Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G26180 AT5G26180 AT5G26180 AT5G26180 AT5G26180 |
| fragaria_vesca | FvH4_2g31380 FvH4_2g31380 |
| malus_domestica | MD15G1053900.v1.1 |
| prunus_persica | Prupe.1G407400_v2.0.a1 |
| pyrus_communis | pycom15g05080 |
| rosa_chinensis | RchiOBHm_Chr6g0311441 |
| rosa_laevigata | RLG00000010406 |
| rosa_multiflora | Rmu_sc0006915.1_g000009 Rmu_sc0013619.1_g000002 Rmu_sc0015790.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00157610 |
| rosa_rugosa | Rorug06G0389100 |
| rosa_samantha | Rh6AG503400 Rh6BG514000 Rh6CG519800 Rh6DG506000 |
| rosa_wichuraiana | Rw6G043840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 31 |
| AccB1I | GGYRCC | 2 cut(s) | 63, 213 |
| AccI | GTMKAC | 1 cut(s) | 35 |
| AccII | CGCG | 1 cut(s) | 7 |
| AclWI | GGATC | 6 cut(s) | 1064, 1077, 1100, 1113, 1129, 1436 |
| AcoI | YGGCCR | 2 cut(s) | 42, 499 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AcyI | GRCGYC | 2 cut(s) | 64, 214 |
| AfaI | GTAC | 1 cut(s) | 10 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 303, 869, 1267 |
| AflII | CTTAAG | 1 cut(s) | 398 |
| AjnI | CCWGG | 4 cut(s) | 501, 769, 868, 901 |
| Alw26I | GTCTC | 2 cut(s) | 992, 1190 |
| AlwI | GGATC | 6 cut(s) | 1064, 1077, 1100, 1113, 1129, 1436 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1136 |
| AoxI | GGCC | 3 cut(s) | 42, 499, 696 |
| ApeKI | GCWGC | 8 cut(s) | 20, 161, 425, 566, 848, 851, 926, 1390 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1308, 1340 |
| AspLEI | GCGC | 6 cut(s) | 7, 66, 91, 216, 241, 1395 |
| AspS9I | GGNCC | 3 cut(s) | 306, 697, 1087 |
| AsuC2I | CCSGG | 1 cut(s) | 1173 |
| AsuHPI | GGTGA | 4 cut(s) | 358, 517, 533, 953 |
| AsuII | TTCGAA | 1 cut(s) | 1435 |
| AvaII | GGWCC | 2 cut(s) | 306, 1087 |
| AxyI | CCTNAGG | 1 cut(s) | 1065 |
| BamHI | GGATCC | 2 cut(s) | 1069, 1105 |
| BanI | GGYRCC | 2 cut(s) | 63, 213 |
| BauI | CACGAG | 1 cut(s) | 624 |
| BbsI | GAAGAC | 4 cut(s) | 808, 1394, 1458, 1609 |
| BbvI | GCAGC | 8 cut(s) | 32, 148, 412, 578, 860, 863, 938, 1402 |
| BccI | CCATC | 3 cut(s) | 70, 220, 798 |
| BceAI | ACGGC | 7 cut(s) | 16, 51, 54, 138, 201, 711, 1380 |
| BciT130I | CCWGG | 4 cut(s) | 503, 771, 870, 903 |
| BclI | TGATCA | 1 cut(s) | 628 |
| BcnI | CCSGG | 1 cut(s) | 1173 |
| BcoDI | GTCTC | 2 cut(s) | 992, 1190 |
| BfaI | CTAG | 4 cut(s) | 99, 249, 572, 923 |
| BfmI | CTRYAG | 2 cut(s) | 426, 560 |
| BfoI | RGCGCY | 5 cut(s) | 67, 92, 217, 242, 1396 |
| BfrI | CTTAAG | 1 cut(s) | 398 |
| BlpI | GCTNAGC | 1 cut(s) | 895 |
| Bme1390I | CCNGG | 5 cut(s) | 503, 771, 870, 903, 1173 |
| Bme18I | GGWCC | 2 cut(s) | 306, 1087 |
