Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011764

Physical Location & Seq

Genomic Coordinates Reverse (-)

3543680 .. 3546931

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAAGAGGGGGAACGAGGAGAAGGTTATGGGACCTATGTTCCCAAGGCTCCATGTGAATGATGCAGATAAAGGAGGGCCGAGAGCTCCTCCAAGAAACAAGATGGCCCTCTATGAGCAGCTGAGCATCCCATCTCAGAGGTTCAATCCTGGGGTGCTGCCTTTGAATTCAAATAACCAGGGGAGTCGTTCAGATGGAAATTTGGCTTTTCCACTTCGTGGTCGTACATCTACACCTACTCATCAGGCTGTGATGTTTCATGGTCGCCAGTCTGACAGAGCAAATGTAAACGTGCCATTTGAACAAACCGACCTAAGAAGGAAGATCGGAGATGAAGATGATTTTAGTGTTCCTGTATTTGTTCAATCAAGGATGGGTCTTGGTCACAGTAAAACTCCAATTGGTAGTGAGGAAAAACTTTCTCCCATCAGCTCGCCTCATTCTGACCATTTAGTAAAAGTAAGAAACGTGGGGAAGAAGGATCCAAAACAAATAAGCTCCCCAACTCTGAATTTAACACGAGAATTGAGAAGTGAAAGAGAAGAGGACCTAATAGAAGTAAGCGGTTCGAGTAAGGGCCATTCAGGAAAATTTGCCGCAAAAATATCAACCATACAAAAGATTGATGGGCCCGTAGAAGCGAATGCATCACCAAATGAAGAGGATGCAGAATGTTCTGTTCCGAGATTCAACAGGTTAGCTGAGAGTGATGCTTGCTTACAACAAGAGTCTAGATCTGGGTCACAGCCAAACGTTACTGGACAAGGTGATGGTCTTGTTGAGTCTTCAAGGGATGTAGAGAAGGGAACTCTTTCCCAGGAAAAAAGTGTTTCTTGTTCTGGGGCGGATCCTACCAGTCCCAATGAGCCTGATAATGACAGCGAATACCGTGGAGACAGAAAGTGTATTTCACTTCAAATGGGACATGTAGACAAAAGTGATGATGTCTCAGAGACCTCCATGGTGGATTCTATATCCGGCATGGACATCTCTCCTGATGATGTTGTAGGAATAATAGGCCAGAAACATTTCTGGAAGGCAAGAAAAGCAATTGTCAATCAGCAAAGATTGTTTGCGGTTCAAGTATTTGAGTTGCATAGACTCATTAAGGTCCAACGACTGATTGCTGGATCGATTCACATCTTTTGCTTGAAGATACTGCTTTTCTGGGCACATCTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009791 GO:0009826 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010031 GO:0010033 GO:0010119 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048573 GO:0048580 GO:0048589 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080090 GO:0097305 GO:0104004 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

43.42

Weight (kDa)

