pycom15g05260

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007656
Physical Location & Seq
Forward (+)
3131953 .. 3134038
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGCATCTTTTTGATGTTGTTAACCAATATAGAGCAATATTTGCTGATGATACATCAGGCAGTGAAGAAAATTATGACGGTGGTCTTCTTTTCAGTTGGGCTATGCATATAATTACTTCACACCTGAAGACTCTCAAAATTCTGCTTCCAAAGATAACTGAAGGCGGATCTTTATCAAATATCTTGGATCAATGCATGTATTGTGCTATGGGACTTGGTTGGGTTGGGCTAGATTTCCGGGGCTTGCTGCCATCACTGTTTGAAGAGGCAGTTCTCAACTTGTTCTCAAAAAACATGAGCACAGCAGTTGAGAATTTTGAGGTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGCTTTTCGTCGAACAGTCATGGTGATGAAAATCAGGATGATGTAACCCCGCCATCTTATCTTATGGAACATCCACCTCTTGCTGTTTTTGTTAATGGCGTGTCTGCAGCAATGAACGACCTCCGCCCCTGTGCCCCAATAAGTTTAAAGCATGTGCTTGCTCAAGAGTTGATCAAGGGATTGCAGGCTGTTTCTGATTCTTTACTGCGGTACAATACAAATCGGATGCTGAAAGAACACGAGGCTGGACTTTTCCTCTCACTTTGTCGAGCATTTATTGAGGTTACTTACCCGCACTGTGCCACATGCTTTGGCCGCTGTTACCCTGGTGGAGCTGCTTTAATCATGGATGCAAAGAGTCTGTATGATGGGATTGGCCGCCTATTGACAGTCGCCACTCCATCAAGAGGACTCACGAAACCTGTTGGTGATGGAAACGGAGATGGAAATGAGAATGAAAATGAAAAGAACGTAACTGAGAACGGTGACGTGTCTGCAGTAGAAAATAGGGTCTCGCCGGTTGTTGAAGAAACCGATAATACCAACTCTGATGAGGGGGAACAGAAAAGCCCCACTTTGCAAACAGAGGAAGAGACGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

322

Amino Acids

35.1

Weight (kDa)

