Rmu_sc0013619.1_g000002
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013619.1
Physical Location & Seq
Forward (+)
1304 .. 4496
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013619.1_g000002.1.cds

Sequence Viewer

Length: 1476 bp
atggcgcgtacgagaattgcagcgaccccgccgtcgacggcggccgagaaatcagaaaaccggcgccgtttaaggatggagaggtcggcgctgttcgctaggagagaggcggcgaaggttctgaagctggttctccaaggcgactcccgccgccggtccgtcggctctatcaagtcgctcgtttacagtccctcggtgagaaacaagaagggaactttcgctctggtctgcgaaaccctaaagcatcttaagataatcaaacaggtgttgaatgctgcagacgttctgaatagcaagtggaggaagcaagacgagttggtttacattgtcacatatgatgttcttttcggccaggtgacttcgtcaactggtgatgcggagagatttctattgcttcggaaaaaggctctgcaggcagctctagatcgccttttagtgaagaaaaaagtgaagagcgttgaagagttgatagctcgtgatcaaactcctgagatttcaacacctcggtatgttcgtgttaatactctgaaaattgatgtcaatacggccatgcttgaattacagaaacaatacaaggttcaacaggatgatctggttcctgacttgttgattcttccacctggtagtgacttgcatgaccatcctctaatagtcaatggaagtgtcttcatgcaaggaaaggcaagctctatggttgcagcagccctcgcaccgaaaccagggtgggaggttcttgatgcatgctcagctccaggaaacaaaaccgtccacctagcagctctaatgggaggtgaaggaaaaatcatagcatgtgagctgaatgaagagagggttaaacgattaaaagagacaatcagactctctggtgcttctaatattaaggttctgcatggagatttcttacagttgaaccctgaggatcccgcatattccaaggtccacgccattcttttggatccttcctgctctggatctgggacagcttctgcaagattagatcatttgctcccttcttctgctccgggtcacactgctgacttcacagagacagaaagactgaacaagcttgcggcttttcagcaaaaagctctggctcatgctttatctttcccagaagtggaaagaattgtttacagcacatgctctgtcaaccaaattgaaaacgaagatgttgtcagttctgttctacctcttgctgaatcttatggttttgaacttgaaactccgtttcccaaatggcagcgccgtggtcttccagttttcaagggtgctgaacgactgcttcgaactgatcccattgaagacaaagaagggttcttcattgctttgtttgtcagaaaaggctcctatcaatcagaggaacctgatttgaccaacgaaaaaaacacccacagaaatccacatgccagccaaattgtagctgttgtggatgaaaacagaacgtcactcccctgtttcagttttgtcttcccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

54.51

Weight (kDa)

9.15

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 35
AccII CGCG 1 cut(s) 7
AciI CCGC 8 cut(s) 29, 41, 110, 148, 151, 377, 924, 1070
AclWI GGATC 6 cut(s) 914, 927, 950, 963, 979, 1286
AcoI YGGCCR 3 cut(s) 42, 349, 546
AcuI CTGAAG 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 3 cut(s) 153, 719, 1117
AflII CTTAAG 1 cut(s) 248
AjnI CCWGG 4 cut(s) 351, 619, 718, 751
Alw26I GTCTC 2 cut(s) 842, 1040
AlwI GGATC 6 cut(s) 914, 927, 950, 963, 979, 1286
AlwNI CAGNNNCTG 1 cut(s) 986
AoxI GGCC 3 cut(s) 42, 349, 546
ApeKI GCWGC 7 cut(s) 20, 275, 416, 698, 701, 776, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 1158, 1190
AspLEI GCGC 4 cut(s) 7, 66, 91, 1245
AspS9I GGNCC 2 cut(s) 156, 937
AsuC2I CCSGG 1 cut(s) 1023
AsuHPI GGTGA 4 cut(s) 208, 367, 383, 803
AsuII TTCGAA 1 cut(s) 1285
AvaII GGWCC 2 cut(s) 156, 937
AxyI CCTNAGG 1 cut(s) 915
BamHI GGATCC 2 cut(s) 919, 955
BanI GGYRCC 1 cut(s) 63
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 4 cut(s) 658, 1244, 1308, 1459
BbvI GCAGC 7 cut(s) 32, 262, 428, 710, 713, 788, 1252
BccI CCATC 2 cut(s) 70, 648
BceAI ACGGC 5 cut(s) 16, 51, 54, 561, 1230
BciT130I CCWGG 4 cut(s) 353, 621, 720, 753
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 1023
BcoDI GTCTC 2 cut(s) 842, 1040
BfaI CTAG 3 cut(s) 99, 422, 773
BfmI CTRYAG 2 cut(s) 276, 410
BfoI RGCGCY 3 cut(s) 67, 92, 1246
BfrI CTTAAG 1 cut(s) 248
BlpI GCTNAGC 1 cut(s) 745
Bme1390I CCNGG 5 cut(s) 353, 621, 720, 753, 1023