6.88

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25930
fragaria_vesca	FvH4_2g32300 FvH4_2g32300
malus_domestica	MD08G1074100.v1.1 MD08G1074200.v1.1 MD15G1062000.v1.1
prunus_persica	Prupe.1G416000_v2.0.a1
pyrus_communis	pycom08g06130 pycom15g05860
rosa_chinensis	RchiOBHm_Chr6g0310391
rosa_laevigata	RLG00000010486
rosa_multiflora	Rmu_sc0027652.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158570
rosa_rugosa	Rorug06G0379800
rosa_samantha	Rh6AG493800 Rh6BG503500 Rh6CG508700 Rh6DG494600
rosa_wichuraiana	Rw6G042970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	930
AciI	CCGC	4 cut(s)	564, 597, 845, 1076
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	5 cut(s)	476, 489, 842, 855, 1138
AcsI	RAATTY	4 cut(s)	166, 199, 511, 590
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	925
AjnI	CCWGG	3 cut(s)	148, 177, 816
AluBI	AGCT	5 cut(s)	86, 121, 432, 498, 701
AluI	AGCT	5 cut(s)	86, 121, 432, 498, 701
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	888, 947, 952
AlwI	GGATC	5 cut(s)	476, 489, 842, 855, 1138
AoxI	GGCC	5 cut(s)	77, 105, 577, 629, 1018
ApaI	GGGCCC	1 cut(s)	633
ApeKI	GCWGC	2 cut(s)	118, 157
ApoI	RAATTY	4 cut(s)	166, 199, 511, 590
Asp700I	GAANNNNTTC	2 cut(s)	811, 1028
AspS9I	GGNCC	8 cut(s)	32, 77, 106, 547, 577, 629, 630, 1111
AsuHPI	GGTGA	2 cut(s)	642, 779
AvaII	GGWCC	3 cut(s)	32, 547, 1111
BaeGI	GKGCMC	2 cut(s)	633, 1174
BamHI	GGATCC	2 cut(s)	481, 847
BanII	GRGCYC	2 cut(s)	88, 633
BauI	CACGAG	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	130, 144
BccI	CCATC	7 cut(s)	97, 139, 188, 367, 434, 620, 764
BciT130I	CCWGG	3 cut(s)	150, 179, 818
BcoDI	GTCTC	3 cut(s)	888, 947, 952
BfaI	CTAG	1 cut(s)	732
BglII	AGATCT	1 cut(s)	734
BisI	GCNGC	3 cut(s)	119, 158, 597
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	3 cut(s)	120, 159, 598
Bme1390I	CCNGG	3 cut(s)	150, 179, 818
Bme18I	GGWCC	3 cut(s)	32, 547, 1111
BmgT120I	GGNCC	8 cut(s)	32, 77, 106, 547, 577, 629, 630, 1111
BmiI	GGNNCC	5 cut(s)	33, 50, 483, 631, 849
BmrFI	CCNGG	3 cut(s)	150, 179, 818
BmsI	GCATC	5 cut(s)	52, 135, 655, 656, 700
BpiI	GAAGAC	1 cut(s)	777
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
Bpu1102I	GCTNAGC	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	1133
BsaBI	GATNNNNATC	1 cut(s)	1139
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	6 cut(s)	44, 149, 178, 816, 889, 960
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	268, 763, 855
Bse8I	GATNNNNATC	1 cut(s)	1139
BseBI	CCWGG	3 cut(s)	150, 179, 818
BseCI	ATCGAT	1 cut(s)	1133
BseDI	CCNNGG	6 cut(s)	44, 149, 178, 816, 889, 960
BseGI	GGATG	4 cut(s)	126, 378, 670, 799
BseJI	GATNNNNATC	1 cut(s)	1139
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMII	CTCAG	4 cut(s)	113, 149, 693, 963
BseNI	ACTGG	3 cut(s)	268, 763, 855
BseRI	GAGGAG	2 cut(s)	32, 78
BseSI	GKGCMC	2 cut(s)	633, 1174
BseXI	GCAGC	2 cut(s)	130, 144
BshFI	GGCC	5 cut(s)	79, 107, 579, 631, 1020
BshVI	ATCGAT	1 cut(s)	1133
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	978
BslFI	GGGAC	3 cut(s)	45, 843, 936
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	888, 947, 952
BsmFI	GGGAC	3 cut(s)	45, 843, 936
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	5 cut(s)	79, 107, 579, 631, 1020
Bso31I	GGTCTC	1 cut(s)	947
Bsp120I	GGGCCC	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	88, 633, 1174
Bsp143I	GATC	5 cut(s)	324, 481, 734, 847, 1130
Bsp1720I	GCTNAGC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	960
