Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013197

Physical Location & Seq

Genomic Coordinates Reverse (-)

4186660 .. 4187868

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAATGTTGACCACGGTTTTGACCAACACTACAGTGACACAGACATGGAAGAAGGCGCGCAACTATGCGAGGCGGCGAGGAACGGCGACACCGAGAAGCTGAAAGCTTTAATACTCGCCGGAGCTGACGTTACGTACTTGGATGGCGAAGGCCTCAATCCGCTGATGCACGCTGCCAAATTGGGCCACGCCGATGCCGTCACTGCCCTTCTAGAAGCTGGCGCGCCCAGGAACGCCTTATCCCCTTCCAGCCTCTCCGCAGGCGATTTCGCCATGGAGGCAGGCCACGAGGACGCCTACGATATACTCCTCAATGCCGGGATTCAAGCAGAATTGGTACTCGGAACGATTGCGAGGAGGGAGAAGAAGGACGGGGATAGCGATGGCGATTATTTGGAAGACACAGTGAGCTTTAGAAAGGATAAGCTGATGGACTCGAATTGTAAGGCGGTGATGATGGCCCGGGAGCATCCGTTAATGGAGGCACACGCAAAAGCGGTTTGTTCCGGAGGTGGCCTTGTGTTGAATATTGGATTCGGAATGGGGATTGTGGATACAACCATTCGGAAATACTCCCCCGCTTCGCATACCATCGTTGAGGCTCACCCTGAGGTTTATCAGCGTATGATTCAAACCGGTTGGGCACAGAAGGATAACGTGAACTTAATATTCGGTCGATGGCAGGATGTGCTACCTCAGCTTAAATCTTATGATGGGATTTTCTTTGACACCTACGGAGAGTACTACGAAGACTTGAGAGAGTTCGACCGGCATCTTCCCAAGTTATTGAAGCCAGGCGGGATCTATTCGTTCTTCAATGGCCTTTGCGGAGGTAATGCGTTCTTCCATGTCGTTTACTGTCAGTTGGTTTCACTAGAACTGCAGAATTTGGGTTACTCTACACGGTTCATTCCATTGCCTGTTAAGGATTGTTTAGGTAAACAAGTTCGGGAAGGTGTCAAACAAAAGTATTGGCAGCTCGATGCTTATTACCTCCCTGTTTGTCAGTCTGTAGAGGATACAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006464 GO:0006479 GO:0006520 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009116 GO:0009119 GO:0009987 GO:0016273 GO:0016274 GO:0016740 GO:0016741 GO:0017144 GO:0018193 GO:0018195 GO:0018216 GO:0019538 GO:0019702 GO:0019752 GO:0022613 GO:0032259 GO:0034641 GO:0035246 GO:0036211 GO:0042254 GO:0042278 GO:0043170 GO:0043412 GO:0043414 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044464 GO:0046128 GO:0046483 GO:0046498 GO:0046500 GO:0051186 GO:0055086 GO:0071704 GO:0071840 GO:0072521 GO:0140096 GO:1901135 GO:1901360 GO:1901564 GO:1901605 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

343

Amino Acids

37.85

Weight (kDa)