| BmgT120I | GGNCC | 3 cut(s) | 306, 697, 1087 |
| BmiI | GGNNCC | 7 cut(s) | 65, 215, 747, 1071, 1107, 1495, 1512 |
| BmrFI | CCNGG | 5 cut(s) | 503, 771, 870, 903, 1173 |
| BmsI | GCATC | 3 cut(s) | 403, 514, 877 |
| BpiI | GAAGAC | 4 cut(s) | 808, 1394, 1458, 1609 |
| BpmI | CTGGAG | 1 cut(s) | 885 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 895 |
| Bpu14I | TTCGAA | 1 cut(s) | 1435 |
| BpuMI | CCSGG | 1 cut(s) | 1173 |
| BsaHI | GRCGYC | 2 cut(s) | 64, 214 |
| BsaJI | CCNNGG | 7 cut(s) | 136, 286, 342, 653, 869, 1083, 1396 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 303, 869, 1267 |
| Bse118I | RCCGGY | 3 cut(s) | 60, 210, 303 |
| Bse1I | ACTGG | 2 cut(s) | 523, 1406 |
| Bse21I | CCTNAGG | 1 cut(s) | 1065 |
| Bse3DI | GCAATG | 1 cut(s) | 1470 |
| BseBI | CCWGG | 4 cut(s) | 503, 771, 870, 903 |
| BseDI | CCNNGG | 7 cut(s) | 136, 286, 342, 653, 869, 1083, 1396 |
| BseGI | GGATG | 5 cut(s) | 81, 231, 742, 790, 1585 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 303, 869, 1267 |
| BseMI | GCAATG | 1 cut(s) | 1470 |
| BseMII | CTCAG | 3 cut(s) | 630, 909, 1056 |
| BseNI | ACTGG | 2 cut(s) | 523, 1406 |
| BseX3I | CGGCCG | 1 cut(s) | 42 |
| BseXI | GCAGC | 8 cut(s) | 32, 148, 412, 578, 860, 863, 938, 1402 |
| Bsh1236I | CGCG | 1 cut(s) | 7 |
| Bsh1285I | CGRYCG | 2 cut(s) | 45, 195 |
| BshFI | GGCC | 3 cut(s) | 44, 501, 698 |
| BshNI | GGYRCC | 2 cut(s) | 63, 213 |
| BsiEI | CGRYCG | 2 cut(s) | 45, 195 |
| BsiSI | CCGG | 4 cut(s) | 61, 211, 304, 1172 |
| BsiWI | CGTACG | 1 cut(s) | 8 |
| BslFI | GGGAC | 2 cut(s) | 324, 1141 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 303, 869, 1267 |
| BsmAI | GTCTC | 2 cut(s) | 992, 1190 |
| BsmFI | GGGAC | 2 cut(s) | 324, 1141 |
| BsmI | GAATGC | 1 cut(s) | 427 |
| BsnI | GGCC | 3 cut(s) | 44, 501, 698 |
| Bsp119I | TTCGAA | 1 cut(s) | 1435 |
| Bsp143I | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 895 |
| BspANI | GGCC | 3 cut(s) | 44, 501, 698 |
| BspCNI | CTCAG | 3 cut(s) | 631, 908, 1057 |
| BspFNI | CGCG | 1 cut(s) | 7 |
| BspLI | GGNNCC | 7 cut(s) | 65, 215, 747, 1071, 1107, 1495, 1512 |
| BspMAI | CTGCAG | 2 cut(s) | 430, 564 |
| BspPI | GGATC | 6 cut(s) | 1064, 1077, 1100, 1113, 1129, 1436 |
| BspQI | GCTCTTC | 1 cut(s) | 596 |
| BspT104I | TTCGAA | 1 cut(s) | 1435 |
| BspT107I | GGYRCC | 2 cut(s) | 63, 213 |
| BspTI | CTTAAG | 1 cut(s) | 398 |
| BsrDI | GCAATG | 1 cut(s) | 1470 |
| BsrFI | RCCGGY | 3 cut(s) | 60, 210, 303 |
| BsrI | ACTGG | 2 cut(s) | 523, 1406 |
| BssAI | RCCGGY | 3 cut(s) | 60, 210, 303 |
| BssECI | CCNNGG | 7 cut(s) | 136, 286, 342, 653, 869, 1083, 1396 |
| BssMI | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| BssNI | GRCGYC | 2 cut(s) | 64, 214 |