BspACI	CCGC	4 cut(s)	564, 597, 845, 1076
BspANI	GGCC	5 cut(s)	79, 107, 579, 631, 1020
BspCNI	CTCAG	4 cut(s)	114, 148, 694, 962
BspDI	ATCGAT	1 cut(s)	1133
BspLI	GGNNCC	5 cut(s)	33, 50, 483, 631, 849
BspPI	GGATC	5 cut(s)	476, 489, 842, 855, 1138
BspTNI	GGTCTC	1 cut(s)	947
BsrI	ACTGG	3 cut(s)	268, 763, 855
BssECI	CCNNGG	6 cut(s)	44, 149, 178, 816, 889, 960
BssMI	GATC	5 cut(s)	324, 481, 734, 847, 1130
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	2 cut(s)	44, 960
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	3 cut(s)	150, 179, 818
Bst4CI	ACNGT	2 cut(s)	389, 890
Bst6I	CTCTTC	2 cut(s)	537, 654
BstC8I	GCNNGC	2 cut(s)	434, 715
BstDEI	CTNAG	5 cut(s)	122, 135, 314, 702, 949
BstDSI	CCRYGG	2 cut(s)	889, 960
BstF5I	GGATG	4 cut(s)	126, 378, 670, 799
BstKTI	GATC	5 cut(s)	327, 484, 737, 850, 1133
BstMAI	GTCTC	3 cut(s)	888, 947, 952
BstMBI	GATC	5 cut(s)	324, 481, 734, 847, 1130
BstMWI	GCNNNNNNNGC	1 cut(s)	1046
BstNI	CCWGG	3 cut(s)	150, 179, 818
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	3 cut(s)	148, 177, 816
BstSLI	GKGCMC	2 cut(s)	633, 1174
BstV1I	GCAGC	2 cut(s)	130, 144
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	3 cut(s)	481, 734, 847
BstYI	RGATCY	3 cut(s)	481, 734, 847
Bsu15I	ATCGAT	1 cut(s)	1133
BsuRI	GGCC	5 cut(s)	79, 107, 579, 631, 1020
BsuTUI	ATCGAT	1 cut(s)	1133
BtgI	CCRYGG	2 cut(s)	889, 960
BtsCI	GGATG	4 cut(s)	126, 378, 670, 799
Cac8I	GCNNGC	2 cut(s)	434, 715
Cfr13I	GGNCC	8 cut(s)	32, 77, 106, 547, 577, 629, 630, 1111
ClaI	ATCGAT	1 cut(s)	1133
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	5 cut(s)	53, 260, 926, 961, 982
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	5 cut(s)	122, 135, 314, 702, 949
DpnI	GATC	5 cut(s)	326, 483, 736, 849, 1132
DpnII	GATC	5 cut(s)	324, 481, 734, 847, 1130
DraIII	CACNNNGTG	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	537, 654
EarI	CTCTTC	2 cut(s)	537, 654
EciI	GGCGGA	1 cut(s)	860
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	44, 960
Eco24I	GRGCYC	2 cut(s)	88, 633
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	3 cut(s)	32, 547, 1111
Eco53kI	GAGCTC	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	2 cut(s)	32, 547
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	148, 177, 816
EcoT14I	CCWWGG	2 cut(s)	44, 960
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	2 cut(s)	88, 633
ErhI	CCWWGG	2 cut(s)	44, 960
FaeI	CATG	5 cut(s)	56, 263, 929, 964, 985
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FaqI	GGGAC	3 cut(s)	45, 843, 936
FatI	CATG	5 cut(s)	52, 259, 925, 960, 981
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	3 cut(s)	119, 158, 597
FokI	GGATG	4 cut(s)	113, 385, 677, 806
FriOI	GRGCYC	2 cut(s)	88, 633
Fsp4HI	GCNGC	3 cut(s)	119, 158, 597
FspBI	CTAG	1 cut(s)	732
GluI	GCNGC	3 cut(s)	119, 158, 597
HaeIII	GGCC	5 cut(s)	79, 107, 579, 631, 1020
HapII	CCGG	1 cut(s)	978
Hin1II	CATG	5 cut(s)	56, 263, 929, 964, 985
HinfI	GANTC	7 cut(s)	184, 687, 728, 782, 968, 1101, 1135
HpaII	CCGG	1 cut(s)	978
HphI	GGTGA	2 cut(s)	642, 779
Hpy166II	GTNNAC	2 cut(s)	289, 931
Hpy188I	TCNGA	8 cut(s)	138, 193, 274, 329, 445, 510, 684, 952
Hpy188III	TCNNGA	4 cut(s)	585, 732, 995, 1033
Hpy8I	GTNNAC	2 cut(s)	289, 931
HpyAV	CCTTC	5 cut(s)	16, 312, 472, 796, 1030
HpyCH4III	ACNGT	2 cut(s)	389, 890
HpyCH4IV	ACGT	3 cut(s)	291, 468, 753
HpyCH4V	TGCA	4 cut(s)	65, 647, 668, 1096
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1046
HpyF3I	CTNAG	5 cut(s)	122, 135, 314, 702, 949