4.94

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	22 - 109	1.6e-11	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65860 AT5G65860 AT5G65860
fragaria_vesca	FvH4_2g33350
malus_domestica	MD08G1088100.v1.1
prunus_persica	Prupe.1G425800_v2.0.a1
pyrus_communis	pycom08g07170 pycom15g06810
rosa_chinensis	RchiOBHm_Chr6g0309231
rosa_laevigata	RLG00000010580
rosa_multiflora	Rmu_sc0016971.1_g000006 Rmu_sc0020102.1_g000011
rosa_roxburghii	Rroxscaffold_7G00159540
rosa_rugosa	Rorug06G0370500
rosa_samantha	Rh6BG492800 Rh6CG497700 Rh6DG484300
rosa_wichuraiana	Rw6G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 224
AccIII	TCCGGA	1 cut(s)	506
AciI	CCGC	8 cut(s)	74, 161, 258, 449, 497, 579, 798, 828
AclWI	GGATC	1 cut(s)	809
AcsI	RAATTY	1 cut(s)	886
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	3 cut(s)	137, 339, 743
AgeI	ACCGGT	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	326, 526, 632, 790, 817
AjnI	CCWGG	2 cut(s)	227, 793
AleI	CACNNNNGTG	1 cut(s)	33
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	8 cut(s)	100, 107, 125, 218, 411, 427, 700, 979
AluI	AGCT	8 cut(s)	100, 107, 125, 218, 411, 427, 700, 979
AlwI	GGATC	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	506
AoxI	GGCC	6 cut(s)	151, 184, 283, 459, 514, 820
ApeKI	GCWGC	2 cut(s)	173, 976
ApoI	RAATTY	1 cut(s)	886
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AscI	GGCGCGCC	1 cut(s)	222
AsiGI	ACCGGT	1 cut(s)	635
AspLEI	GCGC	4 cut(s)	59, 61, 224, 226
AspS9I	GGNCC	2 cut(s)	184, 460
AsuC2I	CCSGG	3 cut(s)	319, 463, 464
AsuHPI	GGTGA	2 cut(s)	463, 596
AvaI	CYCGRG	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	405, 756
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	2 cut(s)	160, 988
BccI	CCATC	7 cut(s)	137, 377, 424, 451, 599, 672, 707
BceAI	ACGGC	2 cut(s)	100, 182
BciT130I	CCWGG	2 cut(s)	229, 795
BciVI	GTATCC	2 cut(s)	547, 1012
BcnI	CCSGG	3 cut(s)	319, 463, 464
BfaI	CTAG	2 cut(s)	212, 875
BfmI	CTRYAG	3 cut(s)	31, 881, 1011
BfuI	GTATCC	2 cut(s)	547, 1012
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	3 cut(s)	75, 174, 977
BlsI	GCNGC	3 cut(s)	76, 175, 978
BmcAI	AGTACT	1 cut(s)	743
Bme1390I	CCNGG	5 cut(s)	229, 319, 463, 464, 795
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	184, 460
BmrFI	CCNGG	5 cut(s)	229, 319, 463, 464, 795
BmsI	GCATC	5 cut(s)	156, 184, 478, 781, 973
BpiI	GAAGAC	2 cut(s)	405, 756
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	3 cut(s)	319, 463, 464
BsaAI	YACGTR	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	4 cut(s)	13, 227, 273, 462
BsaWI	WCCGGW	2 cut(s)	506, 635
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 458, 488
Bse118I	RCCGGY	2 cut(s)	635, 768
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	914
BseAI	TCCGGA	1 cut(s)	506
BseBI	CCWGG	2 cut(s)	229, 795
BseDI	CCNNGG	4 cut(s)	13, 227, 273, 462
BseGI	GGATG	3 cut(s)	148, 469, 691
BseMI	GCAATG	1 cut(s)	914
BseMII	CTCAG	2 cut(s)	600, 710
BsePI	GCGCGC	2 cut(s)	57, 222
BseRI	GAGGAG	2 cut(s)	299, 370
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	2 cut(s)	160, 988
Bsh1236I	CGCG	2 cut(s)	59, 224
Bsh1285I	CGRYCG	2 cut(s)	676, 769
BshFI	GGCC	6 cut(s)	153, 186, 285, 461, 516, 822
BshTI	ACCGGT	1 cut(s)	635
BsiEI	CGRYCG	2 cut(s)	676, 769
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	6 cut(s)	120, 318, 463, 507, 636, 769
BsnI	GGCC	6 cut(s)	153, 186, 285, 461, 516, 822