| BssSI | CACGAG | 1 cut(s) | 624 |
| BssT1I | CCWWGG | 3 cut(s) | 136, 286, 1083 |
| Bst2BI | CACGAG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 4 cut(s) | 503, 771, 870, 903 |
| Bst4CI | ACNGT | 3 cut(s) | 338, 916, 1056 |
| Bst6I | CTCTTC | 3 cut(s) | 596, 606, 969 |
| BstACI | GRCGYC | 2 cut(s) | 64, 214 |
| BstAFI | CTTAAG | 1 cut(s) | 398 |
| BstBI | TTCGAA | 1 cut(s) | 1435 |
| BstC8I | GCNNGC | 5 cut(s) | 564, 835, 892, 1218, 1558 |
| BstDEI | CTNAG | 3 cut(s) | 639, 895, 1065 |
| BstDSI | CCRYGG | 1 cut(s) | 1396 |
| BstF5I | GGATG | 5 cut(s) | 81, 231, 742, 790, 1585 |
| BstFNI | CGCG | 1 cut(s) | 7 |
| BstH2I | RGCGCY | 5 cut(s) | 67, 92, 217, 242, 1396 |
| BstHHI | GCGC | 6 cut(s) | 7, 66, 91, 216, 241, 1395 |
| BstKTI | GATC | 8 cut(s) | 577, 631, 742, 1072, 1108, 1124, 1150, 1444 |
| BstMAI | GTCTC | 2 cut(s) | 992, 1190 |
| BstMBI | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| BstMCI | CGRYCG | 2 cut(s) | 45, 195 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 95, 147, 245, 297, 563, 857, 896 |
| BstNI | CCWGG | 4 cut(s) | 503, 771, 870, 903 |
| BstNSI | RCATGY | 4 cut(s) | 894, 963, 1293, 1556 |
| BstSCI | CCNGG | 5 cut(s) | 501, 769, 868, 901, 1171 |
| BstSFI | CTRYAG | 2 cut(s) | 426, 560 |
| BstUI | CGCG | 1 cut(s) | 7 |
| BstV1I | GCAGC | 8 cut(s) | 32, 148, 412, 578, 860, 863, 938, 1402 |
| BstV2I | GAAGAC | 4 cut(s) | 808, 1394, 1458, 1609 |
| BstX2I | RGATCY | 3 cut(s) | 1069, 1105, 1121 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1102 |
| BstYI | RGATCY | 3 cut(s) | 1069, 1105, 1121 |
| BstZI | CGGCCG | 1 cut(s) | 42 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1065 |
| BsuRI | GGCC | 3 cut(s) | 44, 501, 698 |
| BtgI | CCRYGG | 1 cut(s) | 1396 |
| BtsCI | GGATG | 5 cut(s) | 81, 231, 742, 790, 1585 |
| BtsI | GCAGTG | 1 cut(s) | 1179 |
| BtsIMutI | CAGTG | 1 cut(s) | 1179 |
| Cac8I | GCNNGC | 5 cut(s) | 564, 835, 892, 1218, 1558 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1136 |
| CfoI | GCGC | 6 cut(s) | 7, 66, 91, 216, 241, 1395 |
| Cfr10I | RCCGGY | 3 cut(s) | 60, 210, 303 |
| Cfr13I | GGNCC | 3 cut(s) | 306, 697, 1087 |
| CpoI | CGGWCCG | 1 cut(s) | 306 |
| CsiI | ACCWGGT | 1 cut(s) | 769 |
| Csp6I | GTAC | 1 cut(s) | 9 |
| CspI | CGGWCCG | 1 cut(s) | 306 |
| CviAII | CATG | 9 cut(s) | 785, 820, 891, 960, 1040, 1247, 1290, 1553, 1623 |
| CviQI | GTAC | 1 cut(s) | 9 |
| DdeI | CTNAG | 3 cut(s) | 639, 895, 1065 |
| DinI | GGCGCC | 2 cut(s) | 65, 215 |
| DpnI | GATC | 8 cut(s) | 576, 630, 741, 1071, 1107, 1123, 1149, 1443 |
| DpnII | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 31 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 31 |