Bme18I GGWCC 2 cut(s) 156, 937
BmgT120I GGNCC 2 cut(s) 156, 937
BmiI GGNNCC 6 cut(s) 65, 597, 921, 957, 1345, 1362
BmrFI CCNGG 5 cut(s) 353, 621, 720, 753, 1023
BmsI GCATC 3 cut(s) 253, 364, 727
BpiI GAAGAC 4 cut(s) 658, 1244, 1308, 1459
BpmI CTGGAG 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 745
Bpu14I TTCGAA 1 cut(s) 1285
BpuMI CCSGG 1 cut(s) 1023
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 6 cut(s) 136, 192, 503, 719, 933, 1246
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 719, 1117
Bse118I RCCGGY 2 cut(s) 60, 153
Bse1I ACTGG 2 cut(s) 373, 1256
Bse21I CCTNAGG 1 cut(s) 915
Bse3DI GCAATG 1 cut(s) 1320
BseBI CCWGG 4 cut(s) 353, 621, 720, 753
BseDI CCNNGG 6 cut(s) 136, 192, 503, 719, 933, 1246
BseGI GGATG 4 cut(s) 81, 592, 640, 1435
BseLI CCNNNNNNNGG 3 cut(s) 153, 719, 1117
BseMI GCAATG 1 cut(s) 1320
BseMII CTCAG 3 cut(s) 480, 759, 906
BseNI ACTGG 2 cut(s) 373, 1256
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 7 cut(s) 32, 262, 428, 710, 713, 788, 1252
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 3 cut(s) 44, 351, 548
BshNI GGYRCC 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 3 cut(s) 61, 154, 1022
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 174, 991
BslI CCNNNNNNNGG 3 cut(s) 153, 719, 1117
BsmAI GTCTC 2 cut(s) 842, 1040
BsmFI GGGAC 2 cut(s) 174, 991
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 3 cut(s) 44, 351, 548
Bsp119I TTCGAA 1 cut(s) 1285
Bsp143I GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
Bsp1720I GCTNAGC 1 cut(s) 745
BspACI CCGC 8 cut(s) 29, 41, 110, 148, 151, 377, 924, 1070
BspANI GGCC 3 cut(s) 44, 351, 548
BspCNI CTCAG 3 cut(s) 481, 758, 907
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 6 cut(s) 65, 597, 921, 957, 1345, 1362
BspMAI CTGCAG 2 cut(s) 280, 414
BspPI GGATC 6 cut(s) 914, 927, 950, 963, 979, 1286
BspQI GCTCTTC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 1285
BspT107I GGYRCC 1 cut(s) 63
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 1320
BsrFI RCCGGY 2 cut(s) 60, 153
BsrI ACTGG 2 cut(s) 373, 1256
BssAI RCCGGY 2 cut(s) 60, 153
BssECI CCNNGG 6 cut(s) 136, 192, 503, 719, 933, 1246
BssMI GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
BssNI GRCGYC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 136, 933
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 4 cut(s) 353, 621, 720, 753
Bst4CI ACNGT 3 cut(s) 188, 766, 906
Bst6I CTCTTC 3 cut(s) 446, 456, 819
BstACI GRCGYC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 1285
BstC8I GCNNGC 5 cut(s) 414, 685, 742, 1068, 1408
BstDEI CTNAG 3 cut(s) 489, 745, 915
BstDSI CCRYGG 1 cut(s) 1246
BstF5I GGATG 4 cut(s) 81, 592, 640, 1435
BstFNI CGCG 1 cut(s) 7
BstH2I RGCGCY 3 cut(s) 67, 92, 1246
BstHHI GCGC 4 cut(s) 7, 66, 91, 1245
BstKTI GATC 8 cut(s) 427, 481, 592, 922, 958, 974, 1000, 1294
BstMAI GTCTC 2 cut(s) 842, 1040
BstMBI GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 5 cut(s) 95, 147, 413, 707, 746
BstNI CCWGG 4 cut(s) 353, 621, 720, 753
BstNSI RCATGY 4 cut(s) 744, 813, 1143, 1406
BstSCI CCNGG 5 cut(s) 351, 619, 718, 751, 1021
BstSFI CTRYAG 2 cut(s) 276, 410
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 7 cut(s) 32, 262, 428, 710, 713, 788, 1252
BstV2I GAAGAC 4 cut(s) 658, 1244, 1308, 1459