BsoBI	CYCGRG	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp13I	TCCGGA	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	801
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	8 cut(s)	74, 161, 258, 449, 497, 579, 798, 828
BspANI	GGCC	6 cut(s)	153, 186, 285, 461, 516, 822
BspCNI	CTCAG	2 cut(s)	601, 709
BspEI	TCCGGA	1 cut(s)	506
BspFNI	CGCG	2 cut(s)	59, 224
BspMAI	CTGCAG	1 cut(s)	885
BspPI	GGATC	1 cut(s)	809
BsrDI	GCAATG	1 cut(s)	914
BsrFI	RCCGGY	2 cut(s)	635, 768
BssAI	RCCGGY	2 cut(s)	635, 768
BssECI	CCNNGG	4 cut(s)	13, 227, 273, 462
BssHII	GCGCGC	2 cut(s)	57, 222
BssMI	GATC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	2 cut(s)	229, 795
Bst4CI	ACNGT	5 cut(s)	17, 35, 406, 860, 906
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	135
BstC8I	GCNNGC	6 cut(s)	59, 171, 220, 224, 262, 283
BstDEI	CTNAG	2 cut(s)	609, 696
BstDSI	CCRYGG	2 cut(s)	13, 273
BstF5I	GGATG	3 cut(s)	148, 469, 691
BstFNI	CGCG	2 cut(s)	59, 224
BstHHI	GCGC	4 cut(s)	59, 61, 224, 226
BstKTI	GATC	1 cut(s)	804
BstMBI	GATC	1 cut(s)	801
BstMCI	CGRYCG	2 cut(s)	676, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 278, 688, 697
BstNI	CCWGG	2 cut(s)	229, 795
BstSCI	CCNGG	5 cut(s)	227, 317, 461, 462, 793
BstSFI	CTRYAG	3 cut(s)	31, 881, 1011
BstSLI	GKGCMC	1 cut(s)	646
BstSNI	TACGTA	1 cut(s)	135
BstUI	CGCG	2 cut(s)	59, 224
BstV1I	GCAGC	2 cut(s)	160, 988
BstV2I	GAAGAC	2 cut(s)	405, 756
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	2 cut(s)	547, 1012
BsuRI	GGCC	6 cut(s)	153, 186, 285, 461, 516, 822
BtgI	CCRYGG	2 cut(s)	13, 273
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	148, 469, 691
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	40, 201, 411
Cac8I	GCNNGC	6 cut(s)	59, 171, 220, 224, 262, 283
CfoI	GCGC	4 cut(s)	59, 61, 224, 226
Cfr10I	RCCGGY	2 cut(s)	635, 768
Cfr13I	GGNCC	2 cut(s)	184, 460
Cfr9I	CCCGGG	1 cut(s)	462
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	3 cut(s)	136, 338, 742
CspAI	ACCGGT	1 cut(s)	635
CviAII	CATG	3 cut(s)	46, 274, 848
CviQI	GTAC	3 cut(s)	136, 338, 742
DdeI	CTNAG	2 cut(s)	609, 696
DpnI	GATC	1 cut(s)	803
DpnII	GATC	1 cut(s)	801
Eco105I	TACGTA	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	227, 793
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	49, 277, 851
FaiI	YATR	8 cut(s)	47, 67, 275, 305, 588, 626, 711, 849
FatI	CATG	3 cut(s)	45, 273, 847
FauI	CCCGC	2 cut(s)	586, 791
Fnu4HI	GCNGC	3 cut(s)	75, 174, 977
FokI	GGATG	3 cut(s)	155, 456, 698
Fsp4HI	GCNGC	3 cut(s)	75, 174, 977
FspBI	CTAG	2 cut(s)	212, 875
GlaI	GCGC	4 cut(s)	58, 60, 223, 225
GluI	GCNGC	3 cut(s)	75, 174, 977
HaeIII	GGCC	6 cut(s)	153, 186, 285, 461, 516, 822
HapII	CCGG	6 cut(s)	120, 318, 463, 507, 636, 769
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	4 cut(s)	59, 61, 224, 226
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	49, 277, 851
Hin6I	GCGC	4 cut(s)	57, 59, 222, 224
HinP1I	GCGC	4 cut(s)	57, 59, 222, 224
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	4 cut(s)	322, 434, 534, 628
HpaII	CCGG	6 cut(s)	120, 318, 463, 507, 636, 769
HphI	GGTGA	2 cut(s)	463, 596
Hpy166II	GTNNAC	4 cut(s)	10, 661, 856, 941
Hpy188I	TCNGA	3 cut(s)	344, 539, 567
Hpy188III	TCNNGA	3 cut(s)	212, 507, 950
Hpy8I	GTNNAC	4 cut(s)	10, 661, 856, 941
HpyAV	CCTTC	7 cut(s)	47, 143, 218, 255, 361, 643, 947
HpyCH4III	ACNGT	5 cut(s)	17, 35, 406, 860, 906
HpyCH4IV	ACGT	3 cut(s)	129, 134, 657
HpyCH4V	TGCA	2 cut(s)	169, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 278, 688, 697