4.7

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 1 - 104 8.4e-33 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 362
AciI CCGC 7 cut(s) 165, 413, 487, 571, 656, 679, 742
AclWI GGATC 2 cut(s) 175, 195
AcoI YGGCCR 2 cut(s) 676, 739
AcsI RAATTY 2 cut(s) 138, 313
AcuI CTGAAG 2 cut(s) 146, 180
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 362, 770
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 263, 890
AjiI CACGTC 1 cut(s) 853
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 1 cut(s) 698
AluI AGCT 1 cut(s) 698
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 2 cut(s) 880, 950
AlwI GGATC 2 cut(s) 175, 195
AoxI GGCC 2 cut(s) 676, 739
ApeKI GCWGC 3 cut(s) 247, 470, 698
ApoI RAATTY 2 cut(s) 138, 313
AspS9I GGNCC 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 398, 803, 860
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 499
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 2 cut(s) 77, 134
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 234, 482, 685
BccI CCATC 6 cut(s) 259, 424, 725, 772, 788, 800
BciT130I CCWGG 1 cut(s) 690
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 880, 950
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 468, 858
BisI GCNGC 5 cut(s) 248, 471, 679, 699, 742
BlsI GCNGC 5 cut(s) 249, 472, 680, 700, 743
Bme1390I CCNGG 2 cut(s) 239, 690
Bme18I GGWCC 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 853
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 347, 348
BmrFI CCNGG 2 cut(s) 239, 690
BmsI GCATC 3 cut(s) 13, 579, 703
BoxI GACNNNNGTC 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 77, 134
BpuEI CTTGAG 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 239
BsaBI GATNNNNATC 3 cut(s) 172, 336, 393
BsaI GGTCTC 1 cut(s) 880
BsaJI CCNNGG 2 cut(s) 238, 688
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 770
Bse118I RCCGGY 1 cut(s) 880
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 3 cut(s) 172, 336, 393
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 238, 688
BseGI GGATG 4 cut(s) 406, 433, 594, 718
BseJI GATNNNNATC 3 cut(s) 172, 336, 393
BseLI CCNNNNNNNGG 2 cut(s) 362, 770
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 831
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 3 cut(s) 234, 482, 685
BshFI GGCC 2 cut(s) 678, 741
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 238, 881
BslFI GGGAC 2 cut(s) 225, 332
BslI CCNNNNNNNGG 2 cut(s) 362, 770
BsmAI GTCTC 2 cut(s) 880, 950
BsmBI CGTCTC 1 cut(s) 950
BsmFI GGGAC 2 cut(s) 225, 332
BsnI GGCC 2 cut(s) 678, 741
Bso31I GGTCTC 1 cut(s) 880
Bsp1286I GDGCHC 2 cut(s) 302, 499
Bsp143I GATC 3 cut(s) 167, 187, 534
BspACI CCGC 7 cut(s) 165, 413, 487, 571, 656, 679, 742
BspANI GGCC 2 cut(s) 678, 741
BspCNI CTCAG 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 347, 348
BspMAI CTGCAG 2 cut(s) 472, 862
BspPI GGATC 2 cut(s) 175, 195
BspTNI GGTCTC 1 cut(s) 880
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 2 cut(s) 238, 688
BssMI GATC 3 cut(s) 167, 187, 534
BssSI CACGAG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 6 cut(s) 80, 258, 380, 662, 754, 848
Bst6I CTCTTC 2 cut(s) 258, 948
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 245, 522, 549
BstDEI CTNAG 1 cut(s) 840
BstF5I GGATG 4 cut(s) 406, 433, 594, 718
BstKTI GATC 3 cut(s) 170, 190, 537
BstMAI GTCTC 2 cut(s) 880, 950
BstMBI GATC 3 cut(s) 167, 187, 534
BstMWI GCNNNNNNNGC 2 cut(s) 41, 678
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 3 cut(s) 199, 518, 672
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 237, 688
BstSFI CTRYAG 2 cut(s) 468, 858
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 3 cut(s) 234, 482, 685
BstV2I GAAGAC 2 cut(s) 77, 134
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 2 cut(s) 678, 741
BtrI CACGTC 1 cut(s) 853
BtsCI GGATG 4 cut(s) 406, 433, 594, 718
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 4 cut(s) 67, 254, 658, 961
Cac8I GCNNGC 3 cut(s) 245, 522, 549
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 1 cut(s) 346
Csp6I GTAC 1 cut(s) 574
CspCI CAANNNNNGTGG 2 cut(s) 655, 690
CviAII CATG 6 cut(s) 196, 295, 383, 515, 669, 709
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 1 cut(s) 840
DpnI GATC 3 cut(s) 169, 189, 536
DpnII GATC 3 cut(s) 167, 187, 534
DraI TTTAAA 1 cut(s) 510
EaeI YGGCCR 2 cut(s) 676, 739