| EaeI | YGGCCR | 2 cut(s) | 42, 499 |
| EagI | CGGCCG | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 3 cut(s) | 596, 606, 969 |
| EarI | CTCTTC | 3 cut(s) | 596, 606, 969 |
| EclXI | CGGCCG | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 3 cut(s) | 136, 286, 1083 |
| Eco47I | GGWCC | 2 cut(s) | 306, 1087 |
| Eco52I | CGGCCG | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| Eco81I | CCTNAGG | 1 cut(s) | 1065 |
| EcoRII | CCWGG | 4 cut(s) | 501, 769, 868, 901 |
| EcoT14I | CCWWGG | 3 cut(s) | 136, 286, 1083 |
| EcoT22I | ATGCAT | 1 cut(s) | 892 |
| EgeI | GGCGCC | 2 cut(s) | 65, 215 |
| EheI | GGCGCC | 2 cut(s) | 65, 215 |
| ErhI | CCWWGG | 3 cut(s) | 136, 286, 1083 |
| FaeI | CATG | 9 cut(s) | 788, 823, 894, 963, 1043, 1250, 1293, 1556, 1626 |
| FaqI | GGGAC | 2 cut(s) | 324, 1141 |
| FatI | CATG | 9 cut(s) | 784, 819, 890, 959, 1039, 1246, 1289, 1552, 1622 |
| FauI | CCCGC | 4 cut(s) | 36, 155, 305, 1081 |
| FauNDI | CATATG | 1 cut(s) | 484 |
| FbaI | TGATCA | 1 cut(s) | 628 |
| FblI | GTMKAC | 1 cut(s) | 35 |
| FokI | GGATG | 5 cut(s) | 88, 238, 749, 777, 1592 |
| FspBI | CTAG | 4 cut(s) | 99, 249, 572, 923 |
| GlaI | GCGC | 6 cut(s) | 6, 65, 90, 215, 240, 1394 |
| GsuI | CTGGAG | 1 cut(s) | 885 |
| HaeII | RGCGCY | 5 cut(s) | 67, 92, 217, 242, 1396 |
| HaeIII | GGCC | 3 cut(s) | 44, 501, 698 |
| HapII | CCGG | 4 cut(s) | 61, 211, 304, 1172 |
| HhaI | GCGC | 6 cut(s) | 7, 66, 91, 216, 241, 1395 |
| Hin1I | GRCGYC | 2 cut(s) | 64, 214 |
| Hin1II | CATG | 9 cut(s) | 788, 823, 894, 963, 1043, 1250, 1293, 1556, 1626 |
| Hin6I | GCGC | 6 cut(s) | 5, 64, 89, 214, 239, 1393 |
| HinP1I | GCGC | 6 cut(s) | 5, 64, 89, 214, 239, 1393 |
| HincII | GTYRAC | 3 cut(s) | 36, 516, 1300 |
| HindII | GTYRAC | 3 cut(s) | 36, 516, 1300 |
| HindIII | AAGCTT | 1 cut(s) | 1214 |
| HinfI | GANTC | 5 cut(s) | 143, 293, 760, 1008, 1349 |
| HpaII | CCGG | 4 cut(s) | 61, 211, 304, 1172 |
| HphI | GGTGA | 4 cut(s) | 358, 517, 533, 953 |
| Hpy166II | GTNNAC | 8 cut(s) | 36, 334, 472, 516, 919, 1090, 1282, 1300 |
| Hpy188I | TCNGA | 9 cut(s) | 55, 123, 205, 438, 549, 678, 1007, 1487, 1507 |
| Hpy188III | TCNNGA | 6 cut(s) | 572, 626, 638, 749, 884, 1119 |
| Hpy8I | GTNNAC | 8 cut(s) | 36, 334, 472, 516, 919, 1090, 1282, 1300 |
| Hpy99I | CGWCG | 3 cut(s) | 37, 40, 314 |
| HpyAV | CCTTC | 7 cut(s) | 109, 259, 352, 938, 1119, 1170, 1454 |
| HpyCH4III | ACNGT | 3 cut(s) | 338, 916, 1056 |
| HpyCH4IV | ACGT | 2 cut(s) | 432, 1592 |
| HpyCH4V | TGCA | 9 cut(s) | 20, 428, 562, 784, 823, 848, 890, 1039, 1139 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 95, 147, 245, 297, 563, 857, 896 |