BstX2I RGATCY 3 cut(s) 919, 955, 971
BstXI CCANNNNNNTGG 1 cut(s) 952
BstYI RGATCY 3 cut(s) 919, 955, 971
BstZI CGGCCG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 3 cut(s) 44, 351, 548
BtgI CCRYGG 1 cut(s) 1246
BtsCI GGATG 4 cut(s) 81, 592, 640, 1435
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 1 cut(s) 1029
Cac8I GCNNGC 5 cut(s) 414, 685, 742, 1068, 1408
CaiI CAGNNNCTG 1 cut(s) 986
CfoI GCGC 4 cut(s) 7, 66, 91, 1245
Cfr10I RCCGGY 2 cut(s) 60, 153
Cfr13I GGNCC 2 cut(s) 156, 937
CpoI CGGWCCG 1 cut(s) 156
CsiI ACCWGGT 1 cut(s) 619
Csp6I GTAC 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 156
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 3 cut(s) 489, 745, 915
DinI GGCGCC 1 cut(s) 65
DpnI GATC 8 cut(s) 426, 480, 591, 921, 957, 973, 999, 1293
DpnII GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 3 cut(s) 42, 349, 546
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 3 cut(s) 446, 456, 819
EarI CTCTTC 3 cut(s) 446, 456, 819
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 136, 933
Eco47I GGWCC 2 cut(s) 156, 937
Eco52I CGGCCG 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 915
EcoRII CCWGG 4 cut(s) 351, 619, 718, 751
EcoT14I CCWWGG 2 cut(s) 136, 933
EcoT22I ATGCAT 1 cut(s) 742
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 2 cut(s) 136, 933
FaqI GGGAC 2 cut(s) 174, 991
FauI CCCGC 3 cut(s) 36, 155, 931
FauNDI CATATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 35
FokI GGATG 4 cut(s) 88, 599, 627, 1442
FspBI CTAG 3 cut(s) 99, 422, 773
GlaI GCGC 4 cut(s) 6, 65, 90, 1244
GsuI CTGGAG 1 cut(s) 735
HaeII RGCGCY 3 cut(s) 67, 92, 1246
HaeIII GGCC 3 cut(s) 44, 351, 548
HapII CCGG 3 cut(s) 61, 154, 1022
HhaI GCGC 4 cut(s) 7, 66, 91, 1245
Hin1I GRCGYC 1 cut(s) 64
Hin6I GCGC 4 cut(s) 5, 64, 89, 1243
HinP1I GCGC 4 cut(s) 5, 64, 89, 1243
HincII GTYRAC 3 cut(s) 36, 366, 1150
HindII GTYRAC 3 cut(s) 36, 366, 1150
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 4 cut(s) 143, 610, 858, 1199
HpaII CCGG 3 cut(s) 61, 154, 1022
HphI GGTGA 4 cut(s) 208, 367, 383, 803
Hpy166II GTNNAC 8 cut(s) 36, 184, 322, 366, 769, 940, 1132, 1150
Hpy188I TCNGA 8 cut(s) 55, 123, 288, 399, 528, 857, 1337, 1357
Hpy188III TCNNGA 6 cut(s) 422, 476, 488, 599, 734, 969
Hpy8I GTNNAC 8 cut(s) 36, 184, 322, 366, 769, 940, 1132, 1150
Hpy99I CGWCG 3 cut(s) 37, 40, 164
HpyAV CCTTC 6 cut(s) 109, 202, 788, 969, 1020, 1304
HpyCH4III ACNGT 3 cut(s) 188, 766, 906
HpyCH4IV ACGT 2 cut(s) 282, 1442
HpyCH4V TGCA 9 cut(s) 20, 278, 412, 634, 673, 698, 740, 889, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 147, 413, 707, 746
HpyF3I CTNAG 3 cut(s) 489, 745, 915
HpySE526I ACGT 2 cut(s) 282, 1442
Hsp92I GRCGYC 1 cut(s) 64
HspAI GCGC 4 cut(s) 5, 64, 89, 1243
KasI GGCGCC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 4 cut(s) 754, 1011, 1024, 1349
Lsp1109I GCAGC 7 cut(s) 32, 262, 428, 710, 713, 788, 1252
LweI GCATC 3 cut(s) 253, 364, 727
MabI ACCWGGT 1 cut(s) 619
MaeI CTAG 3 cut(s) 99, 422, 773
MaeII ACGT 2 cut(s) 282, 1442
MaeIII GTNAC 5 cut(s) 328, 355, 626, 1025, 1443
MalI GATC 8 cut(s) 426, 480, 591, 921, 957, 973, 999, 1293
MboI GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
MflI RGATCY 3 cut(s) 919, 955, 971
MluCI AATT 6 cut(s) 15, 531, 557, 1125, 1155, 1413