HpyF3I	CTNAG	2 cut(s)	609, 696
HpySE526I	ACGT	3 cut(s)	129, 134, 657
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	49, 277, 851
HspAI	GCGC	4 cut(s)	57, 59, 222, 224
Kpn2I	TCCGGA	1 cut(s)	506
Kzo9I	GATC	1 cut(s)	801
LmnI	GCTCC	2 cut(s)	122, 466
Lsp1109I	GCAGC	2 cut(s)	160, 988
LweI	GCATC	5 cut(s)	156, 184, 478, 781, 973
MaeI	CTAG	2 cut(s)	212, 875
MaeII	ACGT	3 cut(s)	129, 134, 657
MaeIII	GTNAC	4 cut(s)	35, 130, 199, 893
MalI	GATC	1 cut(s)	803
MboI	GATC	1 cut(s)	801
MboII	GAAGA	7 cut(s)	62, 376, 410, 761, 767, 805, 835
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	4 cut(s)	179, 332, 439, 886
MlyI	GAGTC	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	506
MseI	TTAA	5 cut(s)	110, 476, 665, 702, 924
MslI	CAYNNNNRTG	3 cut(s)	33, 44, 192
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	6 cut(s)	120, 318, 463, 507, 636, 769
MspR9I	CCNGG	5 cut(s)	229, 319, 463, 464, 795
MvaI	CCWGG	2 cut(s)	229, 795
MvnI	CGCG	2 cut(s)	59, 224
MwoI	GCNNNNNNNGC	4 cut(s)	203, 278, 688, 697
NciI	CCSGG	3 cut(s)	319, 463, 464
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	801
NlaIII	CATG	3 cut(s)	49, 277, 851
NmuCI	GTSAC	2 cut(s)	35, 199
OliI	CACNNNNGTG	1 cut(s)	33
PalAI	GGCGCGCC	1 cut(s)	222
PauI	GCGCGC	2 cut(s)	57, 222
PceI	AGGCCT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 195, 378
PfeI	GAWTC	3 cut(s)	322, 534, 628
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	3 cut(s)	76, 175, 978
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	227, 793
PspGI	CCWGG	2 cut(s)	227, 793
PspPI	GGNCC	2 cut(s)	184, 460
PstI	CTGCAG	1 cut(s)	885
PsuI	RGATCY	1 cut(s)	801
PteI	GCGCGC	2 cut(s)	57, 222
RsaI	GTAC	3 cut(s)	137, 339, 743
RsaNI	GTAC	3 cut(s)	136, 338, 742
RseI	CAYNNNNRTG	3 cut(s)	33, 44, 192
SaqAI	TTAA	5 cut(s)	110, 476, 665, 702, 924
SatI	GCNGC	3 cut(s)	75, 174, 977
Sau3AI	GATC	1 cut(s)	801
Sau96I	GGNCC	2 cut(s)	184, 460
ScaI	AGTACT	1 cut(s)	743
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	5 cut(s)	229, 319, 463, 464, 795
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	5 cut(s)	156, 184, 478, 781, 973
SfcI	CTRYAG	3 cut(s)	31, 881, 1011
SgsI	GGCGCGCC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	464
SmiMI	CAYNNNNRTG	3 cut(s)	33, 44, 192
SmlI	CTYRAG	1 cut(s)	754
SmoI	CTYRAG	1 cut(s)	754
SnaBI	TACGTA	1 cut(s)	135
Sse9I	AATT	4 cut(s)	179, 332, 439, 886
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	8 cut(s)	74, 161, 258, 449, 497, 579, 798, 828
SspI	AATATT	2 cut(s)	529, 669
SspMI	CTAG	2 cut(s)	212, 875
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	5 cut(s)	227, 317, 461, 462, 793
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	5 cut(s)	17, 35, 406, 860, 906
TaiI	ACGT	3 cut(s)	132, 137, 660
TaqI	TCGA	4 cut(s)	437, 676, 765, 981
TaqII	GACCGA	1 cut(s)	662
TasI	AATT	4 cut(s)	179, 332, 439, 886
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	322, 534, 628
Tru1I	TTAA	5 cut(s)	110, 476, 665, 702, 924
Tru9I	TTAA	5 cut(s)	110, 476, 665, 702, 924
TscAI	CASTG	3 cut(s)	40, 208, 411
TseFI	GTSAC	2 cut(s)	35, 199
TseI	GCWGC	2 cut(s)	173, 976
Tsp45I	GTSAC	2 cut(s)	35, 199
TspDTI	ATGAA	2 cut(s)	17, 898
TspGWI	ACGGA	2 cut(s)	462, 750
TspMI	CCCGGG	1 cut(s)	462
TspRI	CASTG	3 cut(s)	40, 208, 411
XapI	RAATTY	1 cut(s)	886
XbaI	TCTAGA	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	462
XspI	CTAG	2 cut(s)	212, 875
ZrmI	AGTACT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.