	603, 695
Psp124BI	GAGCTC	1 cut(s)	674
Psp1406I	AACGTT	1 cut(s)	169
Psp6I	CCWGG	4 cut(s)	49, 82, 352, 665
PspGI	CCWGG	4 cut(s)	49, 82, 352, 665
PspN4I	GGNNCC	6 cut(s)	81, 364, 572, 601, 693, 703
PspPI	GGNCC	3 cut(s)	268, 273, 618
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	3 cut(s)	250, 286, 302
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	576
SacI	GAGCTC	1 cut(s)	674
SaqAI	TTAA	8 cut(s)	165, 173, 210, 239, 390, 480, 507, 771
SatI	GCNGC	6 cut(s)	30, 33, 108, 402, 528, 791
Sau3AI	GATC	5 cut(s)	250, 286, 302, 328, 622
Sau96I	GGNCC	3 cut(s)	268, 273, 618
ScrFI	CCNGG	5 cut(s)	51, 84, 272, 354, 667
SduI	GDGCHC	2 cut(s)	102, 674
SfaNI	GCATC	2 cut(s)	58, 539
SfcI	CTRYAG	1 cut(s)	30
SfoI	GGCGCC	2 cut(s)	601, 693
SinI	GGWCC	2 cut(s)	268, 618
SmiMI	CAYNNNNRTG	1 cut(s)	576
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	3 cut(s)	257, 742, 808
SsiI	CCGC	2 cut(s)	574, 793
SspDI	GGCGCC	2 cut(s)	599, 691
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	813
SstI	GAGCTC	1 cut(s)	674
StyD4I	CCNGG	5 cut(s)	49, 82, 270, 352, 665
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	97, 827
TaiI	ACGT	2 cut(s)	172, 779
TaqI	TCGA	3 cut(s)	489, 594, 728
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	3 cut(s)	257, 742, 808
Tru1I	TTAA	8 cut(s)	165, 173, 210, 239, 390, 480, 507, 771
Tru9I	TTAA	8 cut(s)	165, 173, 210, 239, 390, 480, 507, 771
TscAI	CASTG	1 cut(s)	756
TseI	GCWGC	6 cut(s)	29, 32, 107, 401, 527, 790
TspDTI	ATGAA	2 cut(s)	168, 640
TspRI	CASTG	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	268, 618
XagI	CCTNNNNNAGG	1 cut(s)	730
XceI	RCATGY	4 cut(s)	75, 144, 474, 788
XspI	CTAG	1 cut(s)	813
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.