Mly113I GGCGCC 1 cut(s) 64
MlyI GAGTC 2 cut(s) 137, 852
Mph1103I ATGCAT 1 cut(s) 742
MseI TTAA 6 cut(s) 71, 249, 519, 834, 842, 879
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 3 cut(s) 61, 154, 1022
MspR9I CCNGG 5 cut(s) 353, 621, 720, 753, 1023
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 4 cut(s) 353, 621, 720, 753
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 5 cut(s) 95, 147, 413, 707, 746
NarI GGCGCC 1 cut(s) 64
NciI CCSGG 1 cut(s) 1023
NdeI CATATG 1 cut(s) 334
NdeII GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
NlaIV GGNNCC 6 cut(s) 65, 597, 921, 957, 1345, 1362
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 5 cut(s) 328, 355, 626, 1025, 1443
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 4 cut(s) 744, 813, 1143, 1406
NspV TTCGAA 1 cut(s) 1285
PaeI GCATGC 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 511, 1282
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 610, 1199
Pfl23II CGTACG 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 751
PleI GAGTC 2 cut(s) 137, 852
PluTI GGCGCC 1 cut(s) 67
PpsI GAGTC 2 cut(s) 137, 852
Psp6I CCWGG 4 cut(s) 351, 619, 718, 751
PspGI CCWGG 4 cut(s) 351, 619, 718, 751
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 6 cut(s) 65, 597, 921, 957, 1345, 1362
PspPI GGNCC 2 cut(s) 156, 937
PstI CTGCAG 2 cut(s) 280, 414
PstNI CAGNNNCTG 1 cut(s) 986
PsuI RGATCY 3 cut(s) 919, 955, 971
PsyI GACNNNGTC 1 cut(s) 361
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
Rsr2I CGGWCCG 1 cut(s) 156
RsrII CGGWCCG 1 cut(s) 156
SalI GTCGAC 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 6 cut(s) 71, 249, 519, 834, 842, 879
Sau3AI GATC 8 cut(s) 424, 478, 589, 919, 955, 971, 997, 1291
Sau96I GGNCC 2 cut(s) 156, 937
SchI GAGTC 2 cut(s) 137, 852
ScrFI CCNGG 5 cut(s) 353, 621, 720, 753, 1023
SexAI ACCWGGT 1 cut(s) 619
SfaNI GCATC 3 cut(s) 253, 364, 727
SfcI CTRYAG 2 cut(s) 276, 410
SfoI GGCGCC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 1285
SgrDI CGTCGACG 1 cut(s) 34
SinI GGWCC 2 cut(s) 156, 937
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 744
Sse9I AATT 6 cut(s) 15, 531, 557, 1125, 1155, 1413
SsiI CCGC 8 cut(s) 29, 41, 110, 148, 151, 377, 924, 1070
SspDI GGCGCC 1 cut(s) 63
SspI AATATT 1 cut(s) 877
SspMI CTAG 3 cut(s) 99, 422, 773
StyD4I CCNGG 5 cut(s) 351, 619, 718, 751, 1021
StyI CCWWGG 2 cut(s) 136, 933
TaaI ACNGT 3 cut(s) 188, 766, 906
TaiI ACGT 2 cut(s) 285, 1445
TaqI TCGA 2 cut(s) 35, 1285
TasI AATT 6 cut(s) 15, 531, 557, 1125, 1155, 1413
TauI GCSGC 4 cut(s) 44, 113, 153, 1073
TfiI GAWTC 2 cut(s) 610, 1199
Tru1I TTAA 6 cut(s) 71, 249, 519, 834, 842, 879
Tru9I TTAA 6 cut(s) 71, 249, 519, 834, 842, 879
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 5 cut(s) 328, 355, 626, 1025, 1443
TseI GCWGC 7 cut(s) 20, 275, 416, 698, 701, 776, 1240
Tsp45I GTSAC 5 cut(s) 328, 355, 626, 1025, 1443
TspDTI ATGAA 4 cut(s) 658, 837, 1309, 1446
TspGWI ACGGA 2 cut(s) 148, 1215
TspRI CASTG 1 cut(s) 1036
Tth111I GACNNNGTC 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 156, 937
XbaI TCTAGA 1 cut(s) 421
XceI RCATGY 4 cut(s) 744, 813, 1143, 1406
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 3 cut(s) 99, 422, 773
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.