| HpyF3I | CTNAG | 3 cut(s) | 639, 895, 1065 |
| HpySE526I | ACGT | 2 cut(s) | 432, 1592 |
| Hsp92I | GRCGYC | 2 cut(s) | 64, 214 |
| Hsp92II | CATG | 9 cut(s) | 788, 823, 894, 963, 1043, 1250, 1293, 1556, 1626 |
| HspAI | GCGC | 6 cut(s) | 5, 64, 89, 214, 239, 1393 |
| KasI | GGCGCC | 2 cut(s) | 63, 213 |
| Ksp22I | TGATCA | 1 cut(s) | 628 |
| Kzo9I | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| LguI | GCTCTTC | 1 cut(s) | 596 |
| LmnI | GCTCC | 4 cut(s) | 904, 1161, 1174, 1499 |
| Lsp1109I | GCAGC | 8 cut(s) | 32, 148, 412, 578, 860, 863, 938, 1402 |
| LweI | GCATC | 3 cut(s) | 403, 514, 877 |
| MabI | ACCWGGT | 1 cut(s) | 769 |
| MaeI | CTAG | 4 cut(s) | 99, 249, 572, 923 |
| MaeII | ACGT | 2 cut(s) | 432, 1592 |
| MaeIII | GTNAC | 5 cut(s) | 478, 505, 776, 1175, 1593 |
| MalI | GATC | 8 cut(s) | 576, 630, 741, 1071, 1107, 1123, 1149, 1443 |
| MboI | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| MflI | RGATCY | 3 cut(s) | 1069, 1105, 1121 |
| MluCI | AATT | 6 cut(s) | 15, 681, 707, 1275, 1305, 1563 |
| Mly113I | GGCGCC | 2 cut(s) | 64, 214 |
| MlyI | GAGTC | 3 cut(s) | 137, 287, 1002 |
| Mph1103I | ATGCAT | 1 cut(s) | 892 |
| MseI | TTAA | 7 cut(s) | 71, 221, 399, 669, 984, 992, 1029 |
| MspCI | CTTAAG | 1 cut(s) | 398 |
| MspI | CCGG | 4 cut(s) | 61, 211, 304, 1172 |
| MspR9I | CCNGG | 5 cut(s) | 503, 771, 870, 903, 1173 |
| Mva1269I | GAATGC | 1 cut(s) | 427 |
| MvaI | CCWGG | 4 cut(s) | 503, 771, 870, 903 |
| MvnI | CGCG | 1 cut(s) | 7 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 95, 147, 245, 297, 563, 857, 896 |
| NarI | GGCGCC | 2 cut(s) | 64, 214 |
| NciI | CCSGG | 1 cut(s) | 1173 |
| NdeI | CATATG | 1 cut(s) | 484 |
| NdeII | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| NlaIII | CATG | 9 cut(s) | 788, 823, 894, 963, 1043, 1250, 1293, 1556, 1626 |
| NlaIV | GGNNCC | 7 cut(s) | 65, 215, 747, 1071, 1107, 1495, 1512 |
| NmeAIII | GCCGAG | 1 cut(s) | 70 |
| NmuCI | GTSAC | 5 cut(s) | 478, 505, 776, 1175, 1593 |
| NsiI | ATGCAT | 1 cut(s) | 892 |
| NspI | RCATGY | 4 cut(s) | 894, 963, 1293, 1556 |
| NspV | TTCGAA | 1 cut(s) | 1435 |
| PaeI | GCATGC | 1 cut(s) | 894 |
| PciSI | GCTCTTC | 1 cut(s) | 596 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 661, 1432 |
| PctI | GAATGC | 1 cut(s) | 427 |
| PfeI | GAWTC | 2 cut(s) | 760, 1349 |
| Pfl23II | CGTACG | 1 cut(s) | 8 |
| PflFI | GACNNNGTC | 1 cut(s) | 511 |
| PfoI | TCCNGGA | 1 cut(s) | 901 |
| PleI | GAGTC | 3 cut(s) | 137, 287, 1002 |
| PluTI | GGCGCC | 2 cut(s) | 67, 217 |
| PpsI | GAGTC | 3 cut(s) | 137, 287, 1002 |
| Psp6I | CCWGG | 4 cut(s) | 501, 769, 868, 901 |
| PspGI | CCWGG | 4 cut(s) | 501, 769, 868, 901 |
| PspLI | CGTACG | 1 cut(s) | 8 |
| PspN4I | GGNNCC | 7 cut(s) | 65, 215, 747, 1071, 1107, 1495, 1512 |
| PspPI | GGNCC | 3 cut(s) | 306, 697, 1087 |
| PstI | CTGCAG | 2 cut(s) | 430, 564 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1136 |
| PsuI | RGATCY | 3 cut(s) | 1069, 1105, 1121 |
| PsyI | GACNNNGTC | 1 cut(s) | 511 |
| RsaI | GTAC | 1 cut(s) | 10 |
| RsaNI | GTAC | 1 cut(s) | 9 |
| Rsr2I | CGGWCCG | 1 cut(s) | 306 |
| RsrII | CGGWCCG | 1 cut(s) | 306 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| SapI | GCTCTTC | 1 cut(s) | 596 |
| SaqAI | TTAA | 7 cut(s) | 71, 221, 399, 669, 984, 992, 1029 |
| Sau3AI | GATC | 8 cut(s) | 574, 628, 739, 1069, 1105, 1121, 1147, 1441 |
| Sau96I | GGNCC | 3 cut(s) | 306, 697, 1087 |
| SchI | GAGTC | 3 cut(s) | 137, 287, 1002 |
| ScrFI | CCNGG | 5 cut(s) | 503, 771, 870, 903, 1173 |
| SexAI | ACCWGGT | 1 cut(s) | 769 |
| SfaNI | GCATC | 3 cut(s) | 403, 514, 877 |
| SfcI | CTRYAG | 2 cut(s) | 426, 560 |
| SfoI | GGCGCC | 2 cut(s) | 65, 215 |
| SfuI | TTCGAA | 1 cut(s) | 1435 |
| SgrDI | CGTCGACG | 1 cut(s) | 34 |
| SinI | GGWCC | 2 cut(s) | 306, 1087 |
| SmlI | CTYRAG | 1 cut(s) | 398 |
| SmoI | CTYRAG | 1 cut(s) | 398 |
| SphI | GCATGC | 1 cut(s) | 894 |
| Sse9I | AATT | 6 cut(s) | 15, 681, 707, 1275, 1305, 1563 |
| SspDI | GGCGCC | 2 cut(s) | 63, 213 |
| SspI | AATATT | 1 cut(s) | 1027 |
| SspMI | CTAG | 4 cut(s) | 99, 249, 572, 923 |
| StyD4I | CCNGG | 5 cut(s) | 501, 769, 868, 901, 1171 |
| StyI | CCWWGG | 3 cut(s) | 136, 286, 1083 |
| TaaI | ACNGT | 3 cut(s) | 338, 916, 1056 |
| TaiI | ACGT | 2 cut(s) | 435, 1595 |
| TaqI | TCGA | 2 cut(s) | 35, 1435 |
| TaqII | GACCGA | 1 cut(s) | 209 |
| TasI | AATT | 6 cut(s) | 15, 681, 707, 1275, 1305, 1563 |
| TauI | GCSGC | 6 cut(s) | 44, 113, 153, 263, 303, 1223 |
| TfiI | GAWTC | 2 cut(s) | 760, 1349 |
| Tru1I | TTAA | 7 cut(s) | 71, 221, 399, 669, 984, 992, 1029 |
| Tru9I | TTAA | 7 cut(s) | 71, 221, 399, 669, 984, 992, 1029 |
| TscAI | CASTG | 1 cut(s) | 1186 |
| TseFI | GTSAC | 5 cut(s) | 478, 505, 776, 1175, 1593 |
| TseI | GCWGC | 8 cut(s) | 20, 161, 425, 566, 848, 851, 926, 1390 |
| Tsp45I | GTSAC | 5 cut(s) | 478, 505, 776, 1175, 1593 |
| TspDTI | ATGAA | 4 cut(s) | 808, 987, 1459, 1596 |
| TspGWI | ACGGA | 2 cut(s) | 298, 1365 |
| TspRI | CASTG | 1 cut(s) | 1186 |
| Tth111I | GACNNNGTC | 1 cut(s) | 511 |
| Vha464I | CTTAAG | 1 cut(s) | 398 |
| VpaK11BI | GGWCC | 2 cut(s) | 306, 1087 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XceI | RCATGY | 4 cut(s) | 894, 963, 1293, 1556 |
| XmiI | GTMKAC | 1 cut(s) | 35 |
| XspI | CTAG | 4 cut(s) | 99, 249, 572, 923 |
| Zsp2I | ATGCAT | 1 cut(s) | 892 |