Eam1104I CTCTTC 2 cut(s) 258, 948
EarI CTCTTC 2 cut(s) 258, 948
EciI GGCGGA 2 cut(s) 180, 476
Eco31I GGTCTC 1 cut(s) 880
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 146, 180
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 688
EcoT22I ATGCAT 3 cut(s) 6, 108, 197
Esp3I CGTCTC 1 cut(s) 950
FaeI CATG 6 cut(s) 199, 298, 386, 518, 672, 712
FalI AAGNNNNNCTT 2 cut(s) 922, 954
FaqI GGGAC 2 cut(s) 225, 332
FatI CATG 6 cut(s) 195, 294, 382, 514, 668, 708
FauI CCCGC 2 cut(s) 420, 663
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 5 cut(s) 248, 471, 679, 699, 742
FokI GGATG 4 cut(s) 413, 420, 601, 725
Fsp4HI GCNGC 5 cut(s) 248, 471, 679, 699, 742
FspBI CTAG 1 cut(s) 230
GluI GCNGC 5 cut(s) 248, 471, 679, 699, 742
HaeIII GGCC 2 cut(s) 678, 741
HapII CCGG 2 cut(s) 238, 881
Hin1II CATG 6 cut(s) 199, 298, 386, 518, 672, 712
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 5 cut(s) 130, 332, 560, 721, 774
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 2 cut(s) 238, 881
HphI GGTGA 3 cut(s) 398, 803, 860
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 559, 588, 913
Hpy188III TCNNGA 4 cut(s) 398, 527, 768, 778
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 6 cut(s) 80, 258, 380, 662, 754, 848
HpyCH4IV ACGT 2 cut(s) 834, 852
HpyCH4V TGCA 8 cut(s) 4, 106, 195, 470, 547, 716, 860, 943
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 678
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 2 cut(s) 834, 852
Hsp92II CATG 6 cut(s) 199, 298, 386, 518, 672, 712
KflI GGGWCCC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 534
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 167, 187, 534
LmnI GCTCC 1 cut(s) 695
Lsp1109I GCAGC 3 cut(s) 234, 482, 685
LweI GCATC 3 cut(s) 13, 579, 703
MaeI CTAG 1 cut(s) 230
MaeII ACGT 2 cut(s) 834, 852
MaeIII GTNAC 5 cut(s) 406, 646, 683, 835, 848
MalI GATC 3 cut(s) 169, 189, 536
MboI GATC 3 cut(s) 167, 187, 534
MboII GAAGA 6 cut(s) 77, 77, 139, 275, 902, 965
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 302, 499
MluCI AATT 4 cut(s) 70, 111, 138, 313
MlyI GAGTC 3 cut(s) 124, 730, 768
Mph1103I ATGCAT 3 cut(s) 6, 108, 197
MseI TTAA 4 cut(s) 21, 456, 509, 704
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 681
MspI CCGG 2 cut(s) 238, 881
MspR9I CCNGG 2 cut(s) 239, 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 41, 678
NciI CCSGG 1 cut(s) 239
NdeII GATC 3 cut(s) 167, 187, 534
NlaIII CATG 6 cut(s) 199, 298, 386, 518, 672, 712
NlaIV GGNNCC 2 cut(s) 347, 348
NmuCI GTSAC 1 cut(s) 848
NsiI ATGCAT 3 cut(s) 6, 108, 197
NspI RCATGY 3 cut(s) 199, 518, 672
PfeI GAWTC 2 cut(s) 332, 560
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 5 cut(s) 249, 472, 680, 700, 743
PleI GAGTC 3 cut(s) 124, 729, 768
PpsI GAGTC 3 cut(s) 124, 729, 768
PpuMI RGGWCCY 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 347, 348
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 2 cut(s) 472, 862
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 4 cut(s) 21, 456, 509, 704
SatI GCNGC 5 cut(s) 248, 471, 679, 699, 742
Sau3AI GATC 3 cut(s) 167, 187, 534
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 3 cut(s) 124, 730, 768
ScrFI CCNGG 2 cut(s) 239, 690
SduI GDGCHC 2 cut(s) 302, 499
SetI ASST 9 cut(s) 126, 324, 442, 486, 648, 700, 787, 837, 855
SfaNI GCATC 3 cut(s) 13, 579, 703
SfcI CTRYAG 2 cut(s) 468, 858
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 4 cut(s) 70, 111, 138, 313
SsiI CCGC 7 cut(s) 165, 413, 487, 571, 656, 679, 742
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 237, 688
TaaI ACNGT 6 cut(s) 80, 258, 380, 662, 754, 848
TaiI ACGT 2 cut(s) 837, 855
TaqI TCGA 2 cut(s) 374, 631
TasI AATT 4 cut(s) 70, 111, 138, 313
TauI GCSGC 2 cut(s) 681, 744
TfiI GAWTC 2 cut(s) 332, 560
Tru1I TTAA 4 cut(s) 21, 456, 509, 704
Tru9I TTAA 4 cut(s) 21, 456, 509, 704
TscAI CASTG 3 cut(s) 67, 261, 665
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 3 cut(s) 247, 470, 698
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 4 cut(s) 405, 491, 834, 840
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 3 cut(s) 67, 261, 665
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 2 cut(s) 138, 313
XceI RCATGY 3 cut(s) 199, 518, 672
XspI CTAG 1 cut(s) 230
Zsp2I ATGCAT 3 cut(s) 6, 108, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.