HpySE526I	ACGT	3 cut(s)	291, 468, 753
Hsp92II	CATG	5 cut(s)	56, 263, 929, 964, 985
Kzo9I	GATC	5 cut(s)	324, 481, 734, 847, 1130
LmnI	GCTCC	3 cut(s)	54, 91, 503
Lsp1109I	GCAGC	2 cut(s)	130, 144
LweI	GCATC	5 cut(s)	52, 135, 655, 656, 700
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	291, 468, 753
MaeIII	GTNAC	3 cut(s)	383, 741, 754
MalI	GATC	5 cut(s)	326, 483, 736, 849, 1132
MboI	GATC	5 cut(s)	324, 481, 734, 847, 1130
MboII	GAAGA	8 cut(s)	16, 334, 347, 487, 554, 671, 777, 1165
MfeI	CAATTG	2 cut(s)	399, 1050
MflI	RGATCY	3 cut(s)	481, 734, 847
MhlI	GDGCHC	3 cut(s)	88, 633, 1174
MluCI	AATT	7 cut(s)	166, 199, 399, 511, 524, 590, 1050
MlyI	GAGTC	4 cut(s)	193, 737, 791, 1095
MmeI	TCCRAC	1 cut(s)	1138
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	2 cut(s)	811, 1028
MseI	TTAA	3 cut(s)	515, 1107, 1183
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	1 cut(s)	978
MspR9I	CCNGG	3 cut(s)	150, 179, 818
MunI	CAATTG	2 cut(s)	399, 1050
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	3 cut(s)	150, 179, 818
MwoI	GCNNNNNNNGC	1 cut(s)	1046
NcoI	CCATGG	1 cut(s)	960
NdeII	GATC	5 cut(s)	324, 481, 734, 847, 1130
NlaIII	CATG	5 cut(s)	56, 263, 929, 964, 985
NlaIV	GGNNCC	5 cut(s)	33, 50, 483, 631, 849
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	383, 741
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	929
PciI	ACATGT	1 cut(s)	925
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	2 cut(s)	811, 1028
PfeI	GAWTC	3 cut(s)	687, 968, 1135
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	120, 159, 598
PleI	GAGTC	4 cut(s)	192, 736, 790, 1095
PpsI	GAGTC	4 cut(s)	192, 736, 790, 1095
PpuMI	RGGWCCY	2 cut(s)	32, 547
PscI	ACATGT	1 cut(s)	925
Psp124BI	GAGCTC	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	753
Psp5II	RGGWCCY	2 cut(s)	32, 547
Psp6I	CCWGG	3 cut(s)	148, 177, 816
PspGI	CCWGG	3 cut(s)	148, 177, 816
PspN4I	GGNNCC	5 cut(s)	33, 50, 483, 631, 849
PspOMI	GGGCCC	1 cut(s)	629
PspPI	GGNCC	8 cut(s)	32, 77, 106, 547, 577, 629, 630, 1111
PspPPI	RGGWCCY	2 cut(s)	32, 547
PsuI	RGATCY	3 cut(s)	481, 734, 847
PvuII	CAGCTG	1 cut(s)	121
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	515, 1107, 1183
SatI	GCNGC	3 cut(s)	119, 158, 597
Sau3AI	GATC	5 cut(s)	324, 481, 734, 847, 1130
Sau96I	GGNCC	8 cut(s)	32, 77, 106, 547, 577, 629, 630, 1111
SchI	GAGTC	4 cut(s)	193, 737, 791, 1095
ScrFI	CCNGG	3 cut(s)	150, 179, 818
SduI	GDGCHC	3 cut(s)	88, 633, 1174
SfaNI	GCATC	5 cut(s)	52, 135, 655, 656, 700
SinI	GGWCC	3 cut(s)	32, 547, 1111
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	7 cut(s)	166, 199, 399, 511, 524, 590, 1050
SsiI	CCGC	4 cut(s)	564, 597, 845, 1076
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	3 cut(s)	148, 177, 816
StyI	CCWWGG	2 cut(s)	44, 960
TaaI	ACNGT	2 cut(s)	389, 890
TaiI	ACGT	3 cut(s)	294, 471, 756
TaqI	TCGA	2 cut(s)	569, 1133
TasI	AATT	7 cut(s)	166, 199, 399, 511, 524, 590, 1050
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	687, 968, 1135
Tru1I	TTAA	3 cut(s)	515, 1107, 1183
Tru9I	TTAA	3 cut(s)	515, 1107, 1183
TseFI	GTSAC	2 cut(s)	383, 741
TseI	GCWGC	2 cut(s)	118, 157
Tsp45I	GTSAC	2 cut(s)	383, 741
TspDTI	ATGAA	4 cut(s)	17, 248, 348, 672
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	32, 547, 1111
XapI	RAATTY	4 cut(s)	166, 199, 511, 590
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	930
XmnI	GAANNNNTTC	2 cut(s)	811, 1028
XspI	CTAG	1 cut(s)	